Search results for "Neogenesis"

showing 10 items of 23 documents

Pathway network inference from gene expression data

2014

[EN] Background: The development of high-throughput omics technologies enabled genome-wide measurements of the activity of cellular elements and provides the analytical resources for the progress of the Systems Biology discipline. Analysis and interpretation of gene expression data has evolved from the gene to the pathway and interaction level, i.e. from the detection of differentially expressed genes, to the establishment of gene interaction networks and the identification of enriched functional categories. Still, the understanding of biological systems requires a further level of analysis that addresses the characterization of the interaction between functional modules. Results: We presen…

ESTADISTICA E INVESTIGACION OPERATIVAGene regulatory networkGene ExpressionInferenceSister chromatidsOxidative Phosphorylation//purl.org/becyt/ford/1 [https]Structural BiologyEstadística e Investigación OperativaGene Regulatory NetworksTopology (chemistry)Alzheimers-DiseaseGeneticsDIBUJOBiological systemsApplied MathematicsSystems BiologyCell Cycle//purl.org/becyt/ford/1.2 [https]Computer Science ApplicationsMicroarray experimentsModeling and SimulationIdentification (biology)Functional assessmentDNA-replicationFunctional connectionsGlycolysisCIENCIAS NATURALES Y EXACTASPathway NetworkDNA ReplicationSaccharomyces-CervisiaeBioinformaticsS-phaseSystems biologyGenomicsComputational biologySaccharomyces cerevisiaeBiologyGene interactionAlzheimer DiseaseModelling and SimulationGenomic dataPANAPathwaysMolecular BiologyUbiquitinResearchGene Expression ProfilingR packageGluconeogenesisGene expression profilingComputingMethodologies_PATTERNRECOGNITIONPurinesCiencias de la Computación e InformaciónProteolysisGene expression dataCiencias de la Información y BioinformáticaUbiquitin conjugationPathwayBMC Systems Biology
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Inhibition of gluconeogenesis by extracellular ATP in isolated rat hepatocytes.

1991

The aim of this study was to determine the effect of externally added ATP on gluconeogenesis by isolated hepatocytes from starved rats. High concentrations of extracellular ATP inhibited gluconeogenesis from lactate and pyruvate but not from glycerol or fructose. This inhibition was associated with an increase in intracellular adenosine contents. ADP, AMP, or adenosine but not guanosine 5'triphosphate, inosine 5' triphosphate, or adenine also inhibited gluconeogenesis. alpha, beta-Methylene-ATP, a nonmetabolizable structural analogue of ATP, did not affect the rate of gluconeogenesis. Intracellular ATP levels were increased by externally added ATP or adenosine, but ATP-to-ADP ratios in the…

GlycerolMalePhysiologyFructoseBiologyAdenosine TriphosphateAdenine nucleotidePhysiology (medical)Pyruvic AcidmedicineExtracellularAnimalsGlycolysisLactic AcidPyruvatesChemiosmosisGluconeogenesisRats Inbred StrainsMetabolismAdenosineRatsAdenosine DiphosphateBiochemistryGluconeogenesisLiverLactatesPhosphoenolpyruvate carboxykinasemedicine.drugThe American journal of physiology
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The desert gerbil Psammomys obesus as a model for metformin-sensitive nutritional type 2 diabetes to protect hepatocellular metabolic damage: Impact …

2017

Introduction While metformin (MET) is the most widely prescribed antidiabetic drug worldwide, its beneficial effects in Psammomys obesus (P. obesus), a rodent model that mimics most of the metabolic features of human diabetes, have not been explored thoroughly. Here, we sought to investigate whether MET might improve insulin sensitivity, glucose homeostasis, lipid profile as well as cellular redox and energy balance in P. obesus maintained on a high energy diet (HED). Materials and methods P. obesus gerbils were randomly assigned to receive either a natural diet (ND) consisting of halophytic plants (control group) or a HED (diabetic group) for a period of 24 weeks. MET (50 mg/kg per os) was…

Male0301 basic medicinePhysiologymedicine.medical_treatment[SDV]Life Sciences [q-bio]Body-WeightRespiratory chainlcsh:MedicineMitochondria LiverBiochemistrychemistry.chemical_compoundLiver Parenchymal-CellsEndocrinologyGlucose MetabolismAnimal CellsKetogenesisMedicine and Health SciencesElectrochemistryGlucose homeostasisGut Microbiotalcsh:ScienceEnergy-Producing OrganellesComputingMilieux_MISCELLANEOUS2. Zero hungerMultidisciplinaryOrganic CompoundsMonosaccharidesFatty AcidsChemical ReactionsLipidsMetforminMitochondria3. Good healthChemistryPhysiological ParametersLiverPhysical SciencesCarbohydrate MetabolismCellular Structures and OrganellesCellular TypesAnatomyOxidation-ReductionResearch Articlemedicine.medical_specialtyIsolated Rat HepatocytesEndocrine DisordersCarbohydratesBioenergeticsBiologyCarbohydrate metabolism03 medical and health sciencesInsulin resistanceInternal medicineFood-IntakeDiabetes MellitusmedicineAnimalsHypoglycemic AgentsObesityRespiratory-Chain[ SDV ] Life Sciences [q-bio]Fatty acid metabolismInsulinBody WeightOrganic Chemistrylcsh:RChemical CompoundsGluconeogenesisBiology and Life SciencesCell Biologymedicine.diseaseGlucose-6-Phosphate HydrolysisDisease Models AnimalGlucoseMetabolism030104 developmental biologyEndocrinologyDiabetes Mellitus Type 2GluconeogenesischemistryMetabolic DisordersHepatocyteslcsh:QInsulin ResistanceGerbillinaeGlucose-ProductionFatty-Acid-MetabolismOxidation-Reduction Reactions
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Neurogenin 3+ cells contribute to β-cell neogenesis and proliferation in injured adult mouse pancreas

2013

Abstract: We previously showed that injury by partial duct ligation (PDL) in adult mouse pancreas activates Neurogenin 3 (Ngn3)(+) progenitor cells that can differentiate to beta cells ex vivo. Here we evaluate the role of Ngn3(+) cells in beta cell expansion in situ. PDL not only induced doubling of the beta cell volume but also increased the total number of islets. beta cells proliferated without extended delay (the so-called 'refractory' period), their proliferation potential was highest in small islets, and 86% of the beta cell expansion was attributable to proliferation of pre-existing beta cells. At sufficiently high Ngn3 expression level, upto 14% of all beta cells and 40% of small i…

MaleCancer Researchmedicine.medical_specialtyendocrine systemCell- och molekylärbiologiImmunologyCellNerve Tissue Proteinsdigestive systemNeogenesisCellular and Molecular NeuroscienceMiceInternal medicineInsulin-Secreting CellsJournal ArticlemedicineBasic Helix-Loop-Helix Transcription FactorsAnimalsInsulinRegenerationProgenitor cellBeta (finance)PancreasCell ProliferationCell SizeMice Inbred BALB CbiologydiabetesCell growthResearch Support Non-U.S. Gov'tRegeneration (biology)Cell Biologybiology.organism_classificationCell biologytissue injurycell differentiationEndocrinologymedicine.anatomical_structureOriginal ArticleHuman medicinePancreasEx vivoCell and Molecular BiologyCell Death & Disease
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Effect of metal ion catalyzed oxidation of rifamycin SV on cell viability and metabolic performance of isolated rat hepatocytes.

1991

The effect of rifamycin SV on metabolic performance and cell viability was studied using isolated hepatocytes from fed, starved and glutathione (GSH) depleted rats. The relationships between GSH depletion, nutritional status of the cells, glucose metabolism, lactate dehydrogenase (LDH) leakage and malondialdehyde (MDA) production in the presence of rifamycin SV and transition metal ions was investigated. Glucose metabolism was impaired in isolated hepatocytes from both fed and starved animals, the effect is dependent on the rifamycin SV concentration and is enhanced by copper (II). Oxygen consumption by isolated hepatocytes from starved rats was also increased by copper (II) and a partial i…

MaleCell SurvivalIronLipid peroxidationchemistry.chemical_compoundOxygen ConsumptionLactate dehydrogenaseMalondialdehydemedicineAnimalsViability assayMolecular BiologybiologyL-Lactate DehydrogenaseChemistryGluconeogenesisRats Inbred StrainsCell BiologyGlutathioneMetabolismCatalaseThiobarbituratesGlutathioneRifamycinsRatsmedicine.anatomical_structureGluconeogenesisBiochemistryLiverCatalaseHepatocytebiology.proteinLipid PeroxidationOxidation-ReductionCopperBiochimica et biophysica acta
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Dependence of hepatic gluconeogenesis on PO2: inhibitory effects of halothane

1987

The dependence of gluconeogenesis and O2 uptake on PO2 in isolated rat hepatocytes is presented. Maintenance of steady-state PO2 was achieved with an oxystat system (Biochem. J. 236: 765–769, 1986). O2 uptake showed a half-maximal (K0.5) value of 0.5 Torr PO2, whereas the glucose synthesis rate was half-maximal at 1.2 Torr PO2. Halothane at concentrations greater than 1 mM exerted a parallel inhibition of O2 uptake and glucose synthesis at all PO2 levels studied. In contrast, at halothane concentrations less than 1 mM, inhibition of glucose synthesis occurred only at less than 20 Torr PO2. At these low concentrations, halothane was without significant effects on cellular O2 uptake. In isol…

Maleinorganic chemicalsmedicine.medical_specialtyHepatic gluconeogenesisPhysiologyMitochondria LiverIn Vitro TechniquesInhibitory postsynaptic potentialOxygen ConsumptionPhysiology (medical)Internal medicinemedicineAnimalsInhibitory effectVolume concentrationIsolated mitochondriaChemistryGluconeogenesisRats Inbred Strainsrespiratory systemRatsrespiratory tract diseasesOxygenKineticsEndocrinologyLiverGluconeogenesisTorrcardiovascular systemHalothaneHalothanecirculatory and respiratory physiologymedicine.drugJournal of Applied Physiology
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PTEN Deletion in Adult Mice Induces Hypoinsulinemia With Concomitant Low Glucose Levels

2022

The PI3K/AKT pathway, negatively regulated by PTEN, plays a paramount role in glucose metabolism regulation due to its activation by the insulin receptor signaling pathway. We generated a PTEN-KO mouse to evaluate the systemic effect of the overactivation of the PI3K/AKT pathway in insulin signaling and glucose homeostasis. Our results demonstrate that PTEN-KO mice show very low glucose levels in the fasted state, which poorly respond to glucose and pyruvate administration. Insulinemia decreased without alterations in pancreatic islets. Among the possible reasons, we uncover the deregulation of the expression of proximal tubule glucose transporter and consequent glycosuria. Moreover, we evi…

Mice KnockoutBioquímicaMicePhosphatidylinositol 3-KinasesBiologiaGlucoseEndocrinology Diabetes and MetabolismGluconeogenesisPTEN PhosphohydrolaseAnimalsInsulinEndocrine System DiseasesProto-Oncogene Proteins c-akt
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Argan oil prevents down-regulation induced by endotoxin on liver fatty acid oxidation and gluconeogenesis and on peroxisome proliferator-activated re…

2015

In patients with sepsis, liver metabolism and its capacity to provide other organs with energetic substrates are impaired. This and many other pathophysiological changes seen in human patients are reproduced in mice injected with purified endotoxin (lipopolysaccharide, LPS). In the present study, down-regulation of genes involved in hepatic fatty acid oxidation (FAOx) and gluconeogenesis in mice exposed to LPS was challenged by nutritional intervention with Argan oil. Mice given a standard chow supplemented or not with either 6% (w/w) Argan oil (AO) or 6% (w/w) olive oil (OO) prior to exposure to LPS were explored for liver gene expressions assessed by mRNA transcript levels and/or enzyme a…

Peroxisome proliferator-activated receptor gammamedicine.medical_specialtyOO olive oilResearch paper[SDV]Life Sciences [q-bio]Peroxisome proliferator-activated receptorBiologyBiochemistryNuclear receptor 30lcsh:BiochemistryEstrogen-related receptorEstrogen-related receptor alphaInternal medicineACADS acyl CoA dehydrogenase short-chainACADL acyl CoA dehydrogenase long-chainmedicinePGC-1α peroxisome proliferator-activated receptor γ coactivator-1αlcsh:QD415-436ReceptorBeta oxidationHNF-4α hepatic nuclear factor-4αchemistry.chemical_classificationACADM acyl CoA dehydrogenase medium-chainPPARα peroxisome proliferator-activated receptor αERRα estrogen related receptor α[ SDV ] Life Sciences [q-bio]PEPCK phospoenolpyruvate carboxykinaseGluconeogenesisBeta-oxidationGlut4 glucose transporter 4[SDV] Life Sciences [q-bio]G6PH glucose-6-phosphataseEndocrinologyGlut2 glucose transporter 2chemistryNuclear receptorArgan oilAO Argan oilNuclear receptorACOX1 acyl-CoA oxidase 1CoactivatorLPS lipopolysaccharidePeroxisome proliferator-activated receptor alpha
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Potential role of branched-chain amino acid catabolism in regulating fat oxidation.

2013

Insulin-resistant or obese individuals have increased serum branched-chain amino acid (BCAA) levels. Recent findings relate increased BCAA catabolism to increased fatty acid oxidation and better metabolic health in physically active individuals. We hypothesize that, via glyceroneogenesis, BCAA catabolism mediates increased constitutive use of fatty acids for β-oxidation in subjects with increased inherent or acquired aerobic capacity both during exercise and at rest.

chemistry.chemical_classificationCatabolismChemistryBranched-chain amino acidPhysical Therapy Sports Therapy and RehabilitationAmino acidProtein catabolismchemistry.chemical_compoundFat oxidationBiochemistryAdipose TissueGlyceroneogenesisAnimalsHumansOrthopedics and Sports MedicineObesityMuscle SkeletalBeta oxidationExerciseOxidation-ReductionAerobic capacityAmino Acids Branched-ChainExercise and sport sciences reviews
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Simulation of Metabolism for The Calculation of Enzyme Activities in Stress Metabolism

1988

Abstract Using data of indirect calorimetry, total energy turnover as well as the rate of combustion of carbohydrates, fat and amino acids can be calculated. For the evaluation, simple standard procedures (4) are used. These procedures presume, that several assumptions are satisfied, e.g. a complete degradation of the energy delivering substrates and undisturbed enzyme activities. To be able to interprete also measurements, which are performed in the post-traumatic state as well as for estimation of the extent and consequences of reduced enzyme activities, a new method for the simulation of metabolism was developed. Hie underlying model considers a reduced activity of key enzymes and a swit…

chemistry.chemical_classificationEnzymechemistryBiochemistryGluconeogenesisDegradation (geology)Substrate (chemistry)MetabolismCalorimetryPyruvate dehydrogenase complexAmino acidIFAC Proceedings Volumes
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