Search results for "binding"
showing 10 items of 3896 documents
Structure and superconductivity in LnNi2B2C: comparison of calculation and experiment
2001
Abstract The experimental relation between the superconducting transition temperature ( T c ) and lattice size for the lanthanide nickel borocarbides is clarified. The electronic density of states (DOS) at the Fermi energy is calculated by the LMTO method for selected non-magnetic lanthanides. The T c and the DOS are both shown to scale in the same way with a structural parameter that characterizes the bond angle in the NiB 4 tetrahedra. The results strongly support arguments that the suppression of superconductivity on going from smaller to larger lanthanides in the quaternary nickel borocarbides is structurally driven. A structure– T c relationship of this type is unusual for intermetalli…
Amphiphilic Polyphenylene Dendron Conjugates for Surface Remodeling of Adenovirus 5
2020
Abstract Amphiphilic surface groups play an important role in many biological processes. The synthesis of amphiphilic polyphenylene dendrimer branches (dendrons), providing alternating hydrophilic and lipophilic surface groups and one reactive ethynyl group at the core is reported. The amphiphilic surface groups serve as biorecognition units that bind to the surface of adenovirus 5 (Ad5), which is a common vector in gene therapy. The Ad5/dendron complexes showed high gene transduction efficiencies in coxsackie‐adenovirus receptor (CAR)‐negative cells. Moreover, the dendrons offer incorporation of new functions at the dendron core by in situ post‐modifications, even when bound to the Ad5 sur…
Atomistic Calculations of Positron Surface States
1983
We report on the results of an atomistic, discrete-lattice calculation of positron surface states on the three principal surfaces of Al and Cu. We are able to (i) accurately reproduce the observed values and anisotropy of the binding energies, and (ii) predict the surface state life times. Furthermore, we calculate (iii) the positron lateral diffusion constant, and find it considerably enhanced over the bulk value. We also investigate (iv) the positron trapping at surface vacancies, and (v) the effect of ordered chemisorbed monolayers of oxygen. We find that the oxidation lowers the binding energy and makes the surface state unstable with respect to positronium emission on Al (100) and Al (…
Constraining the surface properties of effective Skyrme interactions
2016
The purpose of this study is threefold: first, to identify a scheme for the determination of the surface energy coefficient a_surf that offers the best compromise between robustness, precision, and numerical efficiency; second, to analyze the correlation between values for a_surf and the characteristic energies of the fission barrier of Pu240; and third, to lay out a procedure how the deformation properties of the Skyrme energy density functional (EDF) can be constrained during the parameter fit. There are several frequently used possibilities to define and calculate the surface energy coefficient a_surf of effective interactions. The most direct access is provided by the model system of se…
Engineering Proteins at Interfaces: From Complementary Characterization to Material Surfaces with Designed Functions
2018
Abstract Once materials come into contact with a biological fluid containing proteins, proteins are generally—whether desired or not—attracted by the material's surface and adsorb onto it. The aim of this Review is to give an overview of the most commonly used characterization methods employed to gain a better understanding of the adsorption processes on either planar or curved surfaces. We continue to illustrate the benefit of combining different methods to different surface geometries of the material. The thus obtained insight ideally paves the way for engineering functional materials that interact with proteins in a predetermined manner.
Superparamagnetic γ-Fe2O3 nanoparticles with tailored functionality for protein separation
2007
Polymer coated superparamagnetic gamma-Fe(2)O(3) nanoparticles were derivatized with a synthetic double-stranded RNA [poly(IC)], a known allosteric activator of the latent (2-5)A synthetase, to separate a single 35 kDa protein from a crude extract which cross reacted with antibodies raised against the sponge enzyme.
Surface-exposed Amino Acid Residues of HPV16 L1 Protein Mediating Interaction with Cell Surface Heparan Sulfate
2007
Efficient infection of cells by human papillomaviruses (HPVs) and pseudovirions requires primary interaction with cell surface proteoglycans with apparent preference for species carrying heparan sulfate (HS) side chains. To identify residues contributing to virus/cell interaction, we performed point mutational analysis of the HPV16 major capsid protein, L1, targeting surface-exposed amino acid residues. Replacement of lysine residues 278, 356, or 361 for alanine reduced cell binding and infectivity of pseudovirions. Various combinations of these amino acid exchanges further decreased cell attachment and infectivity with residual infectivity of less than 5% for the triple mutant, suggesting …
Protein-lipid interactions at the air-water interface.
2010
International audience; Protein−lipid interactions play an important role in a variety of fields, for example in pharmaceutical research, biosensing, or food science. However, the underlying fundamental processes that govern the interplay of lipids and proteins are often very complex and are therefore studied using model systems. Here, Langmuir monolayers were used to probe the interaction of a model protein with lipid films at the air−water interface. The protein β-lactoglobulin (βlg) is the major component in bovine milk serum, where it coexists with the milk fat globular membrane. During homogenization of milk, βlg adsorbs to the interface of lipid fat globules and stabilizes the oil-in-…
Regulation of cell cycle transcription factor Swi5 by karyopherin Msn5
2012
AbstractInactivation of S. cerevisiae β-karyopherin Msn5 causes hypersensitivity to the overexpression of mitotic cyclin Clb2 and aggravates growth defects of many mutant strains in mitotic exit, suggesting a connection between Msn5 and mitotic exit. We determined that Msn5 controlled subcellular localization of the mitotic exit transcription factor Swi5, since it was required for Swi5 nuclear export. Msn5 physically interacted with the N-terminal end of Swi5. Inactivation of Msn5 caused a severe reduction in cellular levels of Swi5 protein. This effect occurred by a post-transcriptional mechanism, since SWI5 mRNA levels were not affected. The reduced amount of Swi5 in msn5 mutant cells was…
Determinants essential for the transmissible gastroenteritis virus-receptor interaction reside within a domain of aminopeptidase-N that is distinct f…
1994
The swine-specific coronavirus transmissible gastroenteritis virus (TGEV) uses pig aminopeptidase-N (pAPN) as a cellular receptor. We showed that the human aminopeptidase-N (hAPN) cannot substitute for pAPN in this respect, although the two enzymes have 80% amino acid sequence identity. In order to map the TGEV binding site on pAPN, we constructed a series of APN cDNA chimeras between pAPN and hAPN and analyzed them for their capacity to confer infectivity. The region between residues 717 and 813 was found to be essential for infectivity. This region also contains the epitopes for three TGEV-blocking monoclonal antibodies directed against pAPN. These data support the view that the catalytic…