Search results for "Type"
showing 10 items of 10618 documents
Fossorial but widespread: the phylogeography of the common spadefoot toad (Pelobates fuscus), and the role of the Po Valley as a major source of gene…
2007
International audience; Pelobates fuscus is a fossorial amphibian that inhabits much of the European plain areas. To unveil traces of expansion and contraction events of the species' range, we sequenced 702 bp of the mitochondrial cytochrome b gene. To infer the population history we applied phylogeographical methods, such as nested clade phylogeographical analysis (NCPA), and used summary statistics to analyse population structure under a neutral model of evolution. Populations were assigned to different drainage systems and we tested hypotheses of explicit refugial models using information from analysis of molecular variance, nucleotide diversity, effective population size estimation, NCP…
Role of host genetic diversity for susceptibility-to-infection in the evolution of virulence of a plant virus
2019
Predicting viral emergence is difficult due to the stochastic nature of the underlying processes and the many factors that govern pathogen evolution. Environmental factors affecting the host, the pathogen and the interaction between both are key in emergence. In particular, infectious disease dynamics are affected by spatiotemporal heterogeneity in their environments. A broad knowledge of these factors will allow better estimating where and when viral emergence is more likely to occur. Here, we investigate how the population structure for susceptibility-to-infection genes of the plant Arabidopsis thaliana shapes the evolution of Turnip mosaic virus (TuMV). For doing so we have evolved TuMV …
OMICfpp: a fuzzy approach for paired RNA-Seq counts
2019
© The Author(s) 2019.
Novel subpopulations in date palm (Phoenix dactylifera) identified by population-wide organellar genome sequencing
2019
Background The date palm is one of the oldest cultivated fruit trees. The tree can withstand high temperatures and low water and the fruit can be stored dry offering nutrition across the year. The first region of cultivation is believed to be near modern day Iraq, however, where and if the date palm was domesticated is still a topic of debate. Recent studies of chloroplast and genomic DNA revealed two major subpopulations of cultivars centered in both the Eastern range of date palm cultivation including Arabian Peninsula, Iraq and parts of South Asia, and the Western range, including North Africa. Results To better understand the origins of date palm cultivation we sequenced and analyzed ov…
A multi-site study to classify semi-natural grassland types
2009
International audience; Calibration and validation of simulation models describing herbage growth or feed quality of seminatural grasslands is a complex task for agronomists without investing effort into botanical surveys. To facilitate such modelling efforts, a limited number of grassland types were identified using a functional classification of species. These grassland types were characterized by three descriptors required to model herbage growth or feed quality: the abundance-weighted mean leaf dry matter content across grass species, the relative abundance of grasses, and an estimate of species richness. We conducted a multi-site analysis over 749 grasslands from eight temperate region…
Flexible timing of reproductive effort as an alternative mating tactic in black grouse (Lyrurus tetrix) males
2016
Alternative reproductive tactics often take the form of dichotomous behavioural phenotypes. Focusing attention on such obvious dichotomy means that flexible patterns of behaviour within tactics is largely ignored. Using a long-term dataset of black grouse (Lyrurus tetrix) lek behaviours, we tested whether there were fine-scale differences in reproductive effort (lek attendance, fighting rates) and whether these were related to age and phenotype. Yearling males increased their lek attendance and fighting rate to a peak when adult male effort was declining. Adults and yearlings allocated reproductive effort according to their body mass but this was unrelated to differences in timing of effort…
Personalities influence spatial responses to environmental fluctuations in wild fish
2017
Abstract Although growing evidence supports the idea that animal personality can explain plasticity in response to changes in the social environment, it remains to be tested whether it can explain spatial responses of individuals in the face of natural environmental fluctuations. This is a major challenge in ecology and evolution as spatial dynamics link individual‐ and population‐level processes.In this study, we investigated the potential of individual personalities to predict differences in fish behaviour in the wild. Specifically, our goal was to answer if individual differences in plasticity of space use to sea surface temperature could be explained by differences in personality along …
Crocus sativus L. Ecotypes from Mediterranean Countries: Phenological, Morpho-Productive, Qualitative and Genetic Traits
2021
The characterization of C. sativus ecotypes is of great interest for preserving them from a possible genetic erosion due to the decrease of European cultivation surface. In this study, we evaluated four ecotypes from Italy (Sardinia and Abruzzo), Spain (Castilla-La Mancha), and Greece (Kozani) in order to detect the existence of variability and promote the biodiversity of this crop. Thirty-one traits related to saffron flowering, flower morphology, production of spice and daughter corms, vegetative development (leaf and corm traits), and spice quality, were evaluated. In addition, a genetic analysis through three PCR-based approaches, SSRs, RAPD, and SRAP was assessed. Results highlighted a…
Two new species of the Lace-bug genus Agachila from the Democratic Republic of Congo (Hemiptera: Heteroptera: Tingidae)
2016
Abstract Two new species of the genus Agachila Drake and Gomez-Menor, 1954, Agachila raunoi sp. nov. and A. linnavuorii sp. nov., are described from the Virungas National Park in the Democratic Republic of the Congo. Images of female holotype specimens of both described species are provided.
Chemical–Physical, sensory analyses and consumers’ quality perception of local vs. imported loquat fruits: a sustainable development perspective
2020
Local products and their distribution through short supply chains play a key role in the sustainable development of many rural areas, as affirmed by the 2030 Food and Agriculture Organization of the United Nations (FAO) Agenda. Moreover, in the last years, more and more consumers have shown a specific interest towards local production, pushed by the need for healthy eating, protecting the environment, and boosting the local economy. However, the cultivation of local fruit varieties or ecotypes has considerably decreased in the last decades because of their low production potential. As a result, many farmers have been forced to replace local orchards with few worldwide grown cultivars, causi…