0000000000012706

AUTHOR

Vicente Pallás

0000-0003-4954-989x

showing 13 related works from this author

The coat protein of prunus necrotic ringspot virus specifically binds to and regulates the conformation of its genomic RNA

2003

AbstractBinding of coat protein (CP) to the 3′ nontranslated region (3′-NTR) of viral RNAs is a crucial requirement to establish the infection of Alfamo- and Ilarviruses. In vitro binding properties of the Prunus necrotic ringspot ilarvirus (PNRSV) CP to the 3′-NTR of its genomic RNA using purified E. coli- expressed CP and different synthetic peptides corresponding to a 26-residue sequence near the N-terminus were investigated by electrophoretic mobility shift assays. PNRSV CP bound to, at least, three different sites existing on the 3′-NTR. Moreover, the N-terminal region between amino acid residues 25 to 50 of the protein could function as an independent RNA-binding domain. Single exchan…

Molecular Sequence DataElectrophoretic Mobility Shift AssayPlasma protein bindingBiologyIlarvirusProtein structureVirologyElectrophoretic mobility shift assayMagnesiumAmino Acid SequencePeptide sequence3' Untranslated RegionsIlarvirusBase SequenceCircular DichroismRNA ConformationRNAbiology.organism_classificationMolecular biologyProtein Structure TertiaryBiochemistryPrunus necrotic ringspot virusNucleic Acid ConformationRNA ViralCapsid ProteinsPrunusProtein BindingVirology
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Highly efficient construction of infectious viroid-derived clones

2019

[Background] Viroid research generally relies on infectious cDNA clones that consist of dimers of the entire viroid sequence. At present, those dimers are generated by self-ligation of monomeric cDNA, a strategy that presents several disadvantages: (i) low efficiency, (ii) it is a non-oriented reaction requiring tedious screenings and (iii) additional steps are required for cloning into a binary vector for agroinfiltration or for in vitro RNA production.

0106 biological sciences0301 basic medicineAgroinfiltrationIIs enzymesViroidvirusesPlant ScienceComputational biologylcsh:Plant cultureBiology01 natural sciences03 medical and health sciencesAgro-infiltrationComplementary DNAGeneticsLethal allelelcsh:SB1-1110Vector (molecular biology)Dimerslcsh:QH301-705.5CloningViroidMethodologyRNAbiology.organism_classificationRestriction enzyme030104 developmental biologylcsh:Biology (General)010606 plant biology & botanyBiotechnologyCloning
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Membrane insertion and topology of the p7B movement protein of Melon Necrotic Spot Virus (MNSV)

2007

AbstractCell-to-cell movement of the Melon Necrotic Spot Virus (MNSV) is controlled by two small proteins working in trans, an RNA-binding protein (p7A) and an integral membrane protein (p7B) separated by an amber stop codon. p7B contains a single hydrophobic region. Membrane integration of this region was observed when inserted into model proteins in the presence of microsomal membranes. Furthermore, we explored the topology and targeting mechanisms of full-length p7B. Here we present evidence that p7B integrates in vitro into the ER membrane cotranslationally and with an Nt-cytoplasmic/Ct-luminal orientation. The observed topology was monitored in vivo by fusing GFP to the Ct of p7B, enab…

Green Fluorescent ProteinsPlant virusBiologyTopologyEndoplasmic ReticulumGreen fluorescent proteinViral ProteinsVirologyMovement proteinIntegral membrane proteinMelon necrotic spot virusEndoplasmic reticulumCarmovirusProteïnes de membranaMembrane Proteinsbiology.organism_classificationMembrane integrationMembrane protein topologyVirusPlant Viral Movement ProteinsMovement proteinsCucurbitaceaeMembraneMembrane proteinCarmovirusMNSVVirology
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Symptom severity, infection progression and plant responses in solanum plants caused by three pospiviroids vary with the inoculation procedure

2021

This article belongs to the Section Molecular Plant Sciences.

0106 biological sciences0301 basic medicineViroidvirusesPospiviroidaeCEVd01 natural sciencesRibosome18S ribosomal RNAAgro-infiltrationSolanum lycopersicumBiology (General)Spectroscopyfood and beveragesGeneral MedicinePSTVdTranscriptRibosomeViroidsComputer Science Applications02.- Poner fin al hambre conseguir la seguridad alimentaria y una mejor nutrición y promover la agricultura sostenibleChemistryRNA ViralPlasmidsQH301-705.5PospiviroidaeBiologyEggplantStressArticleCatalysisTomatoMicrobiologyInorganic Chemistry03 medical and health sciencesBIOQUIMICA Y BIOLOGIA MOLECULARPhysical and Theoretical ChemistryQD1-999Molecular BiologyPotato spindle tuber viroidPlant DiseasesInoculationOrganic ChemistryfungiRibosomal RNAbiology.organism_classification030104 developmental biologyTCDVdSolanumRibosomes010606 plant biology & botany
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Mutational analysis of the RNA-binding domain of the Prunus necrotic ringspot virus (PNRSV) movement protein reveals its requirement for cell-to-cell…

2005

AbstractThe movement protein (MP) of Prunus necrotic ringspot virus (PNRSV) is required for cell-to-cell movement. MP subcellular localization studies using a GFP fusion protein revealed highly punctate structures between neighboring cells, believed to represent plasmodesmata. Deletion of the RNA-binding domain (RBD) of PNRSV MP abolishes the cell-to-cell movement. A mutational analysis on this RBD was performed in order to identify in vivo the features that govern viral transport. Loss of positive charges prevented the cell-to-cell movement even though all mutants showed a similar accumulation level in protoplasts to those observed with the wild-type (wt) MP. Synthetic peptides representin…

MutantMolecular Sequence DataPlasmodesmaBiologyCircular dichroismIlarvirusGFPViral ProteinsVirologyMovement proteinTobaccoAmino Acid SequenceMovement proteinRNA binding domainProtein secondary structureProtoplastsRNABiological Transportbiology.organism_classificationSubcellular localizationSubcellular locationMolecular biologyVirusProtein Structure TertiaryPlant LeavesPlant Viral Movement ProteinsPrunus necrotic ringspot virusRNA ViralCell-to-cell movementPeptidesProteïnesPrunus necrotic ringspot virusBinding domainVirology
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Structural Properties of Carnation Mottle Virus p7 Movement Protein and Its RNA-binding Domain

2001

Plant viral movement proteins (MPs) participate actively in the intra- and intercellular movement of RNA plant viruses to such an extent that MP dysfunction impairs viral infection. However, the molecular mechanism(s) of their interaction with cognate nucleic acids are not well understood, partly due to the lack of structural information. In this work, a protein dissection approach was used to gain information on the structural and RNA-binding properties of this class of proteins, as exemplified by the 61-amino acid residue p7 MP from carnation mottle virus (CarMV). Circular dichroism spectroscopy showed that CarMV p7 is an alpha/beta RNA-binding soluble protein. Using synthetic peptides de…

chemistry.chemical_classificationBinding SitesCarlavirusC-terminusMolecular Sequence DataRNA-Binding ProteinsRNACell BiologyBiologyAlanine scanningBiochemistryProtein Structure SecondaryAmino acidViral ProteinsProtein structureBiochemistrychemistryRNAAmino Acid SequenceBinding siteMolecular BiologyPeptide sequenceBinding domainJournal of Biological Chemistry
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Hexanoic Acid Treatment Prevents Systemic MNSV Movement in Cucumis melo Plants by Priming Callose Deposition Correlating SA and OPDA Accumulation

2017

Unlike fungal and bacterial diseases, no direct method is available to control viral diseases. The use of resistance-inducing compounds can be an alternative strategy for plant viruses. Here we studied the basal response of melon to Melon necrotic spot virus (MNSV) and demonstrated the efficacy of hexanoic acid (Hx) priming, which prevents the virus from systemically spreading. We analysed callose deposition and the hormonal profile and gene expression at the whole plant level. This allowed us to determine hormonal homeostasis in the melon roots, cotyledons, hypocotyls, stems and leaves involved in basal and hexanoic acid-induced resistance (Hx-IR) to MNSV. Our data indicate important roles…

0106 biological sciences0301 basic medicineMelonsalicylic acidPlant Sciencelcsh:Plant culture01 natural sciencesHypocotylMicrobiologyOPDA03 medical and health scienceschemistry.chemical_compoundCucumis meloPlant viruslcsh:SB1-1110Original ResearchHexanoic acidPriming by natural compoundsbiologyMelon necrotic spot virusCallosefood and beveragesSalicylic acidbiology.organism_classificationpriming by natural compounds030104 developmental biologychemistryBiochemistryMNSVhexanoic acidHexanoic acidCucumisSalicylic acid010606 plant biology & botany
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In vivo detection, RNA-binding properties and characterization of the RNA-binding domain of the p7 putative movement protein from carnation mottle ca…

1999

Biochemical and structural characterization studies on the p7 putative movement protein from a Spanish isolate of carnation mottle carmovirus (CarMV) have been conducted. The CarMV p7 gene was fused to a sequence coding for a six-histidine tag and expressed in bacteria, allowing the purification of CarMV p7 and the production of a specific antiserum. This antiserum led to the immunological identification of CarMV p7 in infected leaf tissue from the experimental host Chenopodium quinoa. Putative nucleic acid-binding properties of the CarMV p7 have been explored and demonstrated with both electrophoretic mobility shift and RNA-protein blot in vitro assays using digoxigenin-labeled riboprobes.…

Binding SitesCarmovirusRecombinant Fusion ProteinsMolecular Sequence DataCooperative bindingRNARNA-Binding ProteinsBiologybiology.organism_classificationMolecular biologyPlant Viral Movement ProteinsViral ProteinsBiochemistryVirologyNucleic acidEscherichia coliCarmovirusAmino Acid SequenceMovement proteinPeptide sequenceGeneBinding domainVirology
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The Tobacco mosaic virus movement protein associates with but does not integrate into biological membranes

2014

Plant positive-strand RNA viruses require association with plant cell endomembranes for viral translation and replication, as well as for intra- and intercellular movement of the viral progeny. The membrane association and RNA binding of the Tobacco mosaic virus (TMV) movement protein (MP) are vital for orchestrating the macromolecular network required for virus movement. A previously proposed topological model suggests that TMV MP is an integral membrane protein with two putative -helical transmembrane (TM) segments. Here we tested this model using an experimental system that measured the efficiency with which natural polypeptide segments were inserted into the ER membrane under conditions…

Recombinant Fusion ProteinsvirusesMolecular Sequence DataImmunologyGene ExpressionMicrobiologiaBiologyEndoplasmic ReticulumMicrobiologyCell membraneGenes ReporterPlant CellsVirologymedicineTobacco mosaic virusAmino Acid SequenceMovement proteinIntegral membrane proteinStructure and AssemblyCell MembraneViral translationfungifood and beveragesBiological membraneVirologyTransmembrane proteinTransport proteinCell biologyVirusPlant Viral Movement ProteinsTobacco Mosaic VirusProtein Transportmedicine.anatomical_structureInsect ScienceHydrophobic and Hydrophilic InteractionsProtein Binding
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RNA-binding properties and membrane insertion of Melon necrotic spot virus (MNSV) double gene block movement proteins

2006

AbstractAdvances in structural and biochemical properties of carmovirus movement proteins (MPs) have only been obtained in p7 and p9 from Carnation mottle virus (CarMV). Alignment of carmovirus MPs revealed a low conservation of amino acid identity but interestingly, similarity was elevated in regions associated with the functional secondary structure elements reported for CarMV which were conserved in all studied proteins. Nevertheless, some differential features in relation with CarMV MPs were identified in those from Melon necrotic virus (MNSV) (p7A and p7B). p7A was a soluble non-sequence specific RNA-binding protein, but unlike CarMV p7, its central region alone could not account for t…

Molecular Sequence DataSequence alignmentBiologyMembranes (Biologia)VirologyAmino Acid SequencePeptide sequenceProtein secondary structureIntegral membrane proteinPlant DiseasesMelon necrotic spot virusCarmovirusProteïnes de membranaRNA-Binding ProteinsRNAbiology.organism_classificationRNA-binding domainVirusPlant Viral Movement ProteinsCucurbitaceaeMovement proteinsBiochemistryCarnation mottle virusMelon plantsCarmovirusMNSVMembrane insertionSequence AlignmentGene DeletionVirology
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Might exogenous circular RNAs act as protein-coding transcripts in plants?

2021

Circular RNAs (circRNAs) are regulatory molecules involved in the modulation of gene expression. Although originally assumed as non-coding RNAs, recent studies have evidenced that animal circRNAs can act as translatable transcripts. The study of plant-circRNAs is incipient, and no autonomous coding plant-circRNA has been described yet. Viroids are the smallest plant-pathogenic circRNAs known to date. Since their discovery 50 years ago, viroids have been considered valuable systems for the study of the structure-function relationships in RNA, essentially because they have not been shown to have coding capacity. We used two pathogenic circRNAs (Hop stunt viroid and Eggplant latent viroid) as …

Protein codingViroid-derived peptidesPlant coding circRNAsvirusesfood and beveragesRNA CircularCell BiologyPlantsBiologyVirus ReplicationPlant pathogenic RNAsViroidsPlant VirusesRegulatory moleculesCell biologyNon canonical transcriptsGene expressionRNA ViralSolanum melongenaPoint of ViewMolecular BiologyCircular RNAsPlant DiseasesArticle Commentary
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Plant virus cell-to-cell movement is not dependent on the transmembrane disposition of its movement protein

2009

ABSTRACT The cell-to-cell transport of plant viruses depends on one or more virus-encoded movement proteins (MPs). Some MPs are integral membrane proteins that interact with the membrane of the endoplasmic reticulum, but a detailed understanding of the interaction between MPs and biological membranes has been lacking. The cell-to-cell movement of the Prunus necrotic ringspot virus (PNRSV) is facilitated by a single MP of the 30K superfamily. Here, using a myriad of biochemical and biophysical approaches, we show that the PNRSV MP contains only one hydrophobic region (HR) that interacts with the membrane interface, as opposed to being a transmembrane protein. We also show that a proline resi…

ImmunologyMolecular Sequence DataMicrobiologiaBiologyIlarvirusMicrobiologyCell membraneSequence Analysis ProteinVirologymedicineAmino Acid SequenceMovement proteinPeptide sequenceIntegral membrane proteinPhospholipidsEndoplasmic reticulumCircular DichroismCell MembraneProteïnes de membranaBiological membraneVirus InternalizationTransmembrane proteinCell biologyVirus-Cell InteractionsVirusPlant Viral Movement ProteinsMembranemedicine.anatomical_structureBiochemistryInsect ScienceMutationPrunusHydrophobic and Hydrophilic InteractionsSequence Alignment
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Hop stunt viroid: A polyphagous pathogenic RNA that has shed light on viroid–host interactions

2021

[Taxonomy]: Hop stunt viroid (HSVd) is the type species of the genus Hostuviroid (family Pospiviroidae). The other species of this genus is Dahlia latent viroid, which presents an identical central conserved region (CCR) but lacks other structural hallmarks present in Hop stunt viroid. HSVd replication occurs in the nucleus through an asymmetric rolling-circle model as in the other members of the family Pospiviroidae, which also includes the genera Pospiviroid, Cocadviroid, Apscaviroid, and Coleoviroid.

0106 biological sciences0301 basic medicinereplicationViroidPospiviroidaeviroidsSoil ScienceGenome ViralPlant ScienceVirus Replication01 natural sciencesEpigenesis GeneticPlant Viruses03 medical and health sciencesCircular RNAGenusPathogen ProfileMolecular BiologyPlant DiseasesGeneticsepigeneticsbiologypathogenesisGenetic VariationRNAbiology.organism_classificationType species030104 developmental biologyPospiviroidHop stunt viroidHost-Pathogen InteractionsRNA ViralmovementAgronomy and Crop Science010606 plant biology & botanyMolecular Plant Pathology
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