Search results for "amine"

showing 10 items of 7299 documents

TWJ-Screen: an isothermal screening assay to assess ligand/DNA junction interactions in vitro

2017

International audience; The quest for chemicals able to operate at selected genomic loci in a spatiotemporally controlled manner is desirable to create manageable DNA damages. Mounting evidence now shows that alternative DNA structures, including G-quadruplexes and branched DNA (or DNA junctions), might hamper proper progression of replication fork, thus triggering DNA damages and genomic instability. Therefore, small molecules that stabilize these DNA structures are currently scrutinized as a promising way to create genomic defects that cannot be dealt with properly by cancer cells. While much emphasis has been recently given to G-quadruplexes and related ligands, we report herein on three…

DNA ReplicationLigands[SDV.BBM.BM] Life Sciences [q-bio]/Biochemistry Molecular Biology/Molecular biology[ CHIM ] Chemical SciencesGenomic InstabilitySmall Molecule LibrariesStructure-Activity Relationship[ SDV.MHEP ] Life Sciences [q-bio]/Human health and pathology[SDV.BBM] Life Sciences [q-bio]/Biochemistry Molecular BiologyHumans[CHIM]Chemical Sciences[SDV.BBM]Life Sciences [q-bio]/Biochemistry Molecular BiologyFluorescent DyesDNA CruciformBase SequenceGenome HumanRhodamines[CHIM.ORGA]Chemical Sciences/Organic chemistry[SDV.BBM.BM]Life Sciences [q-bio]/Biochemistry Molecular Biology/Molecular biology[CHIM.ORGA] Chemical Sciences/Organic chemistryIntercalating AgentsHigh-Throughput Screening AssaysG-QuadruplexesGenetic LociMethods Online[SDV.MHEP]Life Sciences [q-bio]/Human health and pathologyDNA Damage
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Modulation of Base Excision Repair Alters Cellular Sensitivity to UVA1 but not to UVB¶

2007

Abstract Oxidative DNA damage has been implicated in some of the biological properties of UVA but so far not in the acute photosensitivity or cellular sensitivity. In contrast to pyrimidine dimers, oxidative DNA damage is predominantly processed by base excision repair (BER). In order to further clarify the role of oxidative DNA damage and its repair in the acute cellular response to UV light, we studied UVA1 and UVB sensitivities in three different cell model systems with modified BER. 8-Oxoguanine-DNA-glycosylase 1–/– (OGG1–/–) mouse embryonal fibroblasts and human fibroblasts in which BER was inhibited by incubation with methoxyamine were hypersensitive to UVA1, in particular to low dose…

DNA damageChinese hamster ovary cellCellPyrimidine dimerGeneral MedicineBase excision repairBiologyBiochemistryMolecular biologychemistry.chemical_compoundmedicine.anatomical_structurechemistryPhotosensitivityBiochemistryDownregulation and upregulationMethoxyaminemedicinePhysical and Theoretical ChemistryPhotochemistry and Photobiology
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Oxidative DNA cleavage by copper ternary complexes of 1,10-phenanthroline and ethylenediamine-sulfonamide derivatives

2009

Abstract Ternary copper(II) complexes (1–3) of 1,10-phenanthroline and ethylenediamine-R-sulfonamide derivatives (R = benzene, toluene and naphthalene rings) have been synthesized and characterized with the aid of X-ray diffraction and spectroscopic and electrochemical techniques. The crystal structures of the complexes show that the coordination polyhedron around copper(II) is distorted square planar. Both 1,10-phenanthroline and ethylenediamine-R-sulfonamide act as bidentate ligands. The three structures are stabilized by π–π stacking interactions. The interaction of the complexes with calf thymus DNA has been investigated by thermal denaturation studies which indicated that DNA was stabi…

DNA damageReducing agentPhenanthrolinechemistry.chemical_elementEthylenediamineCleavage (embryo)PhotochemistryCopperInorganic Chemistrychemistry.chemical_compoundchemistryPolymer chemistryMaterials ChemistryHydroxyl radicalPhysical and Theoretical ChemistryDNAPolyhedron
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Inhibitors acting on nucleic acid synthesis in an oncogenic RNA virus.

1971

IN infection with an oncogenic RNA virus, synthesis of viral RNA seems to be catalysed by an RNA dependent DNA polymerase in the host cell1–4. Several specific inhibitors of viral DNA polymerases have been found5–7 and Spiegelman8 has shown that the activity of viral enzymes depends strongly on the chemical composition of the template. We report here first a new highly specific poison of the Rauscher murine leukaemia virus (RMLV) DNA polymerases; second, several inactivators of the RNA and DNA template involved in the RMLV enzyme systems; and third, the action of actinomycin D on viral DNA polymerases and on host DNA/RNA polymerase. The results are discussed with respect to the influence of…

DNA polymerasevirusesRNA-dependent RNA polymeraseRauscher VirusGeneral Biochemistry Genetics and Molecular BiologyHistoneschemistry.chemical_compoundMiceRNA polymeraseSense (molecular biology)AnimalsProtaminesPolymerasebiologyHeparinDaunorubicinRNARNA virusCongo RedGeneral Medicinebiology.organism_classificationMolecular biologyPhenanthridineschemistryBiochemistryDNA NucleotidyltransferasesDNA Viralbiology.proteinDactinomycinAcridinesRNA ViralDNAOlivomycinsNature: New biology
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Effects of HIV, antiretroviral therapy and prebiotics on the active fraction of the gut microbiota

2018

In a recent blinded randomized study, we found that in HIV-infected individuals a short supplementation with prebiotics (scGOS/lcFOS/glutamine) ameliorates dysbiosis of total gut bacteria, particularly among viremic untreated patients. Our study goal was to determine the fraction of the microbiota that becomes active during the intervention and that could provide additional functional information.A total of six healthy individuals, and 16 HIV-infected patients comprising viremic untreated patients (n = 5) and antiretroviral therapy-treated patients that are further divided into immunological responders (n = 7) and immunological nonresponders (n = 4) completed the 6-week course of prebiotic …

DNA Bacterial0301 basic medicine030106 microbiologyImmunologyHuman immunodeficiency virus (HIV)HIV InfectionsGut floramedicine.disease_causeDNA Ribosomallaw.inventionPlacebos03 medical and health sciencesPharmacotherapyImmune systemRandomized controlled triallawRNA Ribosomal 16SmedicineCluster AnalysisHumansImmunology and AllergyPhylogenyBacteriabiologybusiness.industrySequence Analysis DNAMiddle Agedmedicine.diseasebiology.organism_classificationAntiretroviral therapyGastrointestinal MicrobiomeGlutaminePrebiotics030104 developmental biologyInfectious DiseasesAnti-Retroviral AgentsImmunologybusinessDysbiosisFollow-Up StudiesAIDS
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Selection of amine-oxidizing dairy lactic acid bacteria and identification of the enzyme and gene involved in the decrease of biogenic amines

2016

ABSTRACT Accumulation of biogenic amines (BAs) in cheese and other foods is a matter of public health concern. The aim of this study was to identify the enzyme activities responsible for BA degradation in lactic acid bacteria which were previously isolated from traditional Sicilian and Apulian cheeses. The selected strains would control the concentration of BAs during cheese manufacture. First, 431 isolates not showing genes encoding the decarboxylases responsible for BA formation were selected using PCR-based methods. Ninety-four out of the 431 isolates degraded BAs (2-phenylethylamine, cadaverine, histamine, putrescine, spermine, spermidine, tyramine, or tryptamine) during cultivation on …

DNA Bacterial0301 basic medicineBiogenic AminesLactobacillus caseiBiotechnology; Food Science; Applied Microbiology and Biotechnology; EcologyCarboxy-Lyases030106 microbiologyApplied Microbiology and BiotechnologyMicrobiology03 medical and health scienceschemistry.chemical_compoundBacterial ProteinsCheeseRNA Ribosomal 16SFood microbiologyCadaverineBacteriaBase SequencebiologyEcologyLactococcus lactisfood and beveragesStreptococcusTyraminebiology.organism_classificationLactic acidLactobacillus030104 developmental biologychemistryWeissellaFood MicrobiologyPutrescineOxidoreductasesEnterococcusBacteriaBiotechnologyFood ScienceSettore AGR/16 - Microbiologia Agraria
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Putrescine as a signal to modulate the indispensable ABA increase under cold stress.

2009

2 páginas -- PAGS nros. 219-220

DNA BacterialAcclimatizationMutantArabidopsisCold acclimationPlant ScienceBiologyGenes Plantchemistry.chemical_compoundGene Expression Regulation PlantpolyamineFreezingCold acclimationputrescineMode of actionAnalysis of VarianceArabidopsis ProteinsReverse Transcriptase Polymerase Chain ReactionGene Expression ProfilingfungiWild typefood and beveragesfreezing toleranceArticle AddendumComplementationCold TemperatureMutagenesis InsertionalArginine decarboxylasechemistryBiochemistryABARNA PlantMutationPutrescinegene expressionPolyamineArginine decarboxylaseAbscisic AcidResearch ArticlePlant signalingbehavior
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Sphingobium aromaticiconvertens sp. nov., a xenobiotic-compound-degrading bacterium from polluted river sediment.

2007

A bacterial strain capable of degrading some monochlorinated dibenzofurans, designated RW16T, was isolated from aerobic River Elbe sediments. The strain was characterized based on 16S rRNA gene sequence analysis, DNA G+C content, physiological characteristics, polyamines, ubiquinone and polar lipid pattern and fatty acid composition. This analysis revealed that strain RW16T represents a novel species of the genus Sphingobium. The DNA G+C content of strain RW16T, 60.7 mol%, is the lowest yet reported for the genus. 16S rRNA gene sequence analysis placed strain RW16T as an outlier in the genus Sphingobium. The name Sphingobium aromaticiconvertens sp. nov. is proposed for this dibenzofuran-min…

DNA BacterialGeologic SedimentsMolecular Sequence DataMicrobiologyDNA RibosomalMicrobiologychemistry.chemical_compoundRiversGermanyRNA Ribosomal 16SSequence Homology Nucleic AcidSphingobium aromaticiconvertensPolyaminesWater Pollution ChemicalEcology Evolution Behavior and SystematicsPhospholipidsPhylogenyBenzofuransBase CompositionRiver sedimentbiologyEcologyFatty AcidsQuinonesGenes rRNAGeneral MedicineSequence Analysis DNABiodegradationDibenzofurans Polychlorinated16S ribosomal RNAbiology.organism_classificationBacterial Typing TechniquesSphingomonadaceaeRNA BacterialchemistryCarbohydrate MetabolismXenobioticGenus SphingobiumDNABacteriaInternational journal of systematic and evolutionary microbiology
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Oligonucleotide-capped mesoporous silica nanoparticles as DNA-responsive dye delivery systems for genomic DNA detection

2015

[EN] New hybrid oligonucleotide-capped mesoporous silica nanoparticles able to detect genomic DNA were designed.

DNA BacterialINGENIERIA DE LA CONSTRUCCIONDesignControlled-releaseSupportsOligonucleotidesNanoparticleNanotechnologyCatalysisLegionella pneumophilachemistry.chemical_compoundQUIMICA ORGANICAhemic and lymphatic diseasesCandida albicansBIOQUIMICA Y BIOLOGIA MOLECULARMaterials ChemistryMycoplasma fermentansColoring AgentsStimuliRhodaminesOligonucleotideChemistryQUIMICA INORGANICAMetals and AlloysGenomicsGeneral ChemistryMesoporous silicaSilicon DioxideControlled releaseDrug-deliverySurfaces Coatings and FilmsElectronic Optical and Magnetic Materialsgenomic DNADrug deliveryCeramics and CompositesNanoparticlesDNAChemical Communications
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Euzebyella saccharophila gen. nov., sp. nov., a marine bacterium of the family Flavobacteriaceae.

2010

Strain 7SM30T , an aerobic marine, Gram-negative, heterotrophic and yellow- to orange-pigmented bacterium isolated from seawater from Castellón, Spain, was characterized using a polyphasic approach. Analysis of the 16S rRNA gene sequence showed that the isolate represented a novel lineage within the family Flavobacteriaceae. The most closely related genera were Pseudozobellia, Zobellia and Kriegella. Cells of strain 7SM30T were non-motile rods that required sea salts for growth, used a wide variety of carbohydrates as sole carbon and energy sources and, unlike species of the genera Pseudozobellia and Zobellia, did not possess flexirubin-type pigment or hydrolyse agar. Strain 7SM30T containe…

DNA BacterialSequence analysisMolecular Sequence DataEMENDED DESCRIPTIONMicrobiologyMicrobiologyPhylogeneticsRNA Ribosomal 16SSeawaterEcology Evolution Behavior and SystematicsPhylogenyBase CompositionbiologyPigmentationPhosphatidylethanolaminesTAXAFatty AcidsVitamin K 2General MedicineSequence Analysis DNARibosomal RNAbiology.organism_classification16S ribosomal RNAFlavobacteriaceaeBacterial Typing TechniquesType speciesSpainEnergy sourceFlavobacteriaceaeBacteriaInternational journal of systematic and evolutionary microbiology
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