Search results for "TRIX"

A non-linear optimization procedure to estimate distances and instantaneous substitution rate matrices under the GTR model.

2006

Abstract Motivation: The general-time-reversible (GTR) model is one of the most popular models of nucleotide substitution because it constitutes a good trade-off between mathematical tractability and biological reality. However, when it is applied for inferring evolutionary distances and/or instantaneous rate matrices, the GTR model seems more prone to inapplicability than more restrictive time-reversible models. Although it has been previously noted that the causes for intractability are caused by the impossibility of computing the logarithm of a matrix characterised by negative eigenvalues, the issue has not been investigated further. Results: Here, we formally characterize the mathematic…

A dynamical approach to compatible and incompatible questions

2019

We propose a natural strategy to deal with compatible and incompatible binary questions, and with their time evolution. The strategy is based on the simplest, non-commutative, Hilbert space $\mathcal{H}=\mathbb{C}^2$, and on the (commuting or not) operators on it. As in ordinary Quantum Mechanics, the dynamics is driven by a suitable operator, the Hamiltonian of the system. We discuss a rather general situation, and analyse the resulting dynamics if the Hamiltonian is a simple Hermitian matrix.

On the empirical spectral distribution for certain models related to sample covariance matrices with different correlations

2021

Given [Formula: see text], we study two classes of large random matrices of the form [Formula: see text] where for every [Formula: see text], [Formula: see text] are iid copies of a random variable [Formula: see text], [Formula: see text], [Formula: see text] are two (not necessarily independent) sets of independent random vectors having different covariance matrices and generating well concentrated bilinear forms. We consider two main asymptotic regimes as [Formula: see text]: a standard one, where [Formula: see text], and a slightly modified one, where [Formula: see text] and [Formula: see text] while [Formula: see text] for some [Formula: see text]. Assuming that vectors [Formula: see t…

Anderson localization problem: An exact solution for 2-D anisotropic systems

2007

Our previous results [J.Phys.: Condens. Matter 14 (2002) 13777] dealing with the analytical solution of the two-dimensional (2-D) Anderson localization problem due to disorder is generalized for anisotropic systems (two different hopping matrix elements in transverse directions). We discuss the mathematical nature of the metal-insulator phase transition which occurs in the 2-D case, in contrast to the 1-D case, where such a phase transition does not occur. In anisotropic systems two localization lengths arise instead of one length only.

Microscopic approach to a class of 1D quantum critical models

2015

Starting from the finite volume form factors of local operators, we show how and under which hypothesis the $c=1$ free boson conformal field theory in two-dimensions emerges as an effective theory governing the large-distance regime of multi-point correlation functions in a large class of one dimensional massless quantum Hamiltonians. In our approach, in the large-distance critical regime, the local operators of the initial model are represented by well suited vertex operators associated to the free boson model. This provides an effective field theoretic description of the large distance behaviour of correlation functions in 1D quantum critical models. We develop this description starting f…

Self-consistent Euclidean-random-matrix theory

2019

Open spin chains with generic integrable boundaries: Baxter equation and Bethe ansatz completeness from separation of variables

2014

28 pages; International audience; We solve the longstanding problem to define a functional characterization of the spectrum of the transfer matrix associated to the most general spin-1/2 representations of the 6-vertex reflection algebra for general inhomogeneous chains. The corresponding homogeneous limit reproduces the spectrum of the Hamiltonian of the spin-1/2 open XXZ and XXX quantum chains with the most general integrable boundaries. The spectrum is characterized by a second order finite difference functional equation of Baxter type with an inhomogeneous term which vanishes only for some special but yet interesting non-diagonal boundary conditions. This functional equation is shown to…

Duality of reduced density matrices and their eigenvalues

2014

For states of quantum systems of N particles with harmonic interactions we prove that each reduced density matrix ρ obeys a duality condition. This condition implies duality relations for the eigenvalues λk of ρ and relates a harmonic model with length scales ${{\ell }_{1}},{{\ell }_{2}},\ldots ,{{\ell }_{N}}$ with another one with inverse lengths $1/{{\ell }_{1}},1/{{\ell }_{2}},\ldots ,1/{{\ell }_{N}}$. Entanglement entropies and correlation functions inherit duality from ρ. Self-duality can only occur for noninteracting particles in an isotropic harmonic trap.

Affine equivariant multivariate rank methods

2003

The classical multivariate statistical methods (MANOVA, principal component analysis, multivariate multiple regression, canonical correlation, factor analysis, etc.) assume that the data come from a multivariate normal distribution and the derivations are based on the sample covariance matrix. The conventional sample covariance matrix and consequently the standard multivariate techniques based on it are, however, highly sensitive to outlying observations. In the paper a new, more robust and highly efficient, approach based on an affine equivariant rank covariance matrix is proposed and outlined. Affine equivariant multivariate rank concept is based on the multivariate Oja (Statist. Probab. …

Non-self-adjoint Hamiltonians with complex eigenvalues

2016

Motivated by what one observes dealing with PT-symmetric quantum mechanics, we discuss what happens if a physical system is driven by a diagonalizable Hamiltonian with not all real eigenvalues. In particular, we consider the functional structure related to systems living in finite-dimensional Hilbert spaces, and we show that certain intertwining relations can be deduced also in this case if we introduce suitable antilinear operators. We also analyze a simple model, computing the transition probabilities in the broken and in the unbroken regime.