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showing 10 items of 7541 documents

A molecular-based identification resource for the arthropods of Finland

2022

Publisher Copyright: © 2021 The Authors. Molecular Ecology Resources published by John Wiley & Sons Ltd. To associate specimens identified by molecular characters to other biological knowledge, we need reference sequences annotated by Linnaean taxonomy. In this study, we (1) report the creation of a comprehensive reference library of DNA barcodes for the arthropods of an entire country (Finland), (2) publish this library, and (3) deliver a new identification tool for insects and spiders, as based on this resource. The reference library contains mtDNA COI barcodes for 11,275 (43%) of 26,437 arthropod species known from Finland, including 10,811 (45%) of 23,956 insect species. To quantify the…

0106 biological sciencesResource (biology)DNA barcodesspecies identificationBiodiversityreference libraryarthropodsBiologyBarcodeProbabilistic taxonomic assignment010603 evolutionary biology01 natural scienceslaw.inventionCoiCOI03 medical and health sciencessymbols.namesakeProtaxlawprobabilistic taxonomic assignmentniveljalkaisetGeneticsAnimalsDNA Barcoding TaxonomicSpecies identificationArthropodsSpecies identificationFinlandEcology Evolution Behavior and SystematicsGene Library030304 developmental biology0303 health sciencesDNA-analyysiPROTAXsystematiikka (biologia)Linnaean taxonomyReference libraryBiodiversityGeographyEvolutionary biologyDna barcodes1181 Ecology evolutionary biologysymbolsidentificationlajinmääritysIdentification (biology)Biotechnology
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Hierarchical log Gaussian Cox process for regeneration in uneven-aged forests

2021

We propose a hierarchical log Gaussian Cox process (LGCP) for point patterns, where a set of points x affects another set of points y but not vice versa. We use the model to investigate the effect of large trees to the locations of seedlings. In the model, every point in x has a parametric influence kernel or signal, which together form an influence field. Conditionally on the parameters, the influence field acts as a spatial covariate in the intensity of the model, and the intensity itself is a non-linear function of the parameters. Points outside the observation window may affect the influence field inside the window. We propose an edge correction to account for this missing data. The par…

0106 biological sciencesStatistics and ProbabilityFOS: Computer and information sciences62F15 (Primary) 62M30 60G55 (Secondary)MCMCGaussianBayesian inferenceMarkovin ketjutStatistics - Applications010603 evolutionary biology01 natural sciencesCox processMethodology (stat.ME)010104 statistics & probabilitysymbols.namesakeregeneraatio (biologia)Applied mathematicsApplications (stat.AP)0101 mathematicsLaplace approximationStatistics - MethodologyGeneral Environmental ScienceParametric statisticsMathematicsspatial random effectsbayesilainen menetelmäMarkov chain Monte CarloFunction (mathematics)15. Life on landMissing dataMonte Carlo -menetelmätcompetition kernelLaplace's methodKernel (statistics)symbolstree regenerationpuustometsänhoitomatemaattiset mallitStatistics Probability and Uncertainty
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The effect of fish life-history structures on the topologies of aquatic food webs

2021

Biological organisms can vastly change their ecological functionality due to changes in body size and diet across their life. Consequently, it has been increasingly recognized that to attain sufficient biological realism, food webs may need to include life-history structures. The objective of the work is to study theoretically whether and how the inclusion of life-history structures affects the food web topology. Topological research was done by applying network theory metrics for three different food web types with two different sizes that were generated by using the niche-model. The dynamical modeling was performed by using an allometric trophic network modeling approach. The different ty…

0106 biological sciencesadjacency matrixComputer sciencegraph theoryNetwork theoryNetwork topology010603 evolutionary biology01 natural sciences03 medical and health sciencessymbols.namesakelife-history structureniche modelStatisticsEcology Evolution Behavior and Systematicskalat030304 developmental biologyApex predatorTrophic level0303 health sciencesBiomass (ecology)food webEcologyverkkoteoriavesiekosysteemitFood webPearson product-moment correlation coefficientekologinen lokeroelinkiertorandom networksymbolsAllometrymatemaattiset mallitravintoverkotFood Webs
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The mechanistic basis of demographic Allee effects: The search for mates

2017

In Focus: Berec, L., Kremer, A.M., Bernhauverova, V., & Drake, J.M. (2017). Density-dependent selection on mate-finding Allee effects. Journal of Animal Ecology, 87, 24-35. https://doi.org/10.1111/1365-2656.12662 In Focus: Shaw, A.K., Kokko, H., & Neubert, M.G. (2017). Details of mate finding drive dynamics of sex structured invasions. Journal of Animal Ecology, 87, 36-46. https://doi.org/10.1111/1365-2656.12658 Lowered population growth ability at low abundances is called the demographic Allee effect. The difficulty of finding mates in a sparse population is the best documented pathway through which a demographic Allee effect might arise. The articles in focus here aim to establish the mec…

0106 biological scienceseducation.field_of_studyPopulationBiology010603 evolutionary biology01 natural sciencesPopulation density010601 ecologysymbols.namesakeDensity dependenceMate choiceAnimal ecologysymbolsPopulation growthAnimal Science and ZoologyeducationEcology Evolution Behavior and SystematicsSelection (genetic algorithm)DemographyAllee effectJournal of Animal Ecology
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Atlantic cod recovery from the Allee effect zone : contrasting ecological and evolutionary rescue

2020

The ability of a population to recover from disturbances is fundamental for its persistence. Impaired population recovery might be associated with a demographic Allee effect. Immigration from adjacent populations could accelerate the recovery not only by promoting population growth beyond the Allee effect threshold but also by bringing in advantageous genotypes. We explore the nature and role of ecological and evolutionary rescue in an Atlantic cod (Gadus morhua Gadidae) population fished below its Allee effect threshold. We utilize an eco-evolutionary model and simulate scenarios, where the target population evolves in response to selective fishing and sample immigrants from (a) a source p…

0106 biological sciencesharvest-induced evolutionadaptationManagement Monitoring Policy and LawAquatic SciencetehokalastusOceanography010603 evolutionary biology01 natural sciencesturskaDepensationsymbols.namesakepopulaatiot14. Life underwaterResilience (network)resilienceEcology Evolution Behavior and SystematicsAllee effectpopulation rebuildsopeutuminenresilienssipopulation collapsebiologyEcology010604 marine biology & hydrobiologykalakannatharvestingbiology.organism_classificationpopulaatioekologiaGeographydepensationsymbolskannanvaihtelutAdaptationAtlantic codEvolutionary rescue
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Temporary Allee effects among non‐stationary recruitment dynamics in depleted gadid and flatfish populations

2021

Many considerably declined fish populations have not fully recovered despite reductions in fishing pressure. One of the possible causes of impaired recovery is the (demographic) Allee effect. To investigate whether low-abundance recruitment dynamics can switch between compensation and depensation, the latter implying the presence of the Allee effect, we analysed the stock–recruitment time series of 17 depleted cod-type and flatfish populations using a Bayesian change point model. The recruitment dynamics were represented with the sigmoidal Beverton–Holt and the Saila–Lorda stock–recruitment models, allowing the parameters of the models to shift at a priori unknown change points. Our synthes…

0106 biological sciencesliikakalastuschange point modelpalautuminenManagement Monitoring Policy and LawAquatic ScienceOceanography010603 evolutionary biology01 natural scienceskampelakalatDepensationcompensationsymbols.namesakeFlatfishturskakalat14. Life underwaterEcology Evolution Behavior and SystematicsAllee effectregime shiftsbiologyEcology010604 marine biology & hydrobiologykalakannatChange point modelbiology.organism_classificationpopulaatiodynamiikkastock–recruitmentkalatalousdepensationsymbolsFish and Fisheries
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Allee effect in a manipulative parasite within poikilothermic host under temperature change

2022

AbstractTemperature and intraspecific competition are important factors influencing the growth of all organisms, including parasites. The temperature increase is suggested to stimulate the development of parasites within poikilothermic hosts. However, at high parasite densities, this effect could be diminished, due to stronger intraspecific competition. Our study, for the first time, addressed the joint effects of warming and parasite abundances on parasite growth in poikilothermic hosts. The growth of the common fish parasite larvae (trematode Diplostomum pseudospathaceum) within the rainbow trout at different infection intensities and temperatures (15°C and 18°C) was experimentally invest…

0106 biological sciencesthermal responsecrowding effectZoologyDiplostomum pseudospathaceumTrematode InfectionsBiology010603 evolutionary biology01 natural sciencesHost-Parasite InteractionsFish Diseases03 medical and health sciencessymbols.namesakeeye flukekirjolohiloisetmetacercariaeAnimalsParasite hostingParasitessize variationEcosystem030304 developmental biologyAllee effect0303 health sciencesHost (biology)imumadotTemperatureparasite growthpopulaatiodynamiikkaInfectious DiseasesPoikilotherminfection intensitiesOncorhynchus mykisssymbolslämpötilaAnimal Science and ZoologyParasitologyTrematodaympäristönmuutoksetParasitology
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Effect of Metal Complexation on the Conductance of Single-Molecular Wires Measured at Room Temperature

2014

The present work aims to give insight into the effect that metal coordination has on the room-temperature conductance of molecular wires. For that purpose, we have designed a family of rigid, highly conductive ligands functionalized with different terminations (acetylthiols, pyridines, and ethynyl groups), in which the conformational changes induced by metal coordination are negligible. The single-molecule conductance features of this series of molecular wires and their corresponding Cu(I) complexes have been measured in break-junction setups at room temperature. Experimental and theoretical data show that no matter the anchoring group, in all cases metal coordination leads to a shift towar…

02 engineering and technology010402 general chemistry01 natural sciencesBiochemistryCatalysissymbols.namesakeMolecular wireColloid and Surface ChemistryComputational chemistryMolecular conductanceMolecular orbitalLigandChemistryFermi levelSingle-MoleculeConductanceFermi energyGeneral Chemistry021001 nanoscience & nanotechnology0104 chemical sciencesChemical physicsConductancesymbolsDensity functional theoryConductance; Single-Molecule; Break JunctionsBreak Junctions0210 nano-technologyJournal of the American Chemical Society
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Massively Parallel Huffman Decoding on GPUs

2018

Data compression is a fundamental building block in a wide range of applications. Besides its intended purpose to save valuable storage on hard disks, compression can be utilized to increase the effective bandwidth to attached storage as realized by state-of-the-art file systems. In the foreseeing future, on-the-fly compression and decompression will gain utmost importance for the processing of data-intensive applications such as streamed Deep Learning tasks or Next Generation Sequencing pipelines, which establishes the need for fast parallel implementations. Huffman coding is an integral part of a number of compression methods. However, efficient parallel implementation of Huffman decompre…

020203 distributed computingComputer sciencebusiness.industryDeep learning020206 networking & telecommunicationsData_CODINGANDINFORMATIONTHEORY02 engineering and technologyParallel computingHuffman codingsymbols.namesakeCUDATitan (supercomputer)0202 electrical engineering electronic engineering information engineeringsymbolsArtificial intelligencebusinessMassively parallelData compressionProceedings of the 47th International Conference on Parallel Processing
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A Sequential Game Approach for Computation-Offloading in an UAV Network

2017

International audience; Small drones are currently emerging as versatile nascent technology that can be used in exploration and surveillance missions. However, most of the underlying applications require very often complex and time-consuming calculations. Although, the limited resources available onboard the small drones, their mobility, the computation delays and energy consumption make the operation of these applications very challenging. Nevertheless, computation-offloading solutions provide feasible resolves to mitigate the issues facing these constrained devices. In this context, we address in this paper the problem of offloading highly intensive computation tasks, performed by a fleet…

020203 distributed computingSequential gameComputer scienceDistributed computingBase stations020206 networking & telecommunicationsContext (language use)Computational modelingServers02 engineering and technologyEnergy consumptionBase stationsymbols.namesake[SPI]Engineering Sciences [physics]Nash equilibriumServer0202 electrical engineering electronic engineering information engineeringsymbolsOverhead (computing)Computation offloadingDelaysGamesDrones
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