Search results for "dsRNA"

showing 3 items of 3 documents

RNA interference in Lepidoptera: an overview of successful and unsuccessful studies and implications for experimental design.

2011

International audience; Gene silencing through RNA interference (RNAi) has revolutionized the study of gene function, particularly in non-model insects. However, in Lepidoptera (moths and butterflies) RNAi has many times proven to be difficult to achieve. Most of the negative results have been anecdotal and the positive experiments have not been collected in such a way that they are possible to analyze. In this review, we have collected detailed data from more than 150 experiments including all to date published and many unpublished experiments. Despite a large variation in the data, trends that are found are that RNAi is particularly successful in the family Saturniidae and in genes involv…

0106 biological sciencesPhysiology[SDV]Life Sciences [q-bio]Tissue uptakeBioinformatics01 natural sciencesRNA interferenceRNA interferenceDatabases GeneticDelivery methodsCaenorhabditis elegansRegulation of gene expression0303 health sciencesIMMUNE-RESPONSESMANDUCA-SEXTALepidopteraRNA silencingSILKWORM BOMBYX-MORIResearch DesignInsect ProteinsRNA InterferenceMESSENGER-RNAHELICOVERPA-ARMIGERADOUBLE-STRANDED-RNAComputational biologyBiologyLepidoptera genitaliadsRNA properties03 medical and health sciencesBACILLUS-THURINGIENSISSMALL SILENCING RNASGene silencingAnimalsGene SilencingGene030304 developmental biologyRNA Double-StrandedMechanism (biology)fungiBiology and Life SciencesARMYWORM SPODOPTERA-FRUGIPERDAbiology.organism_classificationImmunity Innate010602 entomologyGene Expression RegulationInsect ScienceEpidermisCAENORHABDITIS-ELEGANSGene functionJournal of insect physiology
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New Insights into the Genome Organization of Yeast Killer Viruses Based on “Atypical” Killer Strains Characterized by High-Throughput Sequencing

2017

Viral M-dsRNAs encoding yeast killer toxins share similar genomic organization, but no overall sequence identity. The dsRNA full-length sequences of several known M-viruses either have yet to be completed, or they were shorter than estimated by agarose gel electrophoresis. High-throughput sequencing was used to analyze some M-dsRNAs previously sequenced by traditional techniques, and new dsRNAs from atypical killer strains of Saccharomyces cerevisiae and Torulaspora delbrueckii. All dsRNAs expected to be present in a given yeast strain were reliably detected and sequenced, and the previously-known sequences were confirmed. The few discrepancies between viral variants were mostly located aro…

0301 basic medicineRNA recombinationGenotypeHealth Toxicology and Mutagenesis030106 microbiologySaccharomyces cerevisiaelcsh:MedicineTorulaspora delbrueckiidsRNAGenome ViralSaccharomyces cerevisiaeToxicologyGenomeDNA sequencingArticle<i>Saccharomyces cerevisiae</i>; <i>Torulaspora delbrueckii</i>; killer; virus genome; dsRNA; sequencing; HTS; RNA recombination; phylogenetic originphylogenetic origin03 medical and health sciencesTorulaspora delbrueckiiGenomic organizationGeneticsbiologyPhylogenetic treelcsh:RHigh-Throughput Nucleotide SequencingTorulasporasequencingbiology.organism_classificationYeastTorulasporaKiller Factors Yeast030104 developmental biologyPhenotypevirus genomeVirusesRNA ViralHTSkillerToxins
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2′,5′-oligoadenylate synthetase from a lower invertebrate, the marine sponge Geodia cydonium, does not need dsRNA for its enzymatic activity

2002

AbstractRecently, the presence of 2′,5′-linked oligoadenylates and a high 2′,5′-oligoadenylate synthetase activity were discovered in a lower invertebrate, the marine sponge Geodia cydonium. It has been demonstrated that mammalian 2–5A synthetase isozymes require a dsRNA cofactor for their enzymatic activity. Our results show that, unlike mammalian 2–5A synthetases, the 2–5A synthetase from the sponge acts in a dsRNA-independent manner in vitro. A prolonged incubation of the G. cydonium extract with a high concentration of a micrococcal nuclease had no effect on the activity of the 2–5A synthetase. At the same time, the micrococcal nuclease was effective within 30 min in degrading dsRNA nee…

Gene isoformInterferon InducersGeodia cydoniumdsRNABiologyIsozymePC12 CellsCofactorSubstrate SpecificitySpecies SpecificitySponge2'5'-Oligoadenylate SynthetaseAnimalsMicrococcal Nuclease2–5A synthetaseMolecular BiologyRNA Double-Strandedchemistry.chemical_classificationOligoribonucleotidesEnzymatic activity2'-5'-OligoadenylateAdenine NucleotidesRNACell BiologyHydrogen-Ion ConcentrationEnzymes ImmobilizedIn vitroPoriferaRatsEnzymePoly I-CBiochemistrychemistrybiology.proteinMicrococcal nucleaseBiochimica et Biophysica Acta (BBA) - Molecular Cell Research
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