Search results for "Transcript"
showing 10 items of 3476 documents
cis-regulatory variation modulates susceptibility to enteric infection in the Drosophila genetic reference panel
2020
Abstract Background Resistance to enteric pathogens is a complex trait at the crossroads of multiple biological processes. We have previously shown in the Drosophila Genetic Reference Panel (DGRP) that resistance to infection is highly heritable, but our understanding of how the effects of genetic variants affect different molecular mechanisms to determine gut immunocompetence is still limited. Results To address this, we perform a systems genetics analysis of the gut transcriptomes from 38 DGRP lines that were orally infected with Pseudomonas entomophila. We identify a large number of condition-specific, expression quantitative trait loci (local-eQTLs) with infection-specific ones located …
3 ′-5 ′ crosstalk contributes to transcriptional bursting
2019
Abstract Background Transcription in mammalian cells is a complex stochastic process involving shuttling of polymerase between genes and phase-separated liquid condensates. It occurs in bursts, which results in vastly different numbers of an mRNA species in isogenic cell populations. Several factors contributing to transcriptional bursting have been identified, usually classified as intrinsic, in other words local to single genes, or extrinsic, relating to the macroscopic state of the cell. However, some possible contributors have not been explored yet. Here, we focus on processes at the 3 ′ and 5 ′ ends of a gene that enable reinitiation of transcription upon termination. Results Using Bay…
Cytoplasmic 5′-3′ exonuclease Xrn1p is also a genome-wide transcription factor in yeast
2014
The 5′ to 3′ exoribonuclease Xrn1 is a large protein involved in cytoplasmatic mRNA degradation as a critical component of the major decaysome. Its deletion in the yeast Saccharomyces cerevisiae is not lethal, but it has multiple physiological effects. In a previous study, our group showed that deletion of all tested components of the yeast major decaysome, including XRN1, results in a decrease in the synthetic rate and an increase in half-life of most mRNAs in a compensatory manner. Furthermore, the same study showed that the all tested decaysome components are also nuclear proteins that bind to the 5′ region of a number of genes. In the present work, we show that disruption of Xrn1 activi…
Critical aspects of the physiological interactions between lead and magnesium
2021
Despite technological progress, exposure to lead is an ongoing problem. There are many mechanisms governing the toxic effects of lead on the human body. One such mechanism involves the interaction of this xenobiotic with bivalent metal ions, including magnesium. Literature data suggest that the competition between these elements for binding sites at the molecular and cellular levels, as well as at the systemic level, may represent an important aspect of lead toxicity in the human body. This is especially clear in the context of oxidative stress, immune response, and gene expression modifications. This review aims to summarize current knowledge regarding these issues.
RNA-Binding Proteins as Epigenetic Regulators of Brain Functions and Their Involvement in Neurodegeneration.
2022
A central aspect of nervous system development and function is the post-transcriptional regulation of mRNA fate, which implies time- and site-dependent translation, in response to cues originating from cell-to-cell crosstalk. Such events are fundamental for the establishment of brain cell asymmetry, as well as of long-lasting modifications of synapses (long-term potentiation: LTP), responsible for learning, memory, and higher cognitive functions. Post-transcriptional regulation is in turn dependent on RNA-binding proteins that, by recognizing and binding brief RNA sequences, base modifications, or secondary/tertiary structures, are able to control maturation, localization, stability, and tr…
Comparative genomics and transcriptomics in Saccharomyces
2015
Las levaduras del género Saccharomyces (principalmente Saccharomyces cerevisiae) son las responsables de la fermentación alcohólica (Pretorius, 2000). Aunque S. cerevisiae es la especie más frecuente en fermentaciones vínicas, y modelo de estudio (Pretorius, 2000; Serra et al., 2005; Barrio et al., 2006), también pueden estar presentes durante el proceso especies como S. uvarum (Naumov et al., 2002; Rementería et al., 2003; Demuyter et al., 2004), Saccharomyces paradoxus, aislada de viñedos croatas (Redžepovic et al., 2002) o también híbridos naturales entre especies del género Saccharomyces como S. cerevisiae x S. kudriavzevii (González et al., 2006) y S. cerevisiae x S. uvarum (Le Jeune e…
Characterization and improvement of non-conventional Saccharomyces yeasts to solve new challenges in the wine industry: Application of omics technolo…
2021
Las levaduras Saccharomyces participan en procesos fermentativos de valor en la industria alimentaria, como la elaboración de vino. La industria del vino utiliza levaduras seleccionadas para realizar la fermentación del vino de forma controlada y para producir un vino homogéneo. En la actualidad, S. cerevisiae es la especie del género Saccharomyces más utilizada en la industria vitivinícola para llevar a cabo el proceso fermentativo, por ser muy resistente al etanol, compuesto tóxico que se produce durante las fermentaciones. Hoy en día, como consecuencia del cambio climático, los vinos finales contienen niveles de alcohol y pH más altos y una acidez total menor a la esperada, característic…
Stem cell populations in the heart and the role of Isl1 positive cells
2013
Cardiac progenitor cells are multipotent stem cells isolated from both embryonic and adult hearts in several species and are able to differentiate at least into smooth muscle cells, endothelial cells and cardiomyocytes. The embryonic origin of these cells has not yet been demonstrated, but it has been suggested that these cells may derive from the first and secondary heart fields and from the neural crest. In the last decade, two diffe-rent populations of cardiac progenitor or stem cells have been identified and isolated, i.e., the Islet1 positive (Isl1+) and c-Kit positive (c-Kit+)/Stem Cell Antigen-1 positive (Sca-1+) cells. Until 2012, these two populations have been considered two separ…
Propuesta de transcripción de datos afásicos
2004
Propuesta de adaptación del sistema de transcricpción del Análisis Conversacional a datos clínicos y bilingües
Changes in gene expression during adaptation of Listeria monocytogenes to the soil environment
2011
project SEST 009; International audience; Listeria monocytogenes is a ubiquitous opportunistic pathogen responsible for listeriosis. In order to study the processes underlying its ability to adapt to the soil environment, whole-genome arrays were used to analyse transcriptome modifications 15 minutes, 30 minutes and 18 h after inoculation of L. monocytogenes EGD-e in soil extracts. Growth was observed within the first day of incubation and large numbers were still detected in soil extract and soil microcosms one year after the start of the experiment. Major transcriptional reprofiling was observed. Nutrient acquisition mechanisms (phosphoenolpyruvate-dependent phosphotransferase systems and…