Search results for "arrangement."

showing 10 items of 343 documents

Comparative analysis of two paradigm bacteriophytochromes reveals opposite functionalities in two-component signaling

2021

Bacterial phytochrome photoreceptors usually belong to two-component signaling systems which transmit environmental stimuli to a response regulator through a histidine kinase domain. Phytochromes switch between red light-absorbing and far-red light-absorbing states. Despite exhibiting extensive structural responses during this transition, the model bacteriophytochrome from Deinococcus radiodurans (DrBphP) lacks detectable kinase activity. Here, we resolve this long-standing conundrum by comparatively analyzing the interactions and output activities of DrBphP and a bacteriophytochrome from Agrobacterium fabrum (Agp1). Whereas Agp1 acts as a conventional histidine kinase, we identify DrBphP a…

Histidine KinaseLightPROTEINSScienceAgrobacteriumHISTIDINE KINASESKinasesMolecular Dynamics SimulationPhotoreceptors MicrobialTRANSDUCTIONArticleCYANOBACTERIAL PHYTOCHROME CPH1ACTIVATIONBacterial ProteinsProtein DomainsCRYSTAL-STRUCTUREPHOSPHORYLATIONX-ray crystallographyBacterial structural biologyQREARRANGEMENTSphotoreceptorsAGROBACTERIUM-TUMEFACIENSPhosphoric Monoester HydrolasesINSIGHTSbacterial phytochromesEnzyme mechanismsbacteriaDeinococcus3111 BiomedicineSignal Transduction
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Optogenetic Control of Bacterial Expression by Red Light

2022

In optogenetics, as in nature, sensory photoreceptors serve to control cellular processes by light. Bacteriophytochrome (BphP) photoreceptors sense red and far-red light via a biliverdin chromophore and, in response, cycle between the spectroscopically, structurally, and functionally distinct Pr and Pfr states. BphPs commonly belong to two-component systems that control the phosphorylation of cognate response regulators and downstream gene expression through histidine kinase modules. We recently demonstrated that the paradigm BphP from Deinococcus radiodurans exclusively acts as a phosphatase but that its photosensory module can control the histidine kinase activity of homologous receptors.…

HistoryfytokromitSIGNALING MECHANISMHistidine KinaseLightPolymers and PlasticsBiomedical EngineeringHISTIDINE KINASESfotobiologiasensory photoreceptorBiochemistry Genetics and Molecular Biology (miscellaneous)Industrial and Manufacturing EngineeringbakteeritOPTICAL CONTROLgeeniekspressioBusiness and International ManagementoptogeneticsHEME OXYGENASEGENE-EXPRESSIONphytochromeoptogenetiikkaPHOTORECEPTORSBacteriaBiliverdineREARRANGEMENTSBACTERIOPHYTOCHROMESGeneral MedicinePhosphoric Monoester HydrolasesOptogeneticsreseptorit (biokemia)two-component systemESCHERICHIA-COLIgene expression1182 Biochemistry cell and molecular biology3111 BiomedicinePhytochromevalosignal transductionSSRN Electronic Journal
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Mapping Retrotransposon LINE-1 Sequences into Two Cebidae Species and Homo sapiens Genomes and a Short Review on Primates

2022

This work focuses on the distribution of LINE-1 (a Long Interspersed Nuclear Element) in primates and its role during evolution and as a constituent of the architecture of primate genomes. To pinpoint the LINE-1 repeat distribution and its role among primates, LINE-1 probes were mapped onto chromosomes of Homo sapiens (Hominidae, Catarrhini), Sapajus apella, and Cebus capucinus (Cebidae, Platyrrhini) using fluorescence in situ hybridisation (FISH). The choice of platyrrhine species are due to the fact they are taxa characterised by a high level of rearrangements; for this reason, they could be a useful model for the study of LINE-1 and chromosome evolution. LINE-1 accumulation was found in …

Homo sapiensX ChromosomeRetroelements<i>Sapajus apella</i>; <i>Cebus capucinus</i>; <i>Homo sapiens</i>; LINE; rearrangements; centromereLINELong Interspersed Nucleotide ElementscentromereSapajus apellaKaryotypingCebidaeGeneticsCebus capucinusrearrangementsAnimalsHumansCebusGenetics (clinical)
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Titanium complexes for the formation of nitrogen compounds : synthesis of homoallylamines and amidines

2011

Homoallylic amines are key reagents for the formation of a large number of biologically interesting products. Due to the double bond of their allylic moiety, easily functionalisable, they are commonly used in organic synthesis. This research work deals with the synthesis of homoallylic amines thanks to titanium complexes. In fact, the reductive coupling between of imines and dienes promoted by titanium allows the formation of diastereoisomeric homoallylamines syn and anti. The diastereoselectivity of the reaction is directly affected by the nitrogen substituent. Whether it is benzyl or phenyl, the selectivity will be in favour of syn or anti respectively. Moreover, the addition of a the Lew…

Homoallylic aminesTitaniumDérivés benzotriazoleAllyltitanationHomoallyl-(E)-homocrotylaminesHomoallylaminesMacrocyclic diamidinesRéarrangement cationique 2-Aza-CopeTitaneCationic 2-Aza- Cope rearrangementDioxocyclamesDérivés bis(benzotriazole)HomocrotylaminesBenzotriazole derivatives[CHIM.OTHE] Chemical Sciences/Other[ CHIM.OTHE ] Chemical Sciences/OtherBis(benzotriazole) derivativesDioxocyclamsAmines homoallyliques[CHIM.OTHE]Chemical Sciences/OtherDiamidines macrocyliques
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Lewis acid-catalyzed Beckmann rearrangement of ketoximes in ionic liquids

2009

Abstract The Beckmann rearrangement of five ketoximes was done in 17 different ionic liquids by using four Lewis acids. The effect of the type of cation and the type of anion in the ionic liquid on the rate of the rearrangement reaction and product composition is compared and discussed. The effects of the hydrophobicity and the hydrogen bonding ability of ionic liquids on the rearrangement of ketoximes were investigated, as well as the catalytical activity of the Lewis acids.

Hydrogen bondProcess Chemistry and TechnologyGeneral ChemistrySigmatropic reactionCatalysisIonCatalysischemistry.chemical_compoundchemistryBeckmann rearrangementIonic liquidPolymer chemistryOrganic chemistryRearrangement reactionLewis acids and basesCatalysis Communications
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Regio- and stereoselective oxyfunctionalization at C-1 and C-5 in sesquiterpene guaianolides

1998

Abstract The regio- and stereoselective functionalization at C-1 and C-5 positions in a guaiane skeleton by allylic hydroxylation are described. The stereochemistry of the resulting compounds are identical to those of the majority of natural 1- and 5-hydroxy-guaianolides.

Hydroxylationchemistry.chemical_compoundAllylic rearrangementchemistryStereochemistryOrganic ChemistryDrug DiscoveryOrganic chemistryStereoselectivitySesquiterpeneBiochemistryTetrahedron
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Hardy’s inequality and the boundary size

2002

We establish a self-improving property of the Hardy inequality and an estimate on the size of the boundary of a domain supporting a Hardy inequality.

Hölder's inequalityKantorovich inequalityMathematics::Functional AnalysisPure mathematicsInequalityMathematics::Complex VariablesApplied MathematicsGeneral Mathematicsmedia_common.quotation_subjectMathematical analysisMathematics::Classical Analysis and ODEsBoundary (topology)Mathematics::Spectral TheoryLog sum inequalityRearrangement inequalityCauchy–Schwarz inequalityHardy's inequalityMathematicsmedia_commonProceedings of the American Mathematical Society
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On improved fractional Sobolev–Poincaré inequalities

2016

We study a certain improved fractional Sobolev–Poincaré inequality on domains, which can be considered as a fractional counterpart of the classical Sobolev–Poincaré inequality. We prove the equivalence of the corresponding weak and strong type inequalities; this leads to a simple proof of a strong type inequality on John domains. We also give necessary conditions for the validity of an improved fractional Sobolev–Poincaré inequality, in particular, we show that a domain of finite measure, satisfying this inequality and a ‘separation property’, is a John domain.

Hölder's inequalityKantorovich inequalityPure mathematicsYoung's inequalityBernoulli's inequalityGeneral Mathematics010102 general mathematicsMathematical analysisMinkowski inequality01 natural sciences010101 applied mathematicsLog sum inequalityRearrangement inequality0101 mathematicsCauchy–Schwarz inequalityMathematicsArkiv för Matematik
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THE LENDING ARRANGEMENTS OF THE IMF IN EUROPEAN UNION IN TIMES OF CRISIS – CHARACTERISTICS AND EVOLUTIONS

2014

This paper focuses on the lending arrangements of the IMF in EU countries during crisis period. First, we reviewed the literature regarding IMF-supported programs in times of crisis. On the other hand, we provided a description of the IMF arrangements in EU countries in 2008-2013. We found that these programs differ in type, duration, amount and conditionality, but not significantly in their key objectives (achieving sustainable public finances and ensuring financial sector stability).

IMF lending arrangements EU countries crisisStudies in Business and Economics
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Over 30% of patients with splenic marginal zone lymphoma express the same immunoglobulin heavy variable gene: ontogenetic implications.

2012

We performed an immunogenetic analysis of 345 IGHV-IGHD-IGHJ rearrangements from 337 cases with primary splenic small B-cell lymphomas of marginal-zone origin. Three immunoglobulin (IG) heavy variable (IGHV) genes accounted for 45.8% of the cases (IGHV1-2, 24.9%; IGHV4-34, 12.8%; IGHV3-23, 8.1%). Particularly for the IGHV1-2 gene, strong biases were evident regarding utilization of different alleles, with 79/86 rearrangements (92%) using allele *04. Among cases more stringently classified as splenic marginal-zone lymphoma (SMZL) thanks to the availability of splenic histopathological specimens, the frequency of IGHV1-2*04 peaked at 31%. The IGHV1-2*04 rearrangements carried significantly lo…

Immunoglobulin geneModels MolecularCancer ResearchGenes Immunoglobulin Heavy ChainGene Rearrangement B-Lymphocyte Heavy ChainImmunoglobulin Variable RegionSomatic hypermutationSplenic NeoplasmBiologyCohort StudiesantigenmedicineHumansSplenic marginal zone lymphomaAlleleGeneticsSplenic Neoplasmssplenic marginal-zone lymphomaHematologyGene rearrangementLymphoma B-Cell Marginal Zonemedicine.diseasePrognosisComplementarity Determining Regionssomatic hypermutationimmunoglobulin geneOncologyMutationIGHDsplenic marginal-zone lymphoma; immunoglobulin gene; somatic hypermutation; CDR3; antigenCDR3IGHV@Leukemia
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