Search results for "sequence"
showing 10 items of 4987 documents
Prevalence and genetic diversity of Aichi virus strains in stool samples from community and hospitalized patients.
2008
ABSTRACT Aichi virus has been proposed as a causative agent of gastroenteritis. A total of 457 stool specimens from children hospitalized with acute diarrhea and 566 stool specimens from adults and children involved in 110 gastroenteritis outbreaks were screened for the presence of Aichi virus by reverse transcription-PCR (RT-PCR) amplification of the genomic region of the 3C and 3D (3CD) nonstructural proteins. Our results show a low incidence of Aichi virus in pediatric samples and the existence of mixed infections with other microbiological agents in some cases. From the outbreak survey, it appears that the presence of Aichi virus is an indicator of mixed infections causing gastroenterit…
Impact of histidine spacing on modified polyhistidine tag – Metal ion interactions
2018
Abstract Histidine rich sequences are chosen both by nature and by molecular biologists due to their high affinity towards metal ions. In this work, we examine the affinity and binding modes of Cu 2+ , Ni 2+ and Zn 2+ towards two histidine tags, the common His 6 -tag (Ac-HHHHHH-NH 2 ) and its modified sequence, which also contains six histidines, but separated with two alanine residues (Ac-HAAHAAHAAHAAHAAHAA-NH 2 ). The spatial separation of histidines has an important impact on its coordination properties. Cu 2+ and Ni 2+ complexes with Ac-HHHHHH-NH 2 are more stable than those with Ac-HAAHAAHAAHAAHAAHAA-NH 2 ; the contrary is observed for Zn 2+ . In a narrow range of pH, Cu 2+ -Ac-HHHHHH-…
Assessment of determinants affecting the dual topology of hepadnaviral large envelope proteins
2004
For functional diversity, the large (L) envelope protein of hepatitis B virus (HBV) acquires a dual transmembrane topology via co-translational membrane integration of the S region and partial post-translational translocation of the preS subdomain. Because each process requires the second transmembrane segment (TM2), we explored the action of this determinant by using protease protection analysis of mutant L proteins. We demonstrated that neither the disruption of a leucine zipper-like motif by multiple alanine substitutions nor the flanking charges of TM2 affected the topological reorientation of L. The dispensability of both putative subunit interaction modules argues against a link betwe…
Determinants of Substrate Specificity in the NS3 Serine Proteinase of the Hepatitis C Virus
1997
AbstractProcessing of the nonstructural polyprotein of the hepatitis C virus (HCV) requires the serine-type proteinase located in the amino-terminal domain of NS3. To identify residues within NS3 determining substrate specificity, a mutation analysis was performed. Using sequence alignments and three-dimensional structure predictions, amino acids assumed to be important for specificity were replaced and the enzymes were tested in an intracellulartrans-processing assay for their effects on cleavage of an NS4B-5B substrate. For some of the substitutions at positions 133, 134, 135, 136, 138, 152, 155, 157, and 169, slightly reduced processing efficiencies were observed but in no case was the s…
One-pot synthesis of polysubstituted indolizines by an addition/cycloaromatization sequence.
2013
Indolizines carrying various substituents in positions 5-8 were obtained from readily available 2-(1H-pyrrol-1-yl)nitriles and α,β-unsaturated ketones or aldehydes in a one-pot procedure. Michael addition of the deprotonated aminonitriles to the acceptors followed by acid-catalyzed electrophilic cyclization produces 5,6-dihydroindolizine-5-carbonitriles. From these stable intermediates, substituted indolizines were obtained via base-induced dehydrocyanation.
Conectores y secuencias didácticas en primer ciclo de educación primaria
2017
El punto de partida con el que iniciamos este artículo relaciona la enseñanza de elementos gramaticales, como los conectores, con la producción textual de escolares de segundo curso de Educación Primaria. En la investigación, que se lleva a cabo en aula, se elige como dispositivo una secuencia didáctica inspirada en el modelo de la escuela de Ginebra. La mediación elegida demuestra que resulta posible y eficaz introducir estos saberes gramaticales desde el inicio de la escolarización y que estos elementos ayudan, junto con el resto de la intervención, a mejorar los textos de los niños. Para ello aportamos el análisis de la producción inicial y final de un alumno y los resultados obtenidos d…
Free sequences and the tightness of pseudoradial spaces
2019
Let F(X) be the supremum of cardinalities of free sequences in X. We prove that the radial character of every Lindelof Hausdorff almost radial space X and the set-tightness of every Lindelof Hausdorff space are always bounded above by F(X). We then improve a result of Dow, Juhasz, Soukup, Szentmiklossy and Weiss by proving that if X is a Lindelof Hausdorff space, and $$X_\delta $$ denotes the $$G_\delta $$ topology on X then $$t(X_\delta ) \le 2^{t(X)}$$ . Finally, we exploit this to prove that if X is a Lindelof Hausdorff pseudoradial space then $$F(X_\delta ) \le 2^{F(X)}$$ .
About Quotient Orders and Ordering Sequences
2017
Summary In preparation for the formalization in Mizar [4] of lotteries as given in [14], this article closes some gaps in the Mizar Mathematical Library (MML) regarding relational structures. The quotient order is introduced by the equivalence relation identifying two elements x, y of a preorder as equivalent if x ⩽ y and y ⩽ x. This concept is known (see e.g. chapter 5 of [19]) and was first introduced into the MML in [13] and that work is incorporated here. Furthermore given a set A, partition D of A and a finite-support function f : A → ℝ, a function Σ f : D → ℝ, Σ f (X)= ∑ x∈X f(x) can be defined as some kind of natural “restriction” from f to D. The first main result of this article ca…
Examples of Indexed PIP-Spaces
2009
This chapter is devoted to a detailed analysis of various concrete examples of pip-spaces. We will explore sequence spaces, spaces of measurable functions, and spaces of analytic functions. Some cases have already been presented in Chapters 1 and 2. We will of course not repeat these discussions, except very briefly. In addition, various functional spaces are of great interest in signal processing (amalgam spaces, modulation spaces, Besov spaces, coorbit spaces). These will be studied systematically in a separate chapter (Chapter 8).
Sequential formula translation
1983
The syntax of an algorithmic language such as ALGOL is conveniently described as a sequence of states indicated by an element called cellar. Transitions are controlled by admissible state- s ymbol pairs which may be represented by a transition matrix. This description of syntax furnishes at the same time an extremely simple rule for translating into machine programs statements in the algorithmic language. Sequential treatment, however, is not feasible in the case of certain optimizing processes such as recursive address calculation.