Search results for "Models"

showing 10 items of 8211 documents

The (2-phenyl-2-trimethylsilyl)ethyl-(PTMSEL)-linker in the synthesis of glycopeptide partial structures of complex cell surface glycoproteins.

2003

The (2-phenyl-2-trimethylsilyl)ethyl-(PTMSEL) linker represents a novel fluoride-sensitive anchor for the solid-phase synthesis of protected peptides and glycopeptides. Its cleavage is achieved under almost neutral conditions using tetrabutylammonium fluoride trihydrate in dichloromethane thus allowing the construction of complex molecules sensitive to basic and acidic media commonly required for the cleavage of standard linker systems. The advantages of the PTMSEL linker are demonstrated in the synthesis of glycopeptides from the liver intestine (LI)-cadherin and the mucin MUC1, bearing carbohydrate moieties such as N-linked chitobiose or O-linked sialyl-T(N)-residues. The synthesis of the…

Trimethylsilyl CompoundsStereochemistryDiketopiperazinesChitobioseCleavage (embryo)DisaccharidesCatalysisPiperazineschemistry.chemical_compoundFluoridesSolid-phase synthesisMoleculeHumansIntestinal MucosaProtein secondary structureDichloromethaneAspartic AcidMethylene ChlorideMembrane GlycoproteinsOrganic ChemistryGlycopeptidesMucinsGeneral ChemistryCadherinsCombinatorial chemistryGlycopeptideIntestinesQuaternary Ammonium CompoundschemistryLiverModels ChemicalSialic AcidsLinkerChemistry (Weinheim an der Bergstrasse, Germany)
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Effect of tin and lead chlorotriphenyl analogues on fruit fly Drosophila hydei and liposomes membrane

2011

This article presents the results of a study investigating the biological activity of triphenyltin chloride (TPhT) and two metalloorganic compounds, triphenyllead chloride (TPhL) and triphenylmethane chloride (TPhC), in their interaction with model membranes and the living organisms of fruit flies Drosophila hydei. The study of model membranes (sonicated liposomes) was conducted using the electron spin resonance (ESR) spin probe technique, whereas the experiment on fruit flies involved investigating their viability on media containing the studied compounds. The test results clearly demonstrate that TPhT affects fruit flies more actively than TPhL (complete lethality after 7 days of culture …

Triphenyltin chlorideHealth Toxicology and MutagenesisToxicologyBiochemistryChloridechemistry.chemical_compoundOrganometallic CompoundsOrganotin CompoundsmedicineAnimalsLipid bilayerMolecular BiologyDrosophilaLiposomeTriphenylmethanebiologyCell MembranefungiElectron Spin Resonance SpectroscopyTrityl CompoundsGeneral Medicinebiology.organism_classificationMembraneLeadBiochemistrychemistryTinLiposomesModels AnimalDrosophila hydeiMolecular MedicineDrosophilamedicine.drugJournal of Biochemical and Molecular Toxicology
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Stable adducts of nerve agents sarin, soman and cyclosarin with TRIS, TES and related buffer compounds—Characterization by LC-ESI-MS/MS and NMR and i…

2009

Abstract Buffering compounds like TRIS are frequently used in chemical, biochemical and biomedical applications to control pH in solution. One of the prerequisites of a buffer compound, in addition to sufficient buffering capacity and pH stability over time, is its non-reactivity with other constituents of the solution. This is especially important in the field of analytical chemistry where analytes are to be determined quantitatively. Investigating the enzymatic hydrolysis of G-type nerve agents sarin, soman and cyclosarin in buffered solution we have identified stable buffer adducts of TRIS, TES and other buffer compounds with the nerve agents. We identified the molecular structure of the…

TrisSpectrometry Mass Electrospray IonizationMagnetic Resonance SpectroscopyBicineSomanClinical BiochemistryAnalytical chemistryCyclosarinBiochemistryAnalytical Chemistrychemistry.chemical_compoundOrganophosphorus CompoundsTandem Mass SpectrometryChemical Warfare AgentsTromethamineTE bufferTBE bufferTricineAqueous solutionChromatographyChemistryCell BiologyGeneral MedicineHydrogen-Ion ConcentrationSarinMOPSModels ChemicalChromatography LiquidJournal of Chromatography B
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Neptunium(V) Sorption and Diffusion in Opalinus Clay

2009

The sorption and diffusion behavior of 8 x 10(-6) M Np(V) in Opalinus Clay (OPA) with synthetic pore water (pH 7.6) as mobile phase was studied under ambient conditions by batch and diffusion experiments, respectively. The Kd value determined by batch experiments with OPA suspensions is equal to 0.025 +/- 0.005 m3/kg. The diffusion-accessible porosity epsilon of intact OPA as determined by through- and out-diffusion experiments with tritiated water (HTO) is equal to 0.15 +/- 0.01. The diffusion coefficient De and the rock capacity factor alpha of 22Na+ in OPA were measured by through-, out-, and in-diffusion experiments and asserted the reliability of these diffusion techniques. For the dif…

Tritiated waterNeptuniumDiffusionchemistry.chemical_elementSorptionGeneral ChemistryModels TheoreticalThermal diffusivityCapacity factorDiffusionNeptuniumchemistry.chemical_compoundWaste ManagementchemistryRadioactive WastePhase (matter)ClayEnvironmental ChemistryAluminum SilicatesPorosityPorositySwitzerlandNuclear chemistryEnvironmental Science & Technology
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From COVID-19 to future electrification: Assessing traffic impacts on air quality by a machine-learning model

2021

The large fluctuations in traffic during the COVID-19 pandemic provide an unparalleled opportunity to assess vehicle emission control efficacy. Here we develop a random-forest regression model, based on the large volume of real-time observational data during COVID-19, to predict surface-level NO(2), O(3), and fine particle concentration in the Los Angeles megacity. Our model exhibits high fidelity in reproducing pollutant concentrations in the Los Angeles Basin and identifies major factors controlling each species. During the strictest lockdown period, traffic reduction led to decreases in NO(2) and particulate matter with aerodynamic diameters <2.5 μm by –30.1% and –17.5%, respectively, bu…

TruckPollutantAir PollutantsMultidisciplinaryMeteorologyAir pollutionCOVID-19TransportationRegression analysisModels TheoreticalParticulatesmedicine.disease_causeMachine LearningElectrificationMegacityElectricityAir PollutionPhysical SciencesmedicineHumansEnvironmental scienceParticulate MatterAir quality indexAlgorithmsVehicle EmissionsProceedings of the National Academy of Sciences
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Multivariate optimization of the hollow fibre liquid phase microextraction of muscimol in human urine samples.

2016

Abstract A liquid phase microextraction based on hollow fibre followed by liquid chromatographic determination was developed for the extraction and quantitation of the hallucinogenic muscimol from urine samples. Method applicability on polar hallucinogens was also tested on two alkaloids, a psychedelic hallucinogen, tryptamine and a polar amino acid, tryptophan which exists in its charged state in the entire pH range. A multivariate design of experiments was used in which a half fractional factorial approach was applied to screen six factors (donor phase pH, acceptor phase HCl concentration, carrier composition, stirring rate, extraction time and salt content) for their extent of vitality i…

TryptamineMaleAnalyteCentral composite designCalibration curveLiquid Phase MicroextractionClinical BiochemistryAnalytical chemistry010402 general chemistry01 natural sciencesBiochemistryAnalytical ChemistryMatrix (chemical analysis)chemistry.chemical_compoundYoung AdultLimit of DetectionHumansDetection limitAnalysis of VarianceChromatographyChemistryMuscimolHydrophilic interaction chromatography010401 analytical chemistryExtraction (chemistry)TryptophanReproducibility of ResultsCell BiologyGeneral MedicineModels TheoreticalReference StandardsTryptamines0104 chemical sciencesCalibrationMultivariate AnalysisJournal of chromatography. B, Analytical technologies in the biomedical and life sciences
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A facile chemoenzymatic approach: one-step syntheses of monoterpenoid indole alkaloids.

2010

Facile chemoenzymatic syntheses of cytotoxic monoterpenoid indole alkaloids with novel skeletons and multiple chiral centers are described. Synthesis of these alkaloids was achieved by a simple one-step reaction using strictosidine and 12-aza-strictosidine as the key intermediates. Strictosidines were prepared by coupling of secologanin with tryptamine and 7-aza-tryptamine, respectively, using the immobilized recombinant Rauvolfia strictosidine synthase. A detailed stereochemical analysis is presented herein. The results provide an opportunity for a chemoenzymatic approach that leads to an increased diversification of complex alkaloids with improved structures and activities.

TryptamineModels MolecularRauvolfiaStrictosidine synthaseStereochemistryOne-StepBiochemistryRauwolfiachemistry.chemical_compoundCarbon-Nitrogen LyasesSecologanin Tryptamine AlkaloidsVinca AlkaloidsAza CompoundsbiologyMolecular StructureOrganic ChemistryGeneral Chemistrybiology.organism_classificationEnzymes ImmobilizedSecologanin Tryptamine AlkaloidsRecombinant ProteinschemistryBiocatalysisStrictosidinebiology.proteinBiocatalysisSecologaninChemistry, an Asian journal
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Design and experimental test of a low costweather buoy

2013

The importance of prevention plans based on realistic inundation scenarios was dramatically highlighted by the Indian Ocean Tsunami of 26 December 2004. But also in the Mediterranean, sea storms basin are a quite common event especially during winter months. These scenarios are generally based on numerical models of tsunami wave propagation that can become more realistic and effective when calibrated with the distribution of true data acquired by special weather buoy. In this paper we present the result of an experimental weather buoy built by DEIM of University of Palermo, that is characterized by small cost and big versatility.

Tsunami waveSettore ING-IND/11 - Fisica Tecnica AmbientaleBuoyWeather buoyMeteorologysoftwarebuoyStormNumerical modelsStructural basinIndian oceanClimatologyEnvironmental sciencemarine techonologiesea wave
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Biology of gama delta T Cells in Tuberculosis and Malaria

2002

Tuberculosis and malaria remain the leading causes of mortality among human infectious diseases in the world. It is estimated that 3 to 5 million people die from tuberculosis and malaria each year. Although it is traditionally believed that CD4 and CD8 alphabeta T lymphocytes are mandatory for protective immune responses against Mycobacterium tuberculosis and Plasmodium falciparum (the ethiologic agents of tuberculosis and the most severe form of malaria, respectively), there is still incomplete understanding of the mechanisms of immune protection and of the causes of its failure in the affected patients. Several studies in humans and animal models have suggested that Vgamma9/Vdelta2 T cell…

TuberculosisT cellPlasmodium falciparumBiochemistryMycobacterium tuberculosisMiceImmune systemAntigenT-Lymphocyte Subsetsparasitic diseasesmedicineAnimalsHumansTuberculosisMalaria FalciparumMolecular BiologybiologyReceptors Antigen T-Cell gamma-deltaPlasmodium falciparumMycobacterium tuberculosisGeneral Medicinemedicine.diseasebiology.organism_classificationVirologyDisease Models Animalmedicine.anatomical_structureImmunologyMolecular MedicineCD8MalariaCurrent Molecular Medicine
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Theoretical study of the interaction between sodium ion and a cyclopeptidic tubular structure.

2007

DFT calculations have been carried out to describe the pathway of a sodium ion along the stacking direction of a tubular structure set up by five cyclopeptidic units, which can be considered a suitable model of a hollow tubular structure of indefinite length. A lattice of points inside the tubular structure is defined and the DFT interaction energy values with a sodium ion are obtained. The data allow predicting a zigzag path of the ion inside the hosting structure. © 2007 Wiley Periodicals, Inc. J Comput Chem, 2007

Tubular aggregates alkaline ions DFTModels MolecularNanotubes PeptideNanotubeChemistrySodiumSodiumStackingGlycineMolecular Conformationchemistry.chemical_elementGeneral ChemistryInteraction energyMolecular physicsPeptides CyclicIonComputational MathematicsZigzagComputational chemistryLattice (order)ThermodynamicsComputer SimulationOligopeptidesJournal of computational chemistry
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