Search results for "oligo"

showing 10 items of 1298 documents

Gatekeeper of pluripotency: A common Oct4 transcriptional network operates in mouse eggs and embryonic stem cells

2011

Abstract Background Oct4 is a key factor of an expanded transcriptional network (Oct4-TN) that governs pluripotency and self-renewal in embryonic stem cells (ESCs) and in the inner cell mass from which ESCs are derived. A pending question is whether the establishment of the Oct4-TN initiates during oogenesis or after fertilisation. To this regard, recent evidence has shown that Oct4 controls a poorly known Oct4-TN central to the acquisition of the mouse egg developmental competence. The aim of this study was to investigate the identity and extension of this maternal Oct4-TN, as much as whether its presence is circumscribed to the egg or maintained beyond fertilisation. Results By comparing …

Octamer Transcription Factor-3lcsh:QH426-470lcsh:BiotechnologycellsGene regulatory networkDown-RegulationBiologyTranscriptomeMicelcsh:TP248.13-248.65GeneticsInner cell massAnimalsGene Regulatory NetworksEmbryonic Stem Cellsreproductive and urinary physiologyOligonucleotide Array Sequence AnalysisGeneticsGene Expression ProfilingfungiEmbryoEmbryonic stem cellGene expression profilinglcsh:GeneticsMultigene FamilyCancer cellembryonic structuresOocytesFemalebiological phenomena cell phenomena and immunityFunction and Dysfunction of the Nervous SystemOctamer Transcription Factor-3Research ArticleBiotechnologyBMC Genomics
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Síndrome de Cockayne: Informe de un caso: revisión de la literatura

2006

El Síndrome de Cockayne (CS) es un desorden genético con un patrón de herencia autosómico recesivo que fue descrito por primera vez en 1936 por Cockayne. Los pacientes con este síndrome presentan detención del crecimiento, talla baja, envejecimiento prematuro, anormalidades neurológicas, fotosensibilidad, retraso en la erupción de los dientes primarios, ausencia congénita de dientes permanentes, macrodoncia parcial, atrofia de los procesos alveolares y caries dental. Puede ser causado por mutación en dos genes, el CKN1 (ERCC8) y el ERCC6, localizados en los cromosomas 5 y 10 respectivamente; originando dos tipos: CS-A que tienen mutación en ERCC8 y CS-B con mutación en ERCC6, este último pr…

Odontología:CIENCIAS MÉDICAS [UNESCO]oligodonciaCiencias de la saludEnvejecimiento prematurogen CSBgen CKN1gen CSAsíndrome de Cockaynemacrodonciaretraso en el crecimiento y desarrolloUNESCO::CIENCIAS MÉDICASfotosensibilidadgen XPDgen XPBgen ERCC6gen XPGgen ERCC8
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On the ecology of littoral Oligochaeta of an oligotrophic Finnish lake

1982

In material sampled from 0.5–6 m on two sampling dates and three subareas the dominant Oligochaeta were Limnodrilus hoffmeisteri Claparede and Peloscolex ferox (Eisen), both composing more than 30% of the abundances of oligochaetes present. The numbers of Oligochaeta were mostly higher in August than in May. Regional differences could be found although the lake seems to be very homogenous. Temporal and vertical variations were detectable in separate subareas. The oligochaete biomass was maximal at 2 m depth. In soft bottom sediments the oligochaetes composed 15.9% of macrobenthos biomass and 12.2% of numbers, but on the stony bottom only 1.9% of numbers. The ratio of Oligochaeta/Chironomida…

Oligochaeta (plant)Biomass (ecology)Limnodrilus hoffmeisteribiologyEcologyMacrobenthosNicheLittoral zonebiology.organism_classificationChironomidaeEcology Evolution Behavior and SystematicsRegional differencesEcography
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Microvesicles shed by oligodendroglioma cells and rheumatoid synovial fibroblasts contain aggrecanase activity

2012

Membrane microvesicle shedding is an active process and occurs in viable cells with no signs of apoptosis or necrosis. We report here that microvesicles shed by oligodendroglioma cells contain an ‘aggrecanase’ activity, cleaving aggrecan at sites previously identified as targets for adamalysin metalloproteinases with disintegrin and thrombospondin domains (ADAMTSs). Degradation was inhibited by EDTA, the metalloproteinase inhibitor GM6001 and by tissue inhibitor of metalloproteinases (TIMP)-3, but not by TIMP-1 or TIMP-2. This inhibitor profile indicates that the shed microvesicles contain aggrecanolytic ADAMTS(s) or related TIMP-3-sensitive metalloproteinase(s). The oligodendroglioma cells…

OligodendrogliomaMembrane vesicleRA rheumatoid arthritisADAMTSMatrix metalloproteinaseCell Physiological PhenomenaAdamalysin03 medical and health sciences0302 clinical medicineSettore BIO/10 - BiochimicaEndopeptidasesHumansAggrecansADAM adamalysinADAMTS a disintegrin and metalloproteinase with thrombospondin motifsMolecular BiologyMetalloproteinase030304 developmental biologyAggrecanaseTissue Inhibitor of Metalloproteinase-3MEF mouse embryonic fibroblasts0303 health sciencesMetalloproteinaseChemistryBrief ReportMVs microvesiclesADAMTSMicrovesicleCytoplasmic VesiclesDipeptidesFibroblastsMolecular biologyRecombinant ProteinsMicrovesiclesECM extracellular matrixMembrane vesiclesCell biologyEnzyme ActivationMMP matrix metalloproteinaseADAM ProteinsADAMTS4030220 oncology & carcinogenesisProteolysisADAMTS5 ProteinRheumatic FeverTIMP tissue inhibitor of metalloproteinaseAggrecan
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Energy-Linked Reactions Catalyzed by the Purified ATPase Complex (F0F1) from Rhodospirillum rubrum Chromatophores

1980

1. The isolation of the F0F1-ATPase complex from Rhodospirillum rubrum chromatophores by the use of taurodeoxycholate is described. 2. The enzyme preparation contains about 12 polypeptides; five are subunits of the F1 moiety. 3. The ATPase activity of the purified enzyme is dependent on the addition of phospholipids. 4. Km-vales for Mg2+-ATP and Ca2+-ATP are similar to the values obtained for the membrane-bound enzyme. 5. The F0F1-ATPase complex is more than 70% inhibited by oligomycin and N,N′-dicyclohexyl-carbodiimide. 6. The F0F1-ATPase complex was integrated into liposomes. The reconstituted proteoliposomes catalyzed energy transduction as shown by ATP-dependent quenching of acridine dy…

OligomycinMacromolecular SubstancesBiologyRhodospirillum rubrumBiochemistryFluorescenceMembrane Lipidschemistry.chemical_compoundAdenosine TriphosphateMoietyAdenosine Triphosphataseschemistry.chemical_classificationLiposomeQuenching (fluorescence)Cell-Free SystemUncoupling AgentsATPase complexRhodospirillum rubrumMembrane ProteinsBacterial Chromatophoresbiology.organism_classificationFluorescenceMolecular WeightEnzymeSolubilitychemistryBiochemistryLiposomesEuropean Journal of Biochemistry
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Pump and Displacement Currents of Reconstituted ATP Synthase on Black Lipid Membranes

1988

Purified ATP synthase (F0F1) from Rhodospirillum rubrum was reconstituted into asolectine liposomes which were then adsorbed to a planar lipid bilayer. After the addition of an inactive photolabile ATP derivative (caged ATP), ATP was released after illumination with u.v.-light, which led to a transient current in the system. The transient photocurrent indicates that the vesicles and the planar membrane are capacitatively coupled. Stationary pump currents were obtained after addition of protonophores. These currents are specifically inhibited by oligomycin and stimulated threefold by inorganic phosphate (Pi). In analogy oligomycin sensitive pump currents in the reverse direction coupled to n…

OligomycinbiologyATP synthaseChemistryChemiosmosisStereochemistryVesicleRhodospirillum rubrumSynthetic membraneBacteriorhodopsinbiology.organism_classificationchemistry.chemical_compoundbiology.proteinBiophysicsATP synthase alpha/beta subunits
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Nanomaterial-based cocaine aptasensors.

2015

Up to now, many different methods have been developed for detection of cocaine, but most of these methods are usually time-consuming, tedious and require special or expensive equipment. Therefore, the development of simple, sensitive and rapid detection methods is necessary. In the last decade, aptamers have been used as a new biosensor platform for detection of cocaine in different samples. Aptamers are artificial single-stranded DNA or RNA oligonucleotides capable of binding to specific molecular targets with high affinity and if integrated to nanomaterials, it may lead in precise methods for cocaine detection in the common laboratories. In this review, recent advances and applications of…

OligonucleotideComputer scienceAptamerBiomedical EngineeringBiophysicsDNA Single-StrandedNanotechnologyGeneral MedicineBiosensing TechniquesElectrochemical TechniquesAptamers NucleotideRapid detectionQuantitative determinationFluorescenceCocaineNanosensorElectrochemistryMolecular targetsHumansColorimetryBiosensorBiotechnologyBiosensorsbioelectronics
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Modeling hole transfer in DNA: Low-lying excited states of oxidized cytosine homodimer and cytosine–adenine heterodimer

2008

Abstract Charge transport in DNA strands has been studied by characterizing on theoretical grounds the lowest doublet states of the oxidized cytosine homodimer (CC + ) and adenine–cytosine heterodimer (CA + ) along the intermolecular separation of the monomers. The high-level quantum-chemical ab initio CASPT2 method and accurate one-electron basis sets have been employed. Both cationic species are found to be bound with comparable binding energies as those of neutral CC and reduced CC − . The results suggest that charge transport in DNA and the distinct photophysical attributes related to the polymer can be described within the framework of a unified theory. A cooperative micro-hopping mech…

OligonucleotideIntermolecular forceBinding energyAb initioGeneral Physics and AstronomyNucleobasechemistry.chemical_compoundCrystallographychemistryComputational chemistryExcited statePhysical and Theoretical ChemistryCytosineDNAChemical Physics
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Mechanical and electroconductive properties of spatially distributed double stranded DNA arrays on Au (111)

2008

Abstract Conductive AFM was used to investigate electroconductivity through 10 nm long double stranded DNA molecules in mixed monolayers of thioalkylated-DNA and mercaptohexanol (MCH) on Au (111) surface. The distribution of DNA molecules on the surface was analyzed by tapping mode AFM. Measurements performed in lift mode confirmed that the DNA molecules protrude from the surface rather than lie horizontally adsorbed on the interface. The optimal conductivity measurement time, which is shorter than the mechanical relaxation time of oligonucleotide duplexes, was determined. It was concluded that oligonucleotide duplexes have a resistance of the order of ~ 2 Ω ⁎ m at 1 V.

OligonucleotideMetals and AlloysAnalytical chemistrySelf-assembled monolayerSurfaces and InterfacesConductive atomic force microscopyConductivitySurfaces Coatings and FilmsElectronic Optical and Magnetic MaterialsCrystallographychemistry.chemical_compoundAdsorptionchemistryMonolayerMaterials ChemistryMoleculeDNAThin Solid Films
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Functional Studies of Regulatory Genes in the Sea Urchin Embryo

2008

Sea urchin embryos are characterized by an extremely simple mode of development, rapid cleavage, high transparency, and well-defined cell lineage. Although they are not suitable for genetic studies, other approaches are successfully used to unravel mechanisms and molecules involved in cell fate specification and morphogenesis. Microinjection is the elective method to study gene function in sea urchin embryos. It is used to deliver precise amounts of DNA, RNA, oligonucleotides, peptides, or antibodies into the eggs or even into blastomeres. Here we describe microinjection as it is currently applied in our laboratory and show how it has been used in gene perturbation analyses and dissection o…

OligonucleotideMorphogenesisRNABlastomereAnatomyBiologyCell biologychemistry.chemical_compoundchemistryembryonic structuresMicroinjectionGeneDNARegulator gene
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