Search results for "ULTRAVIOLET"

showing 10 items of 853 documents

Cyclic triureas—synthesis, crystal structures and properties

2008

The synthesis of 24-membered macrocycles is described, in which rigid xanthene units (X) and/or diphenyl ether units (D) as flexible analogues are linked via urea groups. All four possible combinations (XXX, XXD, XDD, DDD) have been obtained with yields of 40-72% for the cyclisation step. In two cases, the respective cyclic hexamers (XXDXXD, XXXXXX) were also isolated. Two compounds have been characterised by a single crystal X-ray analysis of the free triurea (XXD, XDD) and one example (DDD) by its complex with tetrabutylammonium chloride. It shows the chloride anion in the centre of the macrocycle, held by six NH...Cl- hydrogen bonds. The interaction with various other anions has been stu…

Models MolecularAcetonitrilesMacrocyclic CompoundsInorganic chemistryCrystallography X-RayBiochemistryChloridechemistry.chemical_compoundBromidemedicineUreaPhysical and Theoretical ChemistryAcetonitrileXantheneMolecular StructureHydrogen bondOrganic ChemistrySolvationHydrogen BondingQuaternary Ammonium CompoundsSolventCrystallographyXantheneschemistryCyclizationIntramolecular forceSpectrophotometry UltravioletChloroformCrystallizationmedicine.drugOrganic & Biomolecular Chemistry
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Modelling Photoionisation in Isocytosine: Potential Formation of Longer‐Lived Excited State Cations in its Keto Form

2021

Abstract Studying the effects of UV and VUV radiation on non‐canonical DNA/RNA nucleobases allows us to compare how they release excess energy following absorption with respect to their canonical counterparts. This has attracted much research attention in recent years because of its likely influence on the origin of our genetic lexicon in prebiotic times. Here we present a CASSCF and XMS‐CASPT2 theoretical study of the photoionisation of non‐canonical pyrimidine nucleobase isocytosine in both its keto and enol tautomeric forms. We analyse their lowest energy cationic excited states including 2π+ , 2nO+ and 2nN+ and compare these to the corresponding electronic states in cytosine. Investigat…

Models MolecularCASPT2Ultraviolet RaysADNPhysics Atomic Molecular & ChemicalRELAXATION DYNAMICSCASSCFArticleCytosineMOLECULAR WAVE-FUNCTIONSCationsIMPLEMENTATION0307 Theoretical and Computational ChemistryPhysical and Theoretical Chemistry0306 Physical Chemistry (incl. Structural)Radiació ionitzantScience & TechnologyChemical PhysicsMolecular StructureChemistry PhysicalConical IntersectionsPhysicsSPECTROSCOPIC FINGERPRINTSDNAArticlesKetonesPhotochemical ProcessesURACILAtomic and Molecular Physics and OpticsChemistryPhotostability2ND-ORDER PERTURBATION-THEORYPhotoionisationPhysical SciencesANO BASIS-SETSSIMULATION0202 Atomic Molecular Nuclear Particle and Plasma PhysicsCASSCF/CASPT2RNAELECTRON CORRELATIONDNA/RNAChemPhysChem
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Modulation of DNA binding by reversible metal-controlled molecular reorganizations of scorpiand-like ligands.

2012

DNA interaction with scorpiand azamacrocycles has been achieved through modulation of their binding affinities. Studies performed with different experimental techniques provided evidence that pH or metal-driven molecular reorganizations of these ligands regulate their ability to interact with calf thymus DNA (ctDNA) through an intercalative mode. Interestingly enough, metal-driven molecular reorganizations serve to increase or decrease the biological activities of these compounds significantly.

Models MolecularCircular dichroismMacrocyclic CompoundsStereochemistryCell SurvivalDna interactionAntineoplastic AgentsNucleic Acid DenaturationBiochemistryCatalysisMetalchemistry.chemical_compoundColloid and Surface ChemistryCell Line TumorNeoplasmsAnimalsHumansBinding affinitiesCircular DichroismGeneral ChemistryDNAIntercalating AgentsDNA metabolismchemistryCell cultureMetalsvisual_artvisual_art.visual_art_mediumCattleSpectrophotometry UltravioletProtonsDNAJournal of the American Chemical Society
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Interaction of Doxorubicin with Polynucleotides. A Spectroscopic Study

2014

The interaction of doxorubicin (DX) with model polynucleotides poly(dG-dC)·poly(dG-dC) (polyGC), poly(dA-dT)·poly(dA-dT) (polyAT), and calf thymus DNA has been studied by several spectroscopic techniques in phosphate buffer aqueous solutions. UV-vis, circular dichroism, and fluorescence spectroscopic data confirm that intercalation is the prevailing mode of interaction, and also reveal that the interaction with AT-rich regions leads to the transfer of excitation energy to DX not previously documented in the literature. Moreover, the DX affinity for AT sites has been found to be on the same order of magnitude as that reported for GC sites.

Models MolecularCircular dichroismStereochemistryPolynucleotidesIntercalation (chemistry)polinucleotidi; spettroscopia; doxorubicinaBiochemistrychemistry.chemical_compoundSpectrophotometrymedicineAnimalsMoleculeAqueous solutionMolecular Structuremedicine.diagnostic_testChemistryCircular DichroismDNAFluorescenceCrystallographySpectrometry FluorescenceDoxorubicinPolynucleotideCattleSpectrophotometry UltravioletDNABiochemistry
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Toward the understanding of DNA fluorescence: The singlet excimer of cytosine

2006

By using the multiconfigurational second-order perturbation method CASPT2, including corrections for the basis set superposition error, the lowest-singlet excited state of the face-to-face π-stacked cytosine homodimer is revealed to be bound by about half an eV, being the source of an emissive feature consistent with the observed redshifted fluorescence. Gloria.Olaso@uv.es Daniel.Roca@uv.es Luis.Serrano@uv.es Manuela.Merchan@uv.es

Models MolecularDNA ; Molecular biophysics ; Fluorescence ; Excimers ; Perturbation theory ; Excited states ; Red shift ; BiochemistryTime FactorsLightUltraviolet RaysOligonucleotidesGeneral Physics and AstronomyPerturbation theoryExcimerBiochemistryFluorescenceCytosinechemistry.chemical_compoundSinglet statePhysical and Theoretical ChemistryPerturbation theory:FÍSICA::Química física [UNESCO]ExcimersChemistry PhysicalExcited statesDNAMolecular biophysicsFluorescenceRed shiftUNESCO::FÍSICA::Química físicaMicroscopy FluorescenceModels ChemicalchemistryExcited stateAtomic physicsLuminescenceDimerizationCytosineDNAThe Journal of Chemical Physics
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Photoinduced Formation Mechanism of the Thymine−Thymine (6−4) Adduct

2013

The photoinduced mechanism leading to the formation of the thymine-thymine (6-4) photolesion has been studied by using the CASPT2//CASSCF approach over a dinucleotide model in vacuo. Following light absorption, localization of the excitation on a single thymine leads to fast singlet-triplet crossing that populates the triplet (3)(nπ*) state of thymine. This state, displaying an elongated C(4)═O bond, triggers (6-4) dimer formation by reaction with the C(5)═C(6) double bond of the adjacent thymine, followed by a second intersystem crossing, which acts as a gate between the excited state of the reactant and the ground state of the photoproduct. The requirement of localized excitation on just …

Models MolecularDouble bondUltraviolet RaysphotolesionDimerÀcids nucleicsQuantum yieldthymine−thymine dimer010402 general chemistryPhotochemistry01 natural sciencesAdductDNA Adductschemistry.chemical_compound0103 physical sciencesMaterials ChemistryPhysical and Theoretical Chemistrychemistry.chemical_classificationphotochemistry010304 chemical physicsChemistryDNA3. Good health0104 chemical sciencesSurfaces Coatings and FilmsThymineIntersystem crossingPyrimidine DimersExcited stateCASPT2//CASSCFQuantum TheoryGround stateFisicoquímica
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Face-to-face held Pacman type porphyrin-fullerene dyads: design, synthesis, charge transfer interactions and photophysical studies

2008

Pacman-type face-to-face zinc-porphyrin-fullerene dyads have been newly synthesized and studied. Owing to the close proximity of the donor and acceptor entities, strong pi-pi intramolecular interactions between the porphyrin and fullerene entities resulted in modulating the spectral and electrochemical properties of the dyads. New absorption and emission bands that correspond to the charge-transfer interactions were observed in the near-IR region. Time-resolved transient absorption studies revealed efficient photoinduced electron transfer from the singlet excited porphyrin to the fullerene entity. The rate constants for photoinduced electron transfer are analyzed in terms of the Marcus theo…

Models MolecularFullereneMagnetic Resonance SpectroscopyPorphyrinsTime FactorsPhotochemistryporphyrinoids010402 general chemistryPhotochemistry01 natural sciencesCatalysisPhotoinduced electron transferElectron Transportchemistry.chemical_compoundElectron transfer[ CHIM.ORGA ] Chemical Sciences/Organic chemistryOrganometallic CompoundsComputingMilieux_MISCELLANEOUSphotosynthesisMolecular Structure010405 organic chemistryChemistry[CHIM.ORGA]Chemical Sciences/Organic chemistryOrganic Chemistrycharge transferfullerenesGeneral Chemistryelectron transferAcceptorPorphyrin0104 chemical sciencesMarcus theoryZincSpectrometry FluorescenceModels ChemicalExcited stateIntramolecular forceSpectrophotometry UltravioletDimerization
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Autonomous artificial nanomotor powered by sunlight

2006

Light excitation powers the reversible shuttling movement of the ring component of a rotaxane between two stations located at a 1.3-nm distance on its dumbbell-shaped component. The photoinduced shuttling movement, which occurs in solution, is based on a “four-stroke” synchronized sequence of electronic and nuclear processes. At room temperature the deactivation time of the high-energy charge-transfer state obtained by light excitation is ≈10 μs, and the time period required for the ring-displacement process is on the order of 100 μs. The rotaxane behaves as an autonomous linear motor and operates with a quantum efficiency up to ≈12%. The investigated system is a unique example of an artif…

Models MolecularLuminescenceMagnetic Resonance SpectroscopyTime FactorsRotaxaneLightRotaxanesUltraviolet RaysPhotochemistryMovementMolecular ConformationElectronsPhotochemistryAbsorptionQUIMICA ORGANICAPhenothiazinesRotaxaneElectrochemistryNanotechnologyNanomotorAbsorption (electromagnetic radiation)Molecular machinePhotolysisMultidisciplinaryChemistrybusiness.industryMolecular Motor ProteinsPhotodissociationTemperatureLinear motorKineticsNanoscienceFluid solutionSpectrophotometryPhysical SciencesSunlightOptoelectronicsQuantum efficiencyElectronicsLuminescencebusinessSupramolecular chemistry
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Fluorescent substituted amidines of benzanthrone: synthesis, spectroscopy and quantum chemical calculations.

2012

Abstract Several new substituted amidine derivatives of benzanthrone were synthesized by a condensation reaction from 3-aminobenzo[de]anthracen-7-one and appropriate aromatic and aliphatic amides. The obtained derivatives have a bright yellow or orange fluorescence in organic solvents and in solid state. The novel benzanthrone derivatives were characterized by TLC analysis, 1H NMR, IR, MS, UV/vis, and fluorescence spectroscopy. The solvent effect on photophysical behaviors of these dyes was investigated, and the results showed that the Stoke’s shift increased, whereas quantum yield decreased with the growth of the solvent polarity. The structure of some dyes was confirmed by the X-ray singl…

Models MolecularMagnetic Resonance SpectroscopyChemistryAmidinesQuantum yieldPhotochemistryCrystallography X-RayAtomic and Molecular Physics and OpticsFluorescence spectroscopyBenzanthroneAnalytical ChemistryAmidinechemistry.chemical_compoundSpectrometry FluorescenceSpectroscopy Fourier Transform InfraredProton NMRBenz(a)AnthracenesZINDOSpectrophotometry UltravioletSolvent effectsSpectroscopyInstrumentationSpectroscopyFluorescent DyesSpectrochimica acta. Part A, Molecular and biomolecular spectroscopy
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Synyhesis, structure, spectroscopy and redox chemistry of square-planar nickel(II) complexes with tetradentate o-phenylenedioxamidates and related li…

2005

[EN] A series of four-coordinate square-planar nickel(II) complexes of o-phenylenebis(N¿-methyloxamidate) (L1) and related o-phenylene(N¿-methyloxamidate)oxamate (L2) and o-phenylenebis(oxamate) (L3) tetradentate ligands have been synthesized and characterized structurally, spectroscopically and electrochemically. The parent nickel(II)¿L1 complex presents an intense MLCT band in the UV region (¿max = 357 nm) and a distinctive 1 s ¿ 4p CT satellite in the Ni K-edge XANES spectrum (E = 8339.2 eV). These features together with the short Ni¿N(amidate) bond lengths (1.85¿1.93 Å) as revealed by the analysis of the Ni K-edge EXAFS spectrum and confirmed by single-crystal X-ray diffraction are typi…

Models MolecularMagnetic Resonance SpectroscopySpectrophotometry Infraredchemistry.chemical_elementPhenylenediaminesCrystallography X-RayLigandsPhotochemistrySensitivity and SpecificityRedoxlaw.inventionInorganic Chemistrychemistry.chemical_compoundNickellawElectrochemistryOrganometallic CompoundsMoleculeAcetonitrileElectron paramagnetic resonanceOxalatesMolecular StructureExtended X-ray absorption fine structureLigandElectron Spin Resonance SpectroscopySpectrometry X-Ray EmissionStereoisomerismBond lengthNickelCrystallographychemistryFISICA APLICADASpectrophotometry UltravioletOxidation-Reduction
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