Search results for "germplasm"
showing 10 items of 98 documents
Genomic variation in tomato, from wild ancestors to contemporary breeding accessions
2015
[EN] Background: Domestication modifies the genomic variation of species. Quantifying this variation provides insights into the domestication process, facilitates the management of resources used by breeders and germplasm centers, and enables the design of experiments to associate traits with genes. We described and analyzed the genetic diversity of 1,008 tomato accessions including Solanum lycopersicum var. lycopersicum (SLL), S. lycopersicum var. cerasiforme (SLC), and S. pimpinellifolium (SP) that were genotyped using 7,720 SNPs. Additionally, we explored the allelic frequency of six loci affecting fruit weight and shape to infer patterns of selection. Results: Our results revealed a pat…
An Agronomic Evaluation of New Safflower (Carthamus tinctorius L.) Germplasm for Seed and Oil Yields under Mediterranean Climate Conditions
2019
Interest in oilseed crops for agro-industrial research and development projects has increased in the Mediterranean area, in recent years. Safflower (Carthamus tinctorius L.) is of potential interest for agriculture mainly due to fatty acid content variability in the seed oil. The aim of this study was to assess the agronomic performance of 16 new safflower accessions together with safflower variety Montola 2000, used as a reference, in a semi-arid environment. Research was carried out in Sicily (Italy) from 2013&ndash
Characterization and conservation of Clinopodium raimondoi Spadaro, A.S. Faqi & Mazzola germplasm in the Parco della Favorita of Palermo city (Si…
2017
In urban areas, the parks represent an important source of plant biodiversity. The Parco della Favorita is the largest green area in Palermo city (Sicily, Italy). Clinopodium raimondoi Spadaro, A.S. Faqi & Mazzola is an aromatic plant species which has a range of uses in Sicilian traditional culture. The essential oil of this species is rich in terpene components and its aroma is similar to that of mint. The aim of this study was to enhance the germplasm of C. raimondoi in the Parco della Favorita. A collection-field was set up within the park. The main biometric and productive parameters of the species were determined and gas chromatographic analyses were carried out to determine the quali…
Population Structure in the Model Grass Brachypodium distachyon Is Highly Correlated with Flowering Differences across Broad Geographic Areas
2016
The small, annual grass Brachypodium distachyon (L.) Beauv., a close relative of wheat (Triticum aestivum L.) and barley (Hordeum vulgare L.), is a powerful model system for cereals and bioenergy grasses. Genome-wide association studies (GWAS) of natural variation can elucidate the genetic basis of complex traits but have been so far limited in B. distachyon by the lack of large numbers of well-characterized and sufficiently diverse accessions. Here, we report on genotyping-by-sequencing (GBS) of 84 B. distachyon, seven B. hybridum, and three B. stacei accessions with diverse geographic origins including Albania, Armenia, Georgia, Italy, Spain, and Turkey. Over 90,000 high-quality single-nu…
Organogenesis and encapsulation of in vitro-derived propagules of Carrizo citrange [Citrus sinensis (L.) Osb. × Poncirius trifoliata (L.) Raf]
2011
Due to widespread polyembryony, Citrus rootstocks are usually propagated by open-pollinated seed germination, although micropropagation offers many advantages. Encapsulation technology has recently attracted the interest of researchers in the field of plant propagation because it combines the advantages of zygotic or gamic seeds with those of micropropagation. In this study, we examined the encapsulation of Carrizo citrange uninodal microcuttings (3–4 mm long) and evaluated the influence of the calcium alginate coating, a short time storage at cold temperature, and different sowing substrates on the viability and regrowth of the explants. A secondary aim was to develop an efficient protocol…
Exploiting the diversity of tomato: the development of a phenotypically and genetically detailed germplasm collection
2020
[EN] A collection of 163 accessions, including Solanum pimpinellifolium, Solanum lycopersicum var. cerasiforme and Solanum lycopersicum var. lycopersicum, was selected to represent the genetic and morphological variability of tomato at its centers of origin and domestication: Andean regions of Peru and Ecuador and Mesoamerica. The collection is enriched with S. lycopersicum var. cerasiforme from the Amazonian region that has not been analyzed previously nor used extensively. The collection has been morphologically characterized showing diversity for fruit, flower and vegetative traits. Their genomes were sequenced in the Varitome project and are publicly available (solgenomics.net/projects/…
Diversity Assessment and DNA-Based Fingerprinting of Sicilian Hazelnut (Corylus avellana L.) Germplasm
2022
The characterization of plant genetic resources is a precondition for genetic improvement and germplasm management. The increasing use of molecular markers for DNA-based genotype signature is crucial for variety identification and traceability in the food supply chain. We collected 75 Sicilian hazelnut accessions from private and public field collections, including widely grown varieties from the Nebrodi Mountains in north east Sicily (Italy). The germplasm was fingerprinted through nine standardized microsatellites (SSR) for hazelnut identification to evaluate the genetic diversity of the collected accessions, validating SSR discrimination power. We identified cases of homonymy and synonym…
Use of seeds from local loquat ecotypes for rootstock production
2014
In Italy loquat (Eriobotrya japonica, Lindl) seedlings are commonly produced in nurseries as rootstocks for commercial loquat orchards. Seedling production is characterized by low germination percentage and a slow plant growth.The aim of this study was to evaluate local ecotypes seeds of loquat for seedlings production. Some ecotypes (Bianco dolce, BRT20, Claudia, Fiore, La Mantia and Marcenò) and international cultivars (Algerie, Golden Nugget, Magdal, Peluche and Tanaka) were compared. Loquat seeds of 11 different genotypes were collected from mature fruits in commercial orchards. Seeds were extracted and washed after separating from flesh. A pretreatment of 24 hr of seed soaking in a sol…
Morphological characteristics, microsatellite fingerprinting and determination of incompatibility genotypes of Sicilian sweet cherry cultivars
2007
Sicily has extensive germplasm of diploid sweet cherry (Prunus avium L.) that has not been well studied. In this investigation, 39 cherry accessions, selected from collections and farms, were analysed using molecular markers and characterised for various morphological and other agronomic characters such as flesh colour, fruit size, quality and, in some cases, ripening periods. Thirteen Simple Sequence Repeat (SSR) primer pairs, as well as two primer pairs for the incompatibility (S) locus, which amplified across the first intron of the S-RNase gene and across the intron of the SFB gene, were used in three multiplexed reactions to analyse the accessions. The number of alleles per SSR locus r…