Search results for "mcmc"
showing 10 items of 17 documents
Hierarchical log Gaussian Cox process for regeneration in uneven-aged forests
2021
We propose a hierarchical log Gaussian Cox process (LGCP) for point patterns, where a set of points x affects another set of points y but not vice versa. We use the model to investigate the effect of large trees to the locations of seedlings. In the model, every point in x has a parametric influence kernel or signal, which together form an influence field. Conditionally on the parameters, the influence field acts as a spatial covariate in the intensity of the model, and the intensity itself is a non-linear function of the parameters. Points outside the observation window may affect the influence field inside the window. We propose an edge correction to account for this missing data. The par…
Cox-prosessi pistekuvion hierarkkisena tilastollisena mallina
1998
Data Augmentation Approach in Bayesian Modelling of Presence-only Data
2011
Abstract Ecologists are interested in prediction of potential distribution of species in suitable areas, essential for planning conservation and management strategies. Unfortunately, often the only available information in such studies is the true presence of the species at few locations of the study area and the associated environmental covariates over the entire area, referred as presence-only data. We propose a Bayesian approach to estimate logistic linear regressions adapted to presence-only data through the introduction of a random approximation of the correction factor in the adjusted logistic model that allows us to overcome the need to know a priori the prevalence of the species.
Comparison of different uncertainty techniques in urban stormwater quantity and quality modelling
2011
Abstract Urban drainage models are important tools used by both practitioners and scientists in the field of stormwater management. These models are often conceptual and usually require calibration using local datasets. The quantification of the uncertainty associated with the models is a must, although it is rarely practiced. The International Working Group on Data and Models, which works under the IWA/IAHR Joint Committee on Urban Drainage, has been working on the development of a framework for defining and assessing uncertainties in the field of urban drainage modelling. A part of that work is the assessment and comparison of different techniques generally used in the uncertainty assessm…
Adaptive independent sticky MCMC algorithms
2018
In this work, we introduce a novel class of adaptive Monte Carlo methods, called adaptive independent sticky MCMC algorithms, for efficient sampling from a generic target probability density function (pdf). The new class of algorithms employs adaptive non-parametric proposal densities which become closer and closer to the target as the number of iterations increases. The proposal pdf is built using interpolation procedures based on a set of support points which is constructed iteratively based on previously drawn samples. The algorithm's efficiency is ensured by a test that controls the evolution of the set of support points. This extra stage controls the computational cost and the converge…
Bayesian inference for the extremal dependence
2016
A simple approach for modeling multivariate extremes is to consider the vector of component-wise maxima and their max-stable distributions. The extremal dependence can be inferred by estimating the angular measure or, alternatively, the Pickands dependence function. We propose a nonparametric Bayesian model that allows, in the bivariate case, the simultaneous estimation of both functional representations through the use of polynomials in the Bernstein form. The constraints required to provide a valid extremal dependence are addressed in a straightforward manner, by placing a prior on the coefficients of the Bernstein polynomials which gives probability one to the set of valid functions. The…
Statistical models and inference for spatial point patterns with intensity-dependent marks
2009
Importance sampling type estimators based on approximate marginal Markov chain Monte Carlo
2020
We consider importance sampling (IS) type weighted estimators based on Markov chain Monte Carlo (MCMC) targeting an approximate marginal of the target distribution. In the context of Bayesian latent variable models, the MCMC typically operates on the hyperparameters, and the subsequent weighting may be based on IS or sequential Monte Carlo (SMC), but allows for multilevel techniques as well. The IS approach provides a natural alternative to delayed acceptance (DA) pseudo-marginal/particle MCMC, and has many advantages over DA, including a straightforward parallelisation and additional flexibility in MCMC implementation. We detail minimal conditions which ensure strong consistency of the sug…
Yliopistotutkintojen määrän ennustaminen Bayes-mallilla
2017
Tämän tutkielman tarkoituksena on kehittää prediktiivinen malli, jolla ennustetaan Jyväskylän yliopiston matemaattis-luonnontieteellisessä tiedekunnassa lähivuosina suoritettavien luonnontieteiden kandidaatin ja filosofian maisterin tutkintojen lukumääriä. Mallin estimointiin käytettävä aineisto koostuu kolmesta osasta: vuosina 1996–2004 tiedekunnassa aloittaneet opiskelijat, vuosina 2005–2015 tiedekunnassa alemmasta korkeakoulututkinnosta aloittaneet opiskelijat ja vuosina 2005–2016 tiedekunnassa ylemmästä korkeakoulututkinnosta aloittaneet opiskelijat. Jokaiselle aineiston osalle sovitetaan omat toisistaan riippumattomat osamallit. Tutkintoennusteet saadaan ennustamalla aineistoon kuuluvi…