Search results for "ta114"
showing 10 items of 1144 documents
Gold/Isophorone Interaction Driven by Keto/Enol Tautomerization
2016
The binding behavior of isophorone (C9H14O) to Au adatoms and clusters deposited on MgO/Ag(001) thin films is investigated by scanning tunneling microscopy (STM) and density functional theory (DFT). The STM data reveal the formation of various metal/organic complexes, ranging from Au1/isophorone pairs to larger Au aggregates with molecules bound to their perimeter. DFT calculations find the energetically preferred keto-isophorone to be unreactive toward gold, while the enol-tautomer readily binds to Au monomers and clusters. The interaction is governed by electrostatic forces between the hydroxyl group of the enol and negative excess charges residing on the ad-gold. The activation barrier b…
Controlled time integration for the numerical simulation of meteor radar reflections
2016
We model meteoroids entering the Earth[U+05F3]s atmosphere as objects surrounded by non-magnetized plasma, and consider efficient numerical simulation of radar reflections from meteors in the time domain. Instead of the widely used finite difference time domain method (FDTD), we use more generalized finite differences by applying the discrete exterior calculus (DEC) and non-uniform leapfrog-style time discretization. The computational domain is presented by convex polyhedral elements. The convergence of the time integration is accelerated by the exact controllability method. The numerical experiments show that our code is efficiently parallelized. The DEC approach is compared to the volume …
Individual Tree Detection and Classification with UAV-Based Photogrammetric Point Clouds and Hyperspectral Imaging
2017
Made available in DSpace on 2018-12-11T17:11:58Z (GMT). No. of bitstreams: 0 Previous issue date: 2017-03-01 Suomen Akatemia Small unmanned aerial vehicle (UAV) based remote sensing is a rapidly evolving technology. Novel sensors and methods are entering the market, offering completely new possibilities to carry out remote sensing tasks. Three-dimensional (3D) hyperspectral remote sensing is a novel and powerful technology that has recently become available to small UAVs. This study investigated the performance of UAV-based photogrammetry and hyperspectral imaging in individual tree detection and tree species classification in boreal forests. Eleven test sites with 4151 reference trees repr…
Ray optics for absorbing particles with application to ice crystals at near-infrared wavelengths
2018
Abstract Light scattering by particles large compared to the wavelength of incident light is traditionally solved using ray optics which considers absorption inside the particle approximately, along the ray paths. To study the effects rising from this simplification, we have updated the ray-optics code SIRIS to take into account the propagation of light as inhomogeneous plane waves inside an absorbing particle. We investigate the impact of this correction on traditional ray-optics computations in the example case of light scattering by ice crystals through the extended near-infrared (NIR) wavelength regime. In this spectral range, ice changes from nearly transparent to opaque, and therefore…
Alder pollen in Finland ripens after a short exposure to warm days in early spring, showing biennial variation in the onset of pollen ripening
2017
Abstract We developed a temperature sum model to predict the daily pollen release of alder, based on pollen data collected with pollen traps at seven locations in Finland over the years 2000–2014. We estimated the model parameters by minimizing the sum of squared errors (SSE) of the model, with weights that put more weight on binary recognition of daily presence or absence of pollen. The model results suggest that alder pollen ripens after a couple of warm days in February, while the whole pollen release period typically takes up to 4 weeks. We tested the model residuals against air humidity, precipitation and wind speed, but adding these meteorological features did not improve the model pr…
Gauge theory of the long-range proximity effect and spontaneous currents in superconducting heterostructures with strong ferromagnets
2017
We present the generalized quasiclassical theory of the long-range superconducting proximity effect in heterostructures with strong ferromagnets, where the exchange splitting is of the order of Fermi energy. In the ferromagnet the propagation of equal-spin Cooper pairs residing on the spin-split Fermi surfaces is shown to be governed by the spin-dependent Abelian gauge field which results either from the spin-orbital coupling or from the magnetic texture. This additional gauge field enters into the quasiclassical equations in superposition with the usual electromagnetic vector potential and results in the generation of spontaneous superconducting currents and phase shifts in various geometr…
Embryonic Growth of Face-Center-Cubic Silver Nanoclusters Shaped in Nearly Perfect Half-Cubes and Cubes.
2016
Demonstrated herein are the preparation and crystallographic characterization of the family of fcc silver nanoclusters from Nichol’s cube to Rubik’s cube and beyond via ligand-control (thiolates and phosphines in this case). The basic building block is our previously reported fcc cluster [Ag14(SPhF2)12(PPh3)8] (1). The metal frameworks of [Ag38(SPhF2)26(PR′3)8] (22) and [Ag63(SPhF2)36(PR′3)8]+ (23), where HSPhF2 = 3,4-difluorothiophenol and R′ = alkyl/aryl, are composed of 2 × 2 = 4 and 2 × 2 × 2 = 8 metal cubes of 1, respectively. All serial clusters share similar surface structural features. The thiolate ligands cap the six faces and the 12 edges of the cube (or half cube) while the phosp…
Diffusion through thin membranes: Modeling across scales
2016
From macroscopic to microscopic scales it is demonstrated that diffusion through membranes can be modeled using specific boundary conditions across them. The membranes are here considered thin in comparison to the overall size of the system. In a macroscopic scale the membrane is introduced as a transmission boundary condition, which enables an effective modeling of systems that involve multiple scales. In a mesoscopic scale, a numerical lattice-Boltzmann scheme with a partial-bounceback condition at the membrane is proposed and analyzed. It is shown that this mesoscopic approach provides a consistent approximation of the transmission boundary condition. Furthermore, analysis of the mesosco…
On the (un)coupling of the chromophore, tongue interactions, and overall conformation in a bacterial phytochrome
2018
Phytochromes are photoreceptors in plants, fungi, and various microorganisms and cycle between metastable red light-absorbing (Pr) and far-red light-absorbing (Pfr) states. Their light responses are thought to follow a conserved structural mechanism that is triggered by isomerization of the chromophore. Downstream structural changes involve refolding of the so-called tongue extension of the phytochrome-specific GAF-related (PHY) domain of the photoreceptor. The tongue is connected to the chromophore by conserved DIP and PRXSF motifs and a conserved tyrosine, but the role of these residues in signal transduction is not clear. Here, we examine the tongue interactions and their interplay with …
Soft X-Ray Tomography Reveals Gradual Chromatin Compaction and Reorganization during Neurogenesis In Vivo
2016
Summary - The realization that nuclear distribution of DNA, RNA, and proteins differs between cell types and developmental stages suggests that nuclear organization serves regulatory functions. Understanding the logic of nuclear architecture and how it contributes to differentiation and cell fate commitment remains challenging. Here, we use soft X-ray tomography (SXT) to image chromatin organization, distribution, and biophysical properties during neurogenesis in vivo. Our analyses reveal that chromatin with similar biophysical properties forms an elaborate connected network throughout the entire nucleus. Although this interconnectivity is present in every developmental stage, differentiati…