Search results for "Phylogenetics"

A geographical pattern ofAntirrhinum(Scrophulariaceae) speciation since the Pliocene based on plastid and nuclear DNA polymorphisms

2009

Aim To infer phylogenetic relationships among Antirrhinum species and to reconstruct the historical distribution of observed sequence polymorphism through estimates of haplotype clades and lineage divergence. Location Antirrhinum is distributed primarily throughout the western Mediterranean, with 22 of 25 species in the Iberian Peninsula. Methods Plastid (83 trnS-trnG and 83 trnK-matK) and nuclear (87 ITS) sequences were obtained from 96 individuals representing 24 of the 25 Antirrhinum species. Sequences were analysed using maximum parsimony, Bayesian inference and statistical parsimony networking. Molecular clock estimates were obtained for plastid trnK-matK sequences using the penalized …

CONSTRUCTING, BOOTSTRAPPING, AND COMPARING MORPHOMETRIC AND PHYLOGENETIC TREES: A CASE STUDY OF NEW WORLD MONKEYS (PLATYRRHINI, PRIMATES)

2005

Morphometric data sets are often phenetically analyzed by using various kinds of spatial, metric, or nonmetric multivariate analyses. Such methods produce results that are difficult to compare directly with molecular or morphological phylogenetic hypotheses, which are usually expressed by using nonspatial tree representations. Therefore, it is useful in a comparative approach to analyze, and above all to visualize, morphometric pairwise relationships as tree structures. For this purpose, several additive or ultrametric methods exist, which often return different topologies for the same data set. Objective criteria are thus needed to identify the tree-building algorithm (or algorithm family)…

What does Cryptocercus kyebangensis, n.sp. (Dictyoptera: Blattaria: Polyphagidae) from Korea reveal about Cryptocercus evolution? A study in morpholo…

2001

doi: 10.1635/0097-3157(2001)151[0061:WDCKNS]2.0.CO;2 0097-3157 doi: 10.1635/0097-3157(2001)151[0061:WDCKNS]2.0.CO;2; The description of a new species of the woodroach Cryptocercus kyebangensis Grandcolas from South Korea offers the opportunity to bring comparative information within the genus. This species, though morphologically very similar to other East Asian and North American species, presents conspicuous differentiation of both ribosomal genes (sequenced fragments of 12S and 16S) and chemical blends from tergal glands (proportions of linalyl acetate and the alcohol 4, 6, 8-trimethyl-7, 9-undecadien-5-ol, compounds previously identified in females originating from North America). A phy…

2015

Songs in passerine birds are important for territory defense and mating. Speciation rates in oscine passerines are so high, due to cultural evolution, that this bird lineage makes up half of the extant bird species. Leaf warblers are a speciose Old-World passerine family of limited morphological differentiation, so that songs are even more important for species delimitation. We took 16 sonographic traits from song recordings of 80 leaf warbler taxa and correlated them with 15 potentially explanatory variables, pairwise, and in linear models. Based on a well-resolved molecular phylogeny of the same taxa, all pairwise correlations were corrected for relatedness with phylogenetically independe…

Phylogenetic reconstruction of the yeast genus Kluyveromyces: restriction map analysis of the 5.8S rRNA gene and the two ribosomal internal transcrib…

1998

Summary We have constructed restriction site maps of the 5.8S rRNA gene and the two ITS regions in 60 strains of Kluyveromyces genus. We test the value of this region as a phylogenetic indicator, and its possible use as a fast and easy method to identify species of this genus. Despite some minor incongruences, our results are in good agreement with previous phylogenetic reconstructions based on the 18S rRNA gene sequencing (Cai et al., 1996; James et al., 1997). A highly significant monophyletic group was formed by K. lactis, K. marxianus, K. aestuarii, K. dobzhanskii and K. wickerhamii, which should be considered the true Kluyveromyces genus. The other species of the genus were grouped wit…

Polypeptide Markers Differentiating Juvenile and Adult Tissues in Chestnut

1993

Differences were observed between the polypeptide contents of in vitro shoot cultures derived from upper branches (adult material) and basal shoots (juvenile material) of the same chestnut tree. Cultures derived from mature crown growth yielded two polypeptide bands that were not afforded by cultures derived from juvenile basal shoots. Since all cultures were derived from the same tree the polypeptide differences appear to reflect the ontogenetic age of the starting material.

TERRE project: interplay between unsaturated soil mechanics and low-carbon geotechnical engineering

2020

The geotechnical construction industry is a major component of the overall construction sector and is strategically important in infrastructure development (transportation, flood and landslide protection, building foundations, waste disposal). Although industry and research in the overall construction sector have been investing significantly in recent years to produce innovative low-carbon technologies, little innovation has been created in geotechnical construction industry, which is lagging behind other construction industry sectors. This paper discusses the interplay between low-carbon geotechnical engineering and unsaturated soil mechanics based on the research carried out within the pr…

Comparative genomic and phylogenetic analyses of gammaproteobacterial glg genes traced the origin of the Escherichia coli glycogen glgBXCAP operon to…

2015

© 2015 Almagro et al. Production of branched α-glucan, glycogen-like polymers is widely spread in the Bacteria domain. The glycogen pathway of synthesis and degradation has been fairly well characterized in the model enterobacterial species Escherichia coli (order Enterobacteriales, class Gammaproteobacteria), in which the cognate genes (branching enzyme glgB, debranching enzyme glgX, ADP-glucose pyrophosphorylase glgC, glycogen synthase glgA, and glycogen phosphorylase glgP) are clustered in a glgBXCAP operon arrangement. However, the evolutionary origin of this particular arrangement and of its constituent genes is unknown. Here, by using 265 complete gammaproteobacterial genomes we have …

Retarded Elimination of a High-Molecular Enzyme-Substrate-Complex after Hydroxyethyl-Starch-Infusion

1978

During a pharmacokinetic study with hydroxyethyl starch we found, that this plasma substitute induces a regular increase of serum amylase. In 54 patients after infusion of 500 ml 6% hydroxyethyl starch (HES) an increase of serum amylase was observed, which in 51 cases exceeded the upper limit of normal (190 U/l). In most cases serum amylase reached values twice as high as the basal value. Renal function influenced duration of increased serum amylase values, but did not influence maximum increases (201 ±15 U/l; mean ± SEM). In patients with advanced renal failure (GFR = 2–10 ml/min) serum amylase was still markedly elevated after 72 hours (298 ± U/l; mean ± SEM). In patients with normal rena…

Lymnaea schirazensis, an Overlooked Snail Distorting Fascioliasis Data: Genotype, Phenotype, Ecology, Worldwide Spread, Susceptibility, Applicability

2011

BackgroundLymnaeid snails transmit medical and veterinary important trematodiases, mainly fascioliasis. Vector specificity of fasciolid parasites defines disease distribution and characteristics. Different lymnaeid species appear linked to different transmission and epidemiological patterns. Pronounced susceptibility differences to absolute resistance have been described among lymnaeid populations. When assessing disease characteristics in different endemic areas, unexpected results were obtained in studies on lymnaeid susceptibility to Fasciola. We undertook studies to understand this disease transmission heterogeneity.Methodology/principal findingsA ten-year study in Iran, Egypt, Spain, t…