Search results for "Simulation."

showing 10 items of 4779 documents

Cubic smoothing splines background correction in on-line liquid chromatography–Fourier transform infrared spectrometry

2010

A background correction method for the on-line coupling of gradient liquid chromatography and Fourier transform infrared spectrometry (LC-FTIR) is proposed. The developed approach applies univariate background correction to each variable (i.e. each wave number) individually. Spectra measured in the region before and after each peak cluster are used as knots to model the variation of the eluent absorption intensity with time using cubic smoothing splines (CSS) functions. The new approach has been successfully tested on simulated as well as on real data sets obtained from injections of standard mixtures of polyethylene glycols with four different molecular weights in methanol:water, 2-propano…

Analytical chemistrySensitivity and SpecificityBiochemistryPolyethylene GlycolsAnalytical ChemistryMatrix (chemical analysis)ChemometricsSmoothing splinesymbols.namesakeSpectroscopy Fourier Transform InfraredCalibrationComputer SimulationFourier transform infrared spectroscopyAnalysis of VarianceChromatographyElutionChemistryOrganic ChemistryGreen Chemistry TechnologyGeneral MedicineFourier transformAlcoholsLinear ModelssymbolsBackground Correction MethodAlgorithmsChromatography LiquidJournal of Chromatography A
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Ancestral Reconstruction and Investigations of Genomic Recombination on some Pentapetalae Chloroplasts

2019

Abstract In this article, we propose a semi-automated method to rebuild genome ancestors of chloroplasts by taking into account gene duplication. Two methods have been used in order to achieve this work: a naked eye investigation using homemade scripts, whose results are considered as a basis of knowledge, and a dynamic programming based approach similar to Needleman-Wunsch. The latter fundamentally uses the Gestalt pattern matching method of sequence matcher to evaluate the occurrences probability of each gene in the last common ancestor of two given genomes. The two approaches have been applied on chloroplastic genomes from Apiales, Asterales, and Fabids orders, the latter belonging to Pe…

Ancestral reconstructionMost recent common ancestor0206 medical engineeringGenomic recombination02 engineering and technology[INFO.INFO-SE]Computer Science [cs]/Software Engineering [cs.SE]Dynamic programmingGenome[INFO.INFO-IU]Computer Science [cs]/Ubiquitous ComputingEvolution Molecular[INFO.INFO-CR]Computer Science [cs]/Cryptography and Security [cs.CR]AsteralesGene duplication0202 electrical engineering electronic engineering information engineeringPattern matchingGenome ChloroplastRosaceaeResearch ArticlesPhylogenySequence (medicine)Recombination GeneticbiologyGeneral Medicinebiology.organism_classification[INFO.INFO-MO]Computer Science [cs]/Modeling and SimulationAncestral genome reconstructionApialesEvolutionary biology[INFO.INFO-MA]Computer Science [cs]/Multiagent Systems [cs.MA]020201 artificial intelligence & image processing[INFO.INFO-ET]Computer Science [cs]/Emerging Technologies [cs.ET][INFO.INFO-DC]Computer Science [cs]/Distributed Parallel and Cluster Computing [cs.DC]Pentapetalae chloroplasts020602 bioinformaticsTP248.13-248.65BiotechnologyJournal of Integrative Bioinformatics
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Angiogenic activity of breast cancer patients' monocytes reverted by combined use of systems modeling and experimental approaches.

2015

Angiogenesis plays a key role in tumor growth and cancer progression. TIE-2-expressing monocytes (TEM) have been reported to critically account for tumor vascularization and growth in mouse tumor experimental models, but the molecular basis of their pro-angiogenic activity are largely unknown. Moreover, differences in the pro-angiogenic activity between blood circulating and tumor infiltrated TEM in human patients has not been established to date, hindering the identification of specific targets for therapeutic intervention. In this work, we investigated these differences and the phenotypic reversal of breast tumor pro-angiogenic TEM to a weak pro-angiogenic phenotype by combining Boolean m…

AngiogenesisQH301-705.5In silicoBreast NeoplasmsMice TransgenicKaplan-Meier EstimateBiologyModels BiologicalMonocytesCell Line03 medical and health sciencesCellular and Molecular NeuroscienceMice0302 clinical medicineBreast cancerGeneticsmedicineAnimalsHumansBiology (General)Molecular BiologyEcology Evolution Behavior and Systematics030304 developmental biology0303 health sciencesTumor microenvironmentEcologyNeovascularization PathologicComputational BiologyNeoplasms ExperimentalTumor-DerivedMiddle Agedmedicine.diseasePhenotype3. Good healthGene expression profilingPhenotypeComputational Theory and Mathematics030220 oncology & carcinogenesisModeling and SimulationImmunologyCancer researchCytokinesFemaleSignal transductionResearch ArticleSignal TransductionPLoS Computational Biology
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Characteristics of the early flight phase in the Olympic ski jumping competition.

2004

Early flight phase (approximately 40 m) of the athletes participating in the final round of the individual large hill ski jumping competition in Salt Lake City Olympics was filmed with two high-speed pan & tilt video cameras. The results showed that jumpers' steady flight position was almost completed within 0.5s. The most significant correlation with the length of the jump was found in the angle between the skis and body (r=.714, p.001 at 1.1s after the take-off). This particular phase seemed to be important because the ski angle of attack was also related to the jumping distance at the same phase. Although the more upright ski position relative to flight path resulted in longer jumping di…

Angle of attackAltitudeRehabilitationBiomedical EngineeringBiophysicsPhase (waves)Steady flightVideotape RecordingEffects of high altitude on humansSki jumpingmedicine.disease_causeModels BiologicalBiomechanical PhenomenaCompetition (economics)JumpingAeronauticsSkiingmedicineJumpHumansOrthopedics and Sports MedicineComputer SimulationMathematicsJournal of biomechanics
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The planar two-body problem for spheroids and disks

2021

We outline a new method suggested by Conway (2016) for solving the two-body problem for solid bodies of spheroidal or ellipsoidal shape. The method is based on integrating the gravitational potential of one body over the surface of the other body. When the gravitational potential can be analytically expressed (as for spheroids or ellipsoids), the gravitational force and mutual gravitational potential can be formulated as a surface integral instead of a volume integral, and solved numerically. If the two bodies are infinitely thin disks, the surface integral has an analytical solution. The method is exact as the force and mutual potential appear in closed-form expressions, and does not invol…

Angular momentumInertial frame of reference010504 meteorology & atmospheric sciencesFOS: Physical sciencesTwo-body problem01 natural sciencesVolume integralGravitational potential0103 physical sciences010303 astronomy & astrophysicsMathematical Physics0105 earth and related environmental sciencesEarth and Planetary Astrophysics (astro-ph.EP)PhysicsVDP::Matematikk og Naturvitenskap: 400::Fysikk: 430Applied MathematicsSurface integralEquations of motionAstronomy and AstrophysicsComputational Physics (physics.comp-ph)EllipsoidComputational MathematicsClassical mechanicsSpace and Planetary ScienceModeling and SimulationPhysics - Computational PhysicsAstrophysics - Earth and Planetary AstrophysicsCelestial Mechanics and Dynamical Astronomy
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Production and detection of atomic hexadecapole at Earth's magnetic field

2007

Anisotropy of atomic states is characterized by population differences and coherences between Zeeman sublevels. It can be efficiently created and probed via resonant interactions with light, the technique which is at the heart of modern atomic clocks and magnetometers. Recently, nonlinear magneto-optical techniques have been developed for selective production and detection of higher polarization moments, hexadecapole and hexacontatetrapole, in the ground states of the alkali atoms. Extension of these techniques into the range of geomagnetic fields is important for practical applications. This is because hexadecapole polarization corresponding to the $\Delta M=4$ Zeeman coherence, with maxim…

Angular momentumLightEarth PlanetMagnetometerAtomic Physics (physics.atom-ph)TransducersPopulationFOS: Physical sciencesRadiation Dosagelaw.inventionPhysics - Atomic PhysicsMagneticssymbols.namesakelawPhysical Sciences and MathematicsScattering RadiationComputer SimulationPhysics::Atomic PhysicsRadiometryAnisotropyeducationPhysicseducation.field_of_studyZeeman effectEquipment DesignModels TheoreticalPolarization (waves)Atomic and Molecular Physics and OpticsAtomic clockMagnetic fieldEquipment Failure AnalysisBudker [BRII recipient]symbolsComputer-Aided DesignAtomic physicsEnvironmental Monitoring
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A second strain gradient elasticity theory with second velocity gradient inertia – Part II: Dynamic behavior

2013

Abstract This paper is the sequel of a companion Part I paper devoted to the constitutive equations and to the quasi-static behavior of a second strain gradient material model with second velocity gradient inertia. In the present Part II paper, a multi-cell homogenization procedure (developed in the Part I paper) is applied to a nonhomogeneous body modelled as a simple material cell system, in conjunction with the principle of virtual work (PVW) for inertial actions (i.e. momenta and inertia forces), which at the macro-scale level takes on the typical format as for a second velocity gradient inertia material model. The latter (macro-scale) PVW is used to determine the equilibrium equations …

Angular momentummedia_common.quotation_subjectRotary inertiaPolhodeContinuum thermodynamicsInertiaMoment of inertia factorsymbols.namesakeMaterials Science(all)Modelling and SimulationGeneral Materials ScienceEuler's equationsmedia_commonMathematicsWave propagationApplied MathematicsMechanical EngineeringMathematical analysisMoment of inertiaCondensed Matter PhysicsRigid body dynamicsDynamicsGradient elasticityClassical mechanicsHigher order inertiaMechanics of MaterialsModeling and SimulationsymbolsInternational Journal of Solids and Structures
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A gradient elasticity theory for second-grade materials and higher order inertia

2012

Abstract Second-grade elastic materials featured by a free energy depending on the strain and the strain gradient, and a kinetic energy depending on the velocity and the velocity gradient, are addressed. An inertial energy balance principle and a virtual work principle for inertial actions are envisioned to enrich the set of traditional theoretical tools of thermodynamics and continuum mechanics. The state variables include the body momentum and the surface momentum, related to the velocity in a nonstandard way, as well as the concomitant mass-accelerations and inertial forces, which do intervene into the motion equations and into the force boundary conditions. The boundary traction is the …

Angular momentummedia_common.quotation_subjectTraction (engineering)Continuum thermodynamicsInertiaMaterials Science(all)Modelling and SimulationWave dispersionGeneral Materials ScienceVirtual workBoundary value problemmedia_commonMathematicsContinuum mechanicsForce densityMechanical EngineeringApplied MathematicsMathematical analysisEquations of motionCondensed Matter PhysicsDynamicsGradient elasticityClassical mechanicsHigher order inertiaMechanics of MaterialsModeling and SimulationInternational Journal of Solids and Structures
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A computational study of the lowest singlet and triplet states of neutral and dianionic 1,2-substituted icosahedral and octahedralo-carboranes

2006

This work introduces a calibrated B3LYP/6-31G(d) study on the electronic structure of singlet and triplet neutral species of 1,2-substituted icosahedral 1,2-R(2)-1,2-C(2)B(10)H(10) and octahedral 1,2-R(2)-1,2-C(2)B(4)H(4) molecules with R = {H, OH, SH, NH(2), PH(2), CH(3), SiH(3)} and their respective dianions formed by proton removal on each R group. A variety of small adiabatic singlet-triplet gaps DeltaE(ST) are obtained from these systems ranging from 2.93 eV (R = NH(2)) <or= DeltaE(ST) <or= 3.98 eV (R = SiH(3)) for the icosahedral neutrals and 1.56 eV (R = NH(2)) <or= DeltaE(ST) <or= 4.13 eV (R = SiH(3)) for the octahedral neutrals, these gaps being globally smaller for the dianionic s…

AnionsBoron CompoundsModels MolecularChemical PhenomenaProtonChemistry PhysicalChemistryIcosahedral symmetryMolecular ConformationGeneral ChemistryElectronic structureComputational MathematicsCrystallographyOctahedronComputational chemistryMoleculeComputer SimulationSinglet stateAlgorithmsJournal of Computational Chemistry
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Liquid structure of a water-in-salt electrolyte with a remarkably asymmetric anion

2021

Water-in-salt systems, i.e., super-concentrated aqueous electrolytes, such as lithium bis(trifluoromethanesulfonyl)imide (21 mol/kgwater), have been recently discovered to exhibit unexpectedly large electrochemical windows and high lithium transference numbers, thus paving the way to safe and sustainable charge storage devices. The peculiar transport features in these electrolytes are influenced by their intrinsically nanoseparated morphology, stemming from the anion hydrophobic nature and manifesting as nanosegregation between anions and water domains. The underlying mechanism behind this structure-dynamics correlation is, however, still a matter of strong debate. Here, we enhance the apol…

AnionsDYNAMICSLI+MOLECULAR-FORCE FIELDLOCAL-STRUCTUREWaterLithiumMolecular Dynamics Simulationmolecular-force field; particle meshewald; local-structure; ionic liquids; dynamics; viscosity; conductivity dependence; LI+PARTICLE MESH EWALElectrolytesIONIC LIQUIDSDEPENDENCECONDUCTIVITYVISCOSITY
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