Search results for "Platyhelminths"

showing 10 items of 24 documents

Topological congruence between phylogenies of Anacanthorus spp. (Monogenea: Dactylogyridae) and their Characiformes (Actinopterygii) hosts: A case of…

2017

Cophylogenetic studies aim at testing specific hypotheses to understand the nature of coevolving associations between sets of organisms, such as host and parasites. Monogeneans and their hosts provide and interesting platform for these studies due to their high host specificity. In this context, the objective of the present study was to establish whether the relationship between Anacanthorus spp. with their hosts from the upper Paraná River and its tributaries can be explained by means of cospeciation processes. Nine fish species and 14 monogenean species, most of them host specific, were studied. Partial DNA sequences of the genes RAG1, 16S and COI of the fish hosts and of the genes ITS2, …

0106 biological sciences0301 basic medicineSpeciationlcsh:MedicineAnimal PhylogeneticsCharaciformes01 natural sciencesDatabase and Informatics MethodsRNA Ribosomal 16Slcsh:ScienceDNA extractionPhylogenyData ManagementMultidisciplinaryGeographyPhylogenetic treebiologyEukaryotaPhylogenetic AnalysisPhylogeneticsFreshwater FishPhylogeographyBiogeographyVertebratesCharaciformesSequence AnalysisMonogeneaResearch ArticleComputer and Information SciencesEvolutionary ProcessesBioinformaticsContext (language use)Topology010603 evolutionary biologyHost-Parasite InteractionsElectron Transport Complex IV03 medical and health sciencesExtraction techniquesPhylogeneticsGeneticsAnimalsEvolutionary SystematicsParasite EvolutionTaxonomyHomeodomain ProteinsEvolutionary BiologyPopulation BiologyHost (biology)lcsh:REcology and Environmental SciencesOrganismsBiology and Life SciencesDNASequence Analysis DNAbiology.organism_classificationDactylogyridaeResearch and analysis methodsPhylogeographyFish030104 developmental biologyPlatyhelminthsEarth Scienceslcsh:QParasitologyZoologySequence AlignmentPopulation GeneticsPLOS ONE
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EST based phylogenomics of Syndermata questions monophyly of Eurotatoria

2008

Abstract Background The metazoan taxon Syndermata comprising Rotifera (in the classical sense of Monogononta+Bdelloidea+Seisonidea) and Acanthocephala has raised several hypotheses connected to the phylogeny of these animal groups and the included subtaxa. While the monophyletic origin of Syndermata and Acanthocephala is well established based on morphological and molecular data, the phylogenetic position of Syndermata within Spiralia, the monophyletic origin of Monogononta, Bdelloidea, and Seisonidea and the acanthocephalan sister group are still a matter of debate. The comparison of the alternative hypotheses suggests that testing the phylogenetic validity of Eurotatoria (Monogononta+Bdel…

0106 biological sciencesCharacter evolutionEvolutionRotiferaZoologyBiology010603 evolutionary biology01 natural sciencesAcanthocephalaEvolution Molecular03 medical and health sciencesMonophylyPhylogeneticsHelminthsQH359-425RNA Ribosomal 18SAnimalsBdelloideaPhylogenyEcology Evolution Behavior and Systematics030304 developmental biologyExpressed Sequence Tags0303 health sciencesPhylogenetic treeSyndermata; phylogenetic positionGenomicsSequence Analysis DNADNA Helminthbiology.organism_classificationGenetics PopulationSister groupPlatyhelminthsEvolutionary biologyMolecular phylogeneticsAcanthocephalaResearch ArticleBMC Evolutionary Biology
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Acting locally - affecting globally: RNA sequencing of gilthead sea bream with a mild Sparicotyle chrysophrii infection reveals effects on apoptosis,…

2019

[Background] Monogenean flatworms are the main fish ectoparasites inflicting serious economic losses in aquaculture. The polyopisthocotylean Sparicotyle chrysophrii parasitizes the gills of gilthead sea bream (GSB, Sparus aurata) causing anaemia, lamellae fusion and sloughing of epithelial cells, with the consequent hypoxia, emaciation, lethargy and mortality. Currently no preventive or curative measures against this disease exist and therefore information on the host-parasite interaction is crucial to find mitigation solutions for sparicotylosis. The knowledge about gene regulation in monogenean-host models mostly comes from freshwater monopysthocotyleans and almost nothing is known about …

0106 biological sciencesGillGillsApoptosis01 natural sciencesTranscriptomeSparus aurataGene expression0303 health sciencesHigh-Throughput Nucleotide Sequencingmedicine.anatomical_structureLiverHelminthiasis AnimalMonogeneaBiotechnologyResearch ArticleFish Proteinsanimal structureslcsh:QH426-470lcsh:BiotechnologyFisheriesSpleenBiologyMicrobiologyHost-Parasite Interactions03 medical and health sciencesImmune systemIllumina RNA-seqImmunitylcsh:TP248.13-248.65GeneticsmedicineAutophagyAnimals14. Life underwaterPlatelet activationImmune responseTranscriptomics030304 developmental biologyCell ProliferationSequence Analysis RNASparus aurata Sparicotyle chrysophrii Gills Monogenea Ectoparasites Illumina RNA-seq Transcriptomics Apoptosis Immune responseGene Expression ProfilingAquatic animalSea Breamlcsh:GeneticsGene Expression RegulationPlatyhelminthsSparicotyle chrysophriiEctoparasitesSpleen010606 plant biology & botany
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A clustering package for nucleotide sequences using Laplacian Eigenmaps and Gaussian Mixture Model.

2018

International audience; In this article, a new Python package for nucleotide sequences clustering is proposed. This package, freely available on-line, implements a Laplacian eigenmap embedding and a Gaussian Mixture Model for DNA clustering. It takes nucleotide sequences as input, and produces the optimal number of clusters along with a relevant visualization. Despite the fact that we did not optimise the computational speed, our method still performs reasonably well in practice. Our focus was mainly on data analytics and accuracy and as a result, our approach outperforms the state of the art, even in the case of divergent sequences. Furthermore, an a priori knowledge on the number of clust…

0301 basic medicineNematoda01 natural sciencesGaussian Mixture Model[STAT.ML]Statistics [stat]/Machine Learning [stat.ML][MATH.MATH-ST]Mathematics [math]/Statistics [math.ST]ComputingMilieux_MISCELLANEOUScomputer.programming_language[STAT.AP]Statistics [stat]/Applications [stat.AP]Phylogenetic treeDNA ClusteringGenomicsHelminth ProteinsComputer Science Applications[STAT]Statistics [stat]010201 computation theory & mathematics[INFO.INFO-MA]Computer Science [cs]/Multiagent Systems [cs.MA]Data analysisEmbeddingA priori and a posteriori[INFO.INFO-DC]Computer Science [cs]/Distributed Parallel and Cluster Computing [cs.DC]Health Informatics0102 computer and information sciences[INFO.INFO-SE]Computer Science [cs]/Software Engineering [cs.SE]Biology[INFO.INFO-IU]Computer Science [cs]/Ubiquitous Computing03 medical and health sciences[INFO.INFO-CR]Computer Science [cs]/Cryptography and Security [cs.CR]Laplacian EigenmapsAnimalsCluster analysis[SDV.GEN]Life Sciences [q-bio]/GeneticsModels Geneticbusiness.industryPattern recognitionNADH DehydrogenaseSequence Analysis DNAPython (programming language)Mixture model[INFO.INFO-MO]Computer Science [cs]/Modeling and SimulationVisualization030104 developmental biologyComputingMethodologies_PATTERNRECOGNITIONPlatyhelminths[INFO.INFO-ET]Computer Science [cs]/Emerging Technologies [cs.ET]Programming LanguagesArtificial intelligence[INFO.INFO-BI]Computer Science [cs]/Bioinformatics [q-bio.QM]businesscomputerComputers in biology and medicine
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Infracommunity level aggregation in the monogenean communities of crucian carp (Carassius carassius).

2005

Aggregation is one of the distinctive features in parasite-host relationships, which has generally been studied at the level of host communities. Parasite aggregation at the infracommunity level may nevertheless be important for intraspecific interactions such as parasite mating success and opportunities for cross-fertilization. In the present paper, we studied the infracommunity aggregation of 3 highly abundantDactylogyrus(Monogenea) species occurring on the gills of crucian carp (Carassius carassius). In line with the previous work on monogenean communities, we observed no competition between the species. At the species level, parasites were distributed unevenly on the gills showing aggre…

DactylogyrusGillsCarpsbiologyEcologymedia_common.quotation_subjectCarassius carassiusInterspecific competitionbiology.organism_classificationIntraspecific competitionCompetition (biology)Host-Parasite InteractionsInfectious DiseasesPlatyhelminthsCrucian carpParasite hostingAnimalsAnimal Science and ZoologyParasitologyMatingmedia_commonParasitology
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Interspecific and intraspecific interactions in the monogenean communities of fish: a question of study scale?

2007

SUMMARYMonogenean communities of fish have generally been considered non-interactive as negative interspecific interactions have rarely been reported. Most of the earlier studies on monogenean communities, however, have been conducted not only in systems with relatively low parasite abundances but, more importantly, at study scales where microhabitat-level interactions between the parasites are easily overlooked. We examined the communities of 3 abundant Dactylogyrus (Monogenea) species on the gills of crucian carp (Carassius carassius) by analysing the interactions at the scale of individual gill filaments, where interactions between the species, if any, should most likely take place. Cont…

Ecological nicheDactylogyrusGillsbiologyEcologyCarassius carassiusmedia_common.quotation_subjectNicheCyprinidaeInterspecific competitionBiodiversitybiology.organism_classificationCompetition (biology)Intraspecific competitionHost-Parasite InteractionsInfectious DiseasesSpecies SpecificityPlatyhelminthsAnimalsAnimal Science and ZoologyParasitologyMonogeneamedia_commonParasitology
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Diclidophora merlangi (Monogenea: Diclidophoridae) on Atlantic cod, Gadus morhua.

2006

Diclidophora merlangi (Kuhn, in Nordmann, 1832), as species specific to whiting, Merlangius merlangus (Linnaeus, 1758), is reported and described for the first time on the gills of Atlantic cod Gadus morhua (Linnaeus, 1758). Of the about 1,200 cod examined in this article, only 2 specimens of D. merlangi occurred on 2 fish, suggesting that they represented accidental infections. The 2 specimens showed specific traits of D. merlangi, but their size was considerably smaller than that of D. merlangi on whiting. Principal-component analyses showed that the morphology of the specimens on cod was more similar to that of D. merlangi than those of other congeneric species from the North Atlantic, a…

GillGillsMalePrincipal Component AnalysisbiologyReproductionZoologyTrematode InfectionsGadidaebiology.organism_classificationWhitingHost-Parasite InteractionsFisheryMerlangius merlangusFish DiseasesGadus morhuaPlatyhelminthsParasite hostingGadusAnimalsParasitologyFemaleAtlantic codEcology Evolution Behavior and SystematicsMonogeneaThe Journal of parasitology
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Ligophorus pilengas n. sp. (monogenea: ancyrocephalidae) from the introduced so-iuy mullet, mugil soiuy (teleostei: mugilidae), in the sea of Azov an…

2004

The monogenean Ligophorus chabaudi was originally described on the gills of the flathead mullet, Mugil cephalus, and was subsequently reported on the So-iuy mullet, Mugil soiuy. However, the morphology of sclerotized parts and multivariate statistical analyses suggest that the form from the So-iuy mullet represents a new species. This study provides a description of the new species Ligophorus pilengas n. sp. and provides additional morphological data concerning the morphology of the ventral bar that might be useful for the diagnosis of Ligophorus. Ligophorus pilengas n. sp. is the second species of Ligophorus reported on the So-iuy mullet. Zoogeographical records indicate that L. pilengas n…

GillGillsTrematode InfectionsLigophorus pilengas ; Ancyrocephalide ; Monogen ; Azov Sea ; Black Sea:CIENCIAS DE LA VIDA [UNESCO]MulletFish DiseasesAncyrocephalideAzov SeaUNESCO::CIENCIAS DE LA VIDAAnimalsMicroscopy InterferenceMicroscopy Phase-ContrastSeawaterFlatheadEcology Evolution Behavior and SystematicsLigophorus pilengasTeleosteibiologyMugilLigophorus pilengasSo-iuy mullet:CIENCIAS DE LA VIDA::Biología animal (Zoología) ::Parasitología animal [UNESCO]Discriminant Analysisbiology.organism_classificationSmegmamorphaFisheryUNESCO::CIENCIAS DE LA VIDA::Biología animal (Zoología) ::Parasitología animalBlack SeaPlatyhelminthsMonogenParasitologyUkraineMonogenea
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Evolutionary morphology in shape and size of haptoral anchors in 14 Ligophorus spp. (Monogenea: Dactylogyridae).

2017

The search for phylogenetic signal in morphological traits using geometric morphometrics represents a powerful approach to estimate the relative weights of convergence and shared evolutionary history in shaping organismal form. We assessed phylogenetic signal in the form of ventral and dorsal haptoral anchors of 14 species of Ligophorus occurring on grey mullets (Osteichthyes: Mugilidae) from the Mediterranean, the Black Sea and the Sea of Azov. The phylogenetic relationships among these species were mapped onto the morphospaces of shape and size of dorsal and ventral anchors and two different tests were applied to establish whether the spatial positions in the morphospace were dictated by …

Gills0106 biological sciences0301 basic medicinelcsh:MedicineMorphology (biology)Animal Phylogenetics01 natural sciencesEcologia marinaMathematical and Statistical Techniqueslcsh:SciencePhylogenyData ManagementPrincipal Component AnalysisMultidisciplinarybiologyPhylogenetic treePhylogenetic AnalysisPeixosBiological EvolutionSmegmamorphaPhylogeneticsPhenotypePhysical SciencesStatistics (Mathematics)MonogeneaResearch ArticleComputer and Information SciencesEvolutionary ProcessesParàsitsImaging TechniquesZoologyResearch and Analysis Methods010603 evolutionary biologyHost SpecificityHost-Parasite Interactions03 medical and health sciencesSpecies SpecificityPhylogeneticsAnimalsEvolutionary SystematicsParasite EvolutionStatistical MethodsTaxonomyMorphometricsEvolutionary BiologyEvolutionary Developmental BiologyMorphometrylcsh:RBiology and Life Sciencesbiology.organism_classificationDactylogyridae030104 developmental biologyPlatyhelminthsMultivariate AnalysisEvolutionary developmental biologyParasitologylcsh:QAllometryZoologyMathematicsDevelopmental BiologyPLoS ONE
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Paradiplozoon iraqensis n. sp. (Monogenea: Diplozoinae) from Cyprinion macrostomum (Cyprinidae) in the Tigris River, Iraq

2015

A new species of monogenean diplozoid, Paradiplozoon iraqensis n. sp., from the gills of Cyprinion macrostomum Heckel from the Tigris River in Tikrit, Iraq is described. P. iraqensis n. sp. is distinguished from other species of the genus by the size of plicae on the fore- and hind body, the number of the branches of the intestinal caecum in fore body, intestinal caecum not extending to haptor, the size of the clamps and the morphology of the clamp sclerites, and by the length of the central hooks. Details of the shape and size of eggs, and of the reproductive system and prohaptoral region are provided. The present study raises the number of species of Paradiplozoon recorded in Iraq to 15.

Gills0301 basic medicineGillMicroscopybiologyCyprinidaeZoology030108 mycology & parasitologybiology.organism_classificationCyprinion macrostomumFish Diseases03 medical and health sciencesRiversPlatyhelminthsGenusIraqHaptorCyprinidaeAnimalsFish <Actinopterygii>ParasitologyMonogeneaActa Parasitologica
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