Search results for "Visualization"
showing 10 items of 449 documents
Clustering Bacteria Species Using Neural Gas: Preliminary Study
2009
In this work a method for clustering and visualization of bacteria taxonomy is presented. A modified version of the Batch Median Neural Gas (BNG) algorithm is proposed. The BNG algorithm is able to manage non vectorial data given as a dissimilarity matrix. We tested the modified BNG on the dissimilarity matrix obtained from sequences alignment and computing distances using bacteria genotype information regarding the16S rRNA housekeeping gene, which represents a stable part of bacteria genome. The dataset used for the experiments is obtained from the Ribosomal Database Project II, and it is made of 5159 sequences of 16S rRNA genes. Preliminary results of the experiments show a promising abil…
Exploratory nuclear microprobe data visualisation using 3- and 4-dimensional biological volume rendering tools
2007
Abstract The emergence of Confocal Microscopy (CM) and Atomic Force Microscopy (AFM) as everyday tools in cellular level biology has stimulated development of 3D data visualisation software. Conventional 2-dimensional images of cell (optical) sections obtained in a transmission electron or optical microscopes and more sophisticated multidimensional imaging methods require processing software capable of 3D rendering and mathematically transforming data in 3-, 4-, or more dimensions. The richness of data obtained from the different nuclear microscopy imaging techniques and often parallel information channels (X-ray, secondary electron, Scanning Transmission Ion Microscopy) is often not obviou…
Experimental visualization of inoculation using a charged colloidal model system
2012
Inoculation is widely used to tune the microstructure of a polycrystalline solid from the melt and thus its material properties. We present here a systematic time resolved experimental study of inoculation in a charged colloidal model system investigating the changes of the crystallization scenario upon adding spherical seeds and show that the nucleation kinetics solely determines the resulting microstructure.
STREAM: Single-cell Trajectories Reconstruction, Exploration And Mapping of omics data
2018
AbstractSingle-cell transcriptomic assays have enabled the de novo reconstruction of lineage differentiation trajectories, along with the characterization of cellular heterogeneity and state transitions. Several methods have been developed for reconstructing developmental trajectories from single-cell transcriptomic data, but efforts on analyzing single-cell epigenomic data and on trajectory visualization remain limited. Here we present STREAM, an interactive pipeline capable of disentangling and visualizing complex branching trajectories from both single-cell transcriptomic and epigenomic data.
Predicting the environmental suitability for onchocerciasis in Africa as an aid to elimination planning
2021
Recent evidence suggests that, in some foci, elimination of onchocerciasis from Africa may be feasible with mass drug administration (MDA) of ivermectin. To achieve continental elimination of transmission, mapping surveys will need to be conducted across all implementation units (IUs) for which endemicity status is currently unknown. Using boosted regression tree models with optimised hyperparameter selection, we estimated environmental suitability for onchocerciasis at the 5 × 5-km resolution across Africa. In order to classify IUs that include locations that are environmentally suitable, we used receiver operating characteristic (ROC) analysis to identify an optimal threshold for suitabil…
Query expansion and semantic visualization in information system cooperations : methods and tools for information retrieval
2010
This thesis presents approaches and tools for information retrieval. Our work is part of a cooperation system based on ontologies called OWSCIS (Ontology and Web Service based Cooperation of Information Sources). We treat the problem of information retrieval by providing an enrichment method called QUEXME (QUery EXpansion MEthod) of queries based on analysis of user behavior and using the concept importance notion with regards to query. We also discussed the problem of visualization in the OWSCIS system offering a architecture of service visualization. It is composed of three modules: the request, enrichment and results. The approaches proposed in this thesis have been prototyped and the te…
A Systemic Review with Visualization using Adjutant: Application in Case of Febrile Seizure Research
2020
Febrile seizures (FS) on pediatric age is challenging because it’s higher incidence and recurrence as neurologic disorder in childhood. Our study show an approach to perform a systemic, in-depth, updated review analysis with visualization on current knowledge about febrile seizure. We performed a literature search of Pub Med research articles related to febrile seizure that were published until August 2020. The automated search was conducted using R open source package Adjutant with the following query terms: “febrile AND (seizures OR convuls*)”. The search resulted in 8200 documents corpus and 45 cluster topics. This kind of analysis and visualization could be useful for practitioners and …
Visualization practices in Scandinavian newsrooms : a qualitative study
2017
The visualization of numeric data is becoming an important element in journalism, and new tools and platforms make the development of data visualization in the news discourse accelerate. In this paper we present an interview study investigating this development in Scandinavian newsrooms. Editorial leaders, data journalists, graphic designers, and developers in 10 major news organizations in Norway, Sweden and Denmark inform the study on a range of issues concerning visual practices and experiences in the newsrooms. Elements of tension are revealed on issues concerning the role and effect of complex, exploratory data visualizations and concerning the role of ordinary journalists in the produ…
Virtual articulator for the analysis of dental occlusion: An update
2010
The future of dental practice is closely linked to the utilization of computer-based technology, specifically virtual reality, which allows the dental surgeon to simulate true life situations in patients. The virtual articulator has been designed for the exhaustive analysis of static and dynamic occlusion, with the purpose of substituting mechanical articulators and avoiding their errors. These tools will help both odontologists and dental prosthetists to provide the best individualized treatment for each patient. The present review analyzes the studies published in the literature on the design, functioning and applications of virtual articulators. A Medline-PubMed search was made of dental…
Asynchronous Occlusion Culling on Heterogeneous PC Clusters for Distributed 3D Scenes
2012
We present a parallel rendering system for heterogeneous PC clusters to visualize massive models. One single, powerful visualization node is supported by a group of backend nodes with weak graphics performance. While the visualization node renders the visible objects, the backend nodes asynchronously perform visibility tests and supply the front end with visible scene objects. The visualization node stores only currently visible objects in its memory, while the scene is distributed among the backend nodes’ memory without redundancy. To efficiently compute the occlusion tests in spite of that each backend node stores only a fraction of the original geometry, we complete the scene by adding h…