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p24 Family Proteins Are Involved in Transport to the Plasma Membrane of GPI-Anchored Proteins in Plants

2020

p24 proteins are a family of type-I membrane proteins that cycle between the endoplasmic reticulum (ER) and the Golgi apparatus via Coat Protein I (COPI)- and COPII-coated vesicles. These proteins have been proposed to function as cargo receptors, but the identity of putative cargos in plants is still elusive. We previously generated an Arabidopsis (Arabidopsis thaliana) quadruple loss-of-function mutant affecting p24 genes from the δ-1 subclass of the p24 delta subfamily (p24δ3δ4δ5δ6 mutant). This mutant also had reduced protein levels of other p24 family proteins and was found to be sensitive to salt stress. Here, we used this mutant to test the possible involvement of p24 proteins in the…

Relationship between seed morphological traits and ash and mineral distribution along the kernel using debranning in durum wheats from different geog…

2020

Debranning was applied to durum wheat to the study the relationship between kernel shape and size, and ash and mineral distribution having implications for semolina yield. To this aim four durum wheat genotypes carried out over three environments were selected to determine the morphological and yield traits as well as the distribution along the kernel of the ash, macro- (Na, K, P, Ca, and Mg), and micro-elements (Mn, Fe, Cu, Zn, and Mo). A descendent ash gradient within the kernel reflects the decreases in the minerals that occurred during debranning. Perciasacchi with high seed weight (TKW) and greater thickness followed by Cappelli showed a more uniform distribution of ash content along t…

Einstein and Twentieth-Century Politics: ‘A Salutary Moral Influence’

2017

Detection of Allee effects in marine fishes: analytical biases generated by data availability and model selection

2017

The demographic Allee effect, or depensation, implies positive association between per capita population growth rate and population size at low abundances, thereby lowering growth ability of sparse populations. This can have far-reaching consequences on population recovery ability and colonization success. In the context of marine fishes, there is a widespread perception that Allee effects are rare or non-existent. However, studies that have failed to detect Allee effects in marine fishes have suffered from several fundamental methodological and data limitations. In the present study, we challenge the prevailing perception about the rarity of Allee effects by analysing nine populations of …

A molecular-based identification resource for the arthropods of Finland

2022

Publisher Copyright: © 2021 The Authors. Molecular Ecology Resources published by John Wiley & Sons Ltd. To associate specimens identified by molecular characters to other biological knowledge, we need reference sequences annotated by Linnaean taxonomy. In this study, we (1) report the creation of a comprehensive reference library of DNA barcodes for the arthropods of an entire country (Finland), (2) publish this library, and (3) deliver a new identification tool for insects and spiders, as based on this resource. The reference library contains mtDNA COI barcodes for 11,275 (43%) of 26,437 arthropod species known from Finland, including 10,811 (45%) of 23,956 insect species. To quantify the…

Hierarchical log Gaussian Cox process for regeneration in uneven-aged forests

2021

We propose a hierarchical log Gaussian Cox process (LGCP) for point patterns, where a set of points x affects another set of points y but not vice versa. We use the model to investigate the effect of large trees to the locations of seedlings. In the model, every point in x has a parametric influence kernel or signal, which together form an influence field. Conditionally on the parameters, the influence field acts as a spatial covariate in the intensity of the model, and the intensity itself is a non-linear function of the parameters. Points outside the observation window may affect the influence field inside the window. We propose an edge correction to account for this missing data. The par…

The effect of fish life-history structures on the topologies of aquatic food webs

2021

Biological organisms can vastly change their ecological functionality due to changes in body size and diet across their life. Consequently, it has been increasingly recognized that to attain sufficient biological realism, food webs may need to include life-history structures. The objective of the work is to study theoretically whether and how the inclusion of life-history structures affects the food web topology. Topological research was done by applying network theory metrics for three different food web types with two different sizes that were generated by using the niche-model. The dynamical modeling was performed by using an allometric trophic network modeling approach. The different ty…

The mechanistic basis of demographic Allee effects: The search for mates

2017

In Focus: Berec, L., Kremer, A.M., Bernhauverova, V., & Drake, J.M. (2017). Density-dependent selection on mate-finding Allee effects. Journal of Animal Ecology, 87, 24-35. https://doi.org/10.1111/1365-2656.12662 In Focus: Shaw, A.K., Kokko, H., & Neubert, M.G. (2017). Details of mate finding drive dynamics of sex structured invasions. Journal of Animal Ecology, 87, 36-46. https://doi.org/10.1111/1365-2656.12658 Lowered population growth ability at low abundances is called the demographic Allee effect. The difficulty of finding mates in a sparse population is the best documented pathway through which a demographic Allee effect might arise. The articles in focus here aim to establish the mec…

Atlantic cod recovery from the Allee effect zone : contrasting ecological and evolutionary rescue

2020

The ability of a population to recover from disturbances is fundamental for its persistence. Impaired population recovery might be associated with a demographic Allee effect. Immigration from adjacent populations could accelerate the recovery not only by promoting population growth beyond the Allee effect threshold but also by bringing in advantageous genotypes. We explore the nature and role of ecological and evolutionary rescue in an Atlantic cod (Gadus morhua Gadidae) population fished below its Allee effect threshold. We utilize an eco-evolutionary model and simulate scenarios, where the target population evolves in response to selective fishing and sample immigrants from (a) a source p…

Temporary Allee effects among non‐stationary recruitment dynamics in depleted gadid and flatfish populations

2021

Many considerably declined fish populations have not fully recovered despite reductions in fishing pressure. One of the possible causes of impaired recovery is the (demographic) Allee effect. To investigate whether low-abundance recruitment dynamics can switch between compensation and depensation, the latter implying the presence of the Allee effect, we analysed the stock–recruitment time series of 17 depleted cod-type and flatfish populations using a Bayesian change point model. The recruitment dynamics were represented with the sigmoidal Beverton–Holt and the Saila–Lorda stock–recruitment models, allowing the parameters of the models to shift at a priori unknown change points. Our synthes…