showing 130 related works from this author
FLEX End-to-End Mission Performance Simulator
2016
The FLuorescence EXplorer (FLEX) mission, selected as the European Space Agency's eighth Earth Explorer, aims to globally measure the sun-induced-chlorophyll-fluorescence spectral emission from terrestrial vegetation. In the frame of the FLEX mission, several industrial and scientific studies have analyzed the instrument design, image processing algorithms, or modeling aspects. At the same time, a common tool is needed to address the overall FLEX mission performance by combining all these features. For this reason, an end-to-end mission performance simulator has been developed for the FLEX mission (FLEX-E). This paper describes the FLEX-E software design, which combines the generation of co…
Replacing radiative transfer models by surrogate approximations through machine learning
2015
Physically-based radiative transfer models (RTMs) help in understanding the processes occurring on the Earth's surface and their interactions with vegetation and atmosphere. However, advanced RTMs can take a long computational time, which makes them unfeasible in many real applications. To overcome this problem, it has been proposed to substitute RTMs through so-called emulators. Emulators are statistical models that approximate the functioning of RTMs. They are advantageous in real practice because of the computational efficiency and excellent accuracy and flexibility for extrapolation. We here present an ‘Emulator toolbox’ that enables analyzing three multi-output machine learning regress…
Atmospheric correction of ENVISAT/MERIS data over inland waters: Validation for European lakes
2010
Traditional methods for aerosol retrieval and atmospheric correction of remote sensing data over water surfaces are based on the assumption of zero water reflectance in the near-infrared. Another type of approach which is becoming very popular in atmospheric correction over water is based on the simultaneous retrieval of atmospheric and water parameters through the inversion of coupled atmospheric and bio-optical water models. Both types of approaches may lead to substantial errors over optically-complex water bodies, such as case II waters, in which a wide range of temporal and spatial variations in the concentration of water constituents is expected. This causes the water reflectance in t…
Brown and green LAI mapping through spectral indices
2015
Abstract When crops senescence, leaves remain until they fall off or are harvested. Hence, leaf area index (LAI) stays high even when chlorophyll content degrades to zero. Current LAI approaches from remote sensing techniques are not optimized for estimating LAI of senescent vegetation. In this paper a two-step approach has been proposed to realize simultaneous LAI mapping over green and senescent croplands. The first step separates green from brown LAI by means of a newly proposed index, ‘Green Brown Vegetation Index (GBVI)’. This index exploits two shortwave infrared (SWIR) spectral bands centred at 2100 and 2000 nm, which fall right in the dry matter absorption regions, thereby providing…
Multitemporal fusion of Landsat and MERIS images
2011
Monitoring Earth dynamics from current and future observation satellites is one of the most important objectives for the remote sensing community. In this regard, the exploitation of image time series from sensors with different characteristics provides an opportunity to increase the knowledge about environmental changes, which are needed in many operational applications, such as monitoring vegetation dynamics and land cover/use changes. Many studies in the literature have proven that high spatial resolution sensors like Landsat are very useful for monitoring land cover changes. However, the cloud cover probability of many areas and the 15-days temporal resolution restrict its use to monito…
Calibration and Validation of Algorithms for the Estimation of Chlorophyll-A in Inland Waters with Sentinel-2
2018
The Ocean Color 2 (OC2), Ocean Color 3 (OC3) and Dall'Olmo three-band (TBDO) algorithms used for the estimation of the chlorophyll-a concentration [Chl-a] have been calibrated and validated for Sentinel-2 spectral bands. Measurements of in situ chlorophyll-a, radiometry and simulations with HydroLight have been used for this purpose within the Ecological Status of AQuatic Systems Satellites (ESAQS) Project to estimate water quality in aquatic systems in Spain. The results show that Sentinel-2 spectral bands are suitable for studying the chlorophyll-a concentration in inland waters. The TBDO algorithm have been applied to Sentinel-2 images and satisfactory results have been obtained in Albuf…
Remote Sensing Geometric Corrections
2016
This article reviews the different aspects of geometrical processing of remote sensing data, discussing error sources and methods to determine the transformation from the image acquisition geometry to the output cartographic product. Resampling methods are discussed to transform the input image to the output geometry. Several practical examples of remote sensing platforms are discussed, including satellite cases and airborne sensors. Validation of the resulting geometrical processed products is also discussed. Spatial mosaicking techniques and multitemporal composites used to produce multisource integrated products and advanced applications are finally considered, keeping a perspective on t…
Semi-Supervised Classification Method for Hyperspectral Remote Sensing Images
2004
A new approach to the classification of hyperspectral images is proposed. The main problem with supervised methods is that the learning process heavily depends on the quality of the training data set. In remote sensing, the training set is useful only for simultaneous images or for images with the same classes taken under the same conditions; and, even worse, the training set is frequently not available. On the other hand, unsupervised methods are not sensitive to the number of labelled samples since they work on the whole image. Nevertheless, relationship between clusters and classes is not ensured. In this context, we propose a combined strategy of supervised and unsupervised learning met…
How Universal Is the Relationship between Remotely Sensed Vegetation Indices and Crop Leaf Area Index? A Global Assessment
2016
This study aims to assess the relationship between Leaf Area Index (LAI) and remotely sensed Vegetation Indices (VIs) for major crops, based on a globally explicit dataset of in situ LAI measurements over a significant set of locations. We used a total of 1394 LAI measurements from 29 sites spanning 4 continents and covering 15 crop types with corresponding Landsat satellite images. Best-fit functions for the LAI-VI relationships were generated and assessed in terms of crop type, vegetation index, level of radiometric/atmospheric processing, method of LAI measurement, as well as the time difference between LAI measurements and satellite overpass. These global LAI-VI relationships were evalu…
Very high spectral resolution imaging spectroscopy: The Fluorescence Explorer (FLEX) mission
2016
The Fluorescence Explorer (FLEX) mission has been recently selected as the 8th Earth Explorer by the European Space Agency (ESA). It will be the first mission specifically designed to measure from space vegetation fluorescence emission, by making use of very high spectral resolution imaging spectroscopy techniques. Vegetation fluorescence is the best proxy to actual vegetation photosynthesis which can be measurable from space, allowing an improved quantification of vegetation carbon assimilation and vegetation stress conditions, thus having key relevance for global mapping of ecosystems dynamics and aspects related with agricultural production and food security. The FLEX mission carries the…
Retrieval of chlorophyll content and LAI of crops using hyperspectral techniques: application to PROBA/CHRIS data
2008
Hyperspectral/multiangular data allow the retrieval of important vegetation properties at canopy level, such as the Leaf Area Index (LAI) and Leaf Chlorophyll Content. Current methods are based on the relationship between biophysical properties and retrievals from those spectral bands (from the complete hyperspectral/multiangular information) where specific absorption features are present within the considered spectral range. Furthermore, new sensors such as PROBA/CHRIS provide continuous hyperspectral reflectance measurements that can be considered as a continuous function of wavelength. The mathematical analysis of these continuous functions allows a new way of exploiting the relationship…
Modelling spatial and spectral systematic noise patterns on CHRIS/PROBA hyperspectral data
2006
In addition to typical random noise, remote sensing hyperspectral images are generally affected by non-periodic partially deterministic disturbance patterns due to the image formation process and characterized by a high degree of spatial and spectral coherence. This paper presents a new technique that faces the problem of removing the spatial coherent noise known as vertical stripping (VS) usually found in images acquired by push-broom sensors, in particular for the Compact High Resolution Imaging Spectrometer (CHRIS). The correction is based on the hypothesis that the vertical disturbance presents higher spatial frequencies than the surface radiance. The proposed method introduces a way to…
Quantifying Vegetation Biophysical Variables from Imaging Spectroscopy Data: A Review on Retrieval Methods
2019
An unprecedented spectroscopic data stream will soon become available with forthcoming Earth-observing satellite missions equipped with imaging spectroradiometers. This data stream will open up a vast array of opportunities to quantify a diversity of biochemical and structural vegetation properties. The processing requirements for such large data streams require reliable retrieval techniques enabling the spatiotemporally explicit quantification of biophysical variables. With the aim of preparing for this new era of Earth observation, this review summarizes the state-of-the-art retrieval methods that have been applied in experimental imaging spectroscopy studies inferring all kinds of vegeta…
Global Sensitivity Analysis of Leaf-Canopy-Atmosphere RTMs: Implications for Biophysical Variables Retrieval from Top-of-Atmosphere Radiance Data.
2019
Knowledge of key variables driving the top of the atmosphere (TOA) radiance over a vegetated surface is an important step to derive biophysical variables from TOA radiance data, e.g., as observed by an optical satellite. Coupled leaf-canopy-atmosphere Radiative Transfer Models (RTMs) allow linking vegetation variables directly to the at-sensor TOA radiance measured. Global Sensitivity Analysis (GSA) of RTMs enables the computation of the total contribution of each input variable to the output variance. We determined the impacts of the leaf-canopy-atmosphere variables into TOA radiance using the GSA to gain insights into retrievable variables. The leaf and canopy RTM PROSAIL was coupled with…
Influencia del ángulo de observación en la estimación del índice de área foliar (LAI) mediante imágenes PROBA/CHRIS
2016
La estimación de variables biofísicas como el Índice de Área Foliar (LAI) mediante técnicas de teledetección es objeto de numerosos estudios, ya que de su conocimiento se puede extraer valiosa información sobre el estado de la vegetación. En este trabajo se estudia la estimación del LAI mediante imágenes multiangulares PROBA/CHRIS, analizando el comportamiento de la reflectividad medida en sus 5 ángulos de observación, en las longitudes de onda de 665 y 705 nm correspondientes a la banda de absorción de la clorofila y la reflectividad de la vegetación en el Red-Edge, respectivamente. El Índice de Diferencia Normalizada (NDI) calculado en estas longitudes de onda, mostró una buena correlació…
HICO L1 and L2 data processing: Radiometric recalibration, atmospheric correction and retrieval of water quality parameters
2015
The Hyperspectral Imager for the Coastal Ocean (HICO) is an imaging spectrometer designed with a very high signal-to-noise ratio to monitor coastal ocean and inland waters. The processing of Top-Of-Atmosphere radiance data down to surface reflectance is fundamental for the retrieval of water quality products. However, the current HICO processing chain does not provide atmospheric corrected data nor higher-level water quality products. This paper describes the algorithms implemented within an HICO data processing chain that includes image pre-processing, atmospheric correction and the retrieval of water quality parameters. The implemented algorithms have been validated over a set of HICO ima…
Performance of Spectral Fitting Methods for vegetation fluorescence quantification
2010
The Fraunhofer Line Discriminator (FLD) principle has long been considered as the reference method to quantify solar-induced chlorophyll fluorescence (F) from passive remote sensing measurements. Recently, alternative retrieval algorithms based on the spectral fitting of hyperspectral radiance observations, Spectral Fitting Methods (SFMs), have been proposed. The aim of this manuscript is to investigate the performance of such algorithms and to provide relevant information regarding their use. FLD and SFMs were used to estimate F starting from Top Of Canopy (TOC) fluxes at very high spectral resolution (0.12 nm) and sampling interval (0.1 nm), exploiting the O2-B (687.0 nm) and O2-A (760.6 …
Linking chlorophyll a fluorescence to photosynthesis for remote sensing applications: mechanisms and challenges
2014
Chlorophyll a fluorescence (ChlF) has been used for decades to study the organization, functioning, and physiology of photosynthesis at the leaf and subcellular levels. ChlF is now measurable from remote sensing platforms. This provides a new optical means to track photosynthesis and gross primary productivity of terrestrial ecosystems. Importantly, the spatiotemporal and methodological context of the new applications is dramatically different compared with most of the available ChlF literature, which raises a number of important considerations. Although we have a good mechanistic understanding of the processes that control the ChlF signal over the short term, the seasonal link between ChlF…
Evaluation of Sentinel-2 Red-Edge Bands for Empirical Estimation of Green LAI and Chlorophyll Content
2011
ESA’s upcoming satellite Sentinel-2 will provide Earth images of high spatial, spectral and temporal resolution and aims to ensure continuity for Landsat and SPOT observations. In comparison to the latter sensors, Sentinel-2 incorporates three new spectral bands in the red-edge region, which are centered at 705, 740 and 783 nm. This study addresses the importance of these new bands for the retrieval and monitoring of two important biophysical parameters: green leaf area index (LAI) and chlorophyll content (Ch). With data from several ESA field campaigns over agricultural sites (SPARC, AgriSAR, CEFLES2) we have evaluated the efficacy of two empirical methods that specifically make use of the…
The Fluorescence Explorer (FLEX) Mission: From Spectral Measurements to High-Level Science Products
2021
The Fluorescence Explorer (FLEX) mission was selected in 2015, by the European Space Agency (ESA), as an Earth Explorer mission, with a launch planned for 2024. The key scientific objective of the mission is the quantitative global mapping of actual photosynthetic activity of terrestrial ecosystems, as a function of variable vegetation health status and environmental stress conditions. The measurements will have a spatial resolution of 300 m, adequate to resolve land surface processes associated to vegetation dynamics at a global scale. To be able to accomplish such objective, the FLEX mission carries the FLORIS spectrometer, specially optimized to map vegetation fluorescence with a spectra…
A method for the surface reflectance retrieval from PROBA/CHRIS data over land: application to ESA SPARC campaigns
2005
The Compact High Resolution Imaging Spectrometer (CHRIS) onboard the Project for On-Board Autonomy (PROBA) platform system provides the first high spatial resolution hyper-spectral/multiangular remote sensing data from a satellite system, what represents a new source of information for Earth Observation purposes. A fully consistent radiative transfer approach is always preferred when dealing with the retrieval of surface reflectance from hyperspectral/multiangular data. However, due to the reported calibration anomalies for CHRIS data, a direct atmospheric correction based on physical radiative transfer modeling is not possible, and the method must somehow compensate for such calibration pr…
A red-edge spectral index for remote sensing estimation of green LAI over agroecosystems
2013
Abstract Leaf area index (LAI) is a key biophysical parameter for the monitoring of agroecosystems. Conventional two-band vegetation indices based on red and near-infrared relationships such as the normalized difference vegetation index (NDVI) are well known to suffer from saturation at moderate-to-high LAI values (3–5). To bypass this saturation effect, in this work a robust alternative has been proposed for the estimation of green LAI over a wide variety of crop types. By using data from European Space Agency (ESA) campaigns SPARC 2003 and 2004 (Barrax, Spain) experimental LAI values over 9 different crop types have been collected while at the same time spaceborne imagery have been acquir…
Diurnal Cycle Relationships between Passive Fluorescence, PRI and NPQ of Vegetation in a Controlled Stress Experiment
2017
In order to estimate vegetation photosynthesis from remote sensing observations; some critical parameters need to be quantified. From all absorbed light; the plant needs to release any excess that is not used for photosynthesis; by non-photochemical quenching; by fluorescence emission and unregulated thermal dissipation. Non-photochemical quenching (NPQ) processes are controlled photoprotective mechanisms which; once activated; strongly control the dynamics of photochemical efficiency. With illumination conditions increasing and decreasing during a diurnal cycle; photoprotection mechanisms needs to change accordingly. The goal of this work is to quantify dynamic NPQ; measured from active fl…
<title>Methodology for quantitative analysis of scaling effects in multiresolution datasets acquired with airborne sensors flying at different …
2001
Scaling issues are always playing a critical role in most studies based on remote sensing data. The process of getting quantitative scaling information from raw multi-resolution images is not trivial, and many aspects must be taken very carefully into consideration. To get a better picture about the role of spatial resolution, we conducted a series of flights in summer 1997, in several test sites over Spain and Portugal. In order to minimize the time of acquisition (to get minimal changes in atmospheric status and solar illumination) we used three flight altitude levels, that produced images with 1.25 m, 3 m and 12 m resolutions. The main steps in our methodology are: a) Geometrical registr…
Comparison of MODIS and Landsat-8 retrievals of Chlorophyll-a and water temperature over Lake Titicaca
2016
Chlorophyll-a concentration ([Chl-a]) and Lake Surface Temperature (LST) were retrieved in Lake Titicaca (Peru-Bolivia) using MODIS and Landsat-8 images. The lake was chosen as a case-study for evaluating the feasibility of Landsat-8 images for [Chl-a] and LST monitoring in oligotrophic and mesotrophic water bodies. The big size of the lake and its spatial and temporal variability, allowed the comparison of MODIS and Landsat-8 products for a wide range of [Chl-a] and LST. The atmospheric correction of the images was facilitated by the very high altitude of the lake. MODIS images were processed with standard ocean color algorithms whereas for Landsat-8, specific algorithms were tested and va…
Spectral band selection for vegetation properties retrieval using Gaussian processes regression
2020
Abstract With current and upcoming imaging spectrometers, automated band analysis techniques are needed to enable efficient identification of most informative bands to facilitate optimized processing of spectral data into estimates of biophysical variables. This paper introduces an automated spectral band analysis tool (BAT) based on Gaussian processes regression (GPR) for the spectral analysis of vegetation properties. The GPR-BAT procedure sequentially backwards removes the least contributing band in the regression model for a given variable until only one band is kept. GPR-BAT is implemented within the framework of the free ARTMO's MLRA (machine learning regression algorithms) toolbox, w…
Remote sensing of solar-induced chlorophyll fluorescence: Review of methods and applications
2009
Interest in remote sensing (RS) of solar-induced chlorophyll fluorescence (F) by terrestrial vegetation is motivated by the link of F to photosynthetic efficiency which could be exploited for large scale monitoring of plant status and functioning. Today, passive RS of F is feasible with different prototypes and commercial ground-based, airborne, and even spaceborne instruments under certain conditions. This interest is generating an increasing number of research projects linking F and RS, such as the development of new F remote retrieval techniques, the understanding of the link between the F signal and vegetation physiology and the feasibility of a satellite mission specifically designed f…
Systematic Assessment of MODTRAN Emulators for Atmospheric Correction
2021
Atmospheric radiative transfer models (RTMs) simulate the light propagation in the Earth's atmosphere. With the evolution of RTMs, their increase in complexity makes them impractical in routine processing such as atmospheric correction. To overcome their computational burden, standard practice is to interpolate a multidimensional lookup table (LUT) of prestored simulations. However, accurate interpolation relies on large LUTs, which still implies large computation times for their generation and interpolation. In recent years, emulation has been proposed as an alternative to LUT interpolation. Emulation approximates the RTM outputs by a statistical regression model trained with a low number …
Synthetic scene simulator for hyperspectral spaceborne passive optical sensors. Application to ESA's FLEX/sentinel-3 tandem mission
2014
The simulation of synthetic images serve scientists and engineers to study the instrument configuration as well as to develop image processing and retrieval strategies for a sensor in development. Despite synthetic scene simulators have been developed in the past in the frame of satellite missions, their functionality and flexibility to create a user-defined scene is limited by their architecture, design and implementation. This paper introduces the design of a generic scene simulator with the flexibility to generate realistic synthetic scenes by configuration of the surface and atmosphere. Following this generic design, a scene simulator is being developed for the ESA's Earth Explorer 8th …
A multi-instrument approach for characterizing the atmospheric aerosol optical thickness during the STAAARTE/DAISEX-99 campaign
2002
This work deals with the retrieval of the aerosol optical thickness (AOT) needed to carry out the atmospheric correction of remote sensing data measured in Barrax (Spain) on 4 June 1999 in the framework of 1999 Digital Airbone Imaging Spectrometer Experiment (DAISEX'99). The AOT was estimated through three approaches based on: spectral extinction of direct solar irradiance at ground level, airborne nephelometer measurements at different altitudes, and backscatter lidar in the lower troposphere. We found extremely low AOT values due to a cold Atlantic front that swept across the Iberian Peninsula from west to east producing light rain over the test area on 2 June 1999. The results were solar…
Foreword to the Special Issue on IGARSS 2018
2019
The papers in this special issue were presented at the 2018 International Geoscience and Remote Sensing Symposium (IGARSS-2018) was held on July 22–27, 2018 in Valencia, Spain.
Quantitative global mapping of terrestrial vegetation photosynthesis
2017
Although traditional remote sensing systems based on spectral reflectance can already provide estimates of the 'potential' photosynthetic activity of terrestrial vegetation through the quantification of total canopy chlorophyll content or absorbed photosynthetic radiation, the determination of the 'actual' photosynthetic activity of terrestrial vegetation requires information about how the absorbed light is used by plants, such as vegetation fluorescence, using very high spectral resolution spectroscopy in the range 650-800 nm. The Fluorescence Explorer (FLEX) mission, selected in November 2015 as the 8th Earth Explorer by the European Space Agency (ESA), carries the FLORIS spectrometer, wi…
Developments for vegetation fluorescence retrieval from spaceborne high-resolution spectrometry in the O2-A and O2-B absorption bands
2010
Solar-induced chlorophyll fluorescence is a weak electromagnetic signal emitted in the red and far-red spectral regions by vegetation chlorophyll under excitation by solar radiation. Chlorophyll fluorescence has been demonstrated to be a close proxy to vegetation physiological functioning. The basis for fluorescence retrieval from passive space measurements is the exploitation of the O2-A and O2-B atmospheric absorption features to isolate the fluorescence signal from the solar radiation reflected by the surface and the atmosphere. High spectral resolution measurements and a precise modeling of the atmospheric radiative transfer in the visible and near-infrared regions are mandatory. Recent…
Potential retrieval of biophysical parameters from FLORIS, S3-OLCI and its synergy
2012
The main objective of FLEX is the measurement of vegetation chlorophyll fluorescence (Fs) from space and the exploitation of this signal to better understand the carbon cycle. FLuORescence Imaging Spectrometer (FLORIS) is the main instrument of the FLEX mission concept. ESA's Earth Science Advisory Committee recommended the investigation of the FLEX concept as an in-orbit demonstrator to be flown as a tandem mission with Sentinel-3 (S-3). S-3 is amongst others equipped with the Ocean Land Colour Instrument (OLCI). When flown in tandem these instruments are expected to provide an accurate characterization of key atmospheric and surface parameters to facilitate Fs retrieval for FLORIS. In thi…
Prototyping Sentinel-2 green LAI and brown LAI products for cropland monitoring.
2022
Abstract For agricultural applications, identification of non-photosynthetic above-ground vegetation is of great interest as it contributes to assess harvest practices, detecting crop residues or drought events, as well as to better predict the carbon, water and nutrients uptake. While the mapping of green Leaf Area Index (LAI) is well established, current operational retrieval models are not calibrated for LAI estimation over senescent, brown vegetation. This not only leads to an underestimation of LAI when crops are ripening, but is also a missed monitoring opportunity. The high spatial and temporal resolution of Sentinel-2 (S2) satellites constellation offers the possibility to estimate …
Quantifying the Robustness of Vegetation Indices through Global Sensitivity Analysis of Homogeneous and Forest Leaf-Canopy Radiative Transfer Models
2019
Vegetation indices (VIs) are widely used in optical remote sensing to estimate biophysical variables of vegetated surfaces. With the advent of spectroscopy technology, spectral bands can be combined in numerous ways to extract the desired information. This resulted in a plethora of proposed indices, designed for a diversity of applications and research purposes. However, it is not always clear whether they are sensitive to the variable of interest while at the same time, responding insensitive to confounding factors. Hence, to be able to quantify the robustness of VIs, a systematic evaluation is needed, thereby introducing a widest possible variety of biochemical and structural heterogeneit…
Evaluation of remote sensing of vegetation fluorescence by the analysis of diurnal cycles
2008
Chlorophyll fluorescence (ChF) emission is a direct indicator of the photosynthetic activity of vegetation, which is a key parameter of the carbon cycle. This paper analyses chlorophyll fluorescence evolution at leaf level during a complete diurnal cycle in simulated and natural conditions, for two species under different stress conditions. Absolute spectral radiance of the ChF emission is obtained allowing a quantitative derivation of the fluorescence yield of the ChF, which correlates well with established fluorescence instruments. The studied cases show that the ChF emission is mainly driven by the photosynthetic active radiation during the whole cycle, but the fluorescence yield is seve…
Methodology for the retrieval of vegetation chlorophyll fluorescence from space in the frame of the flex mission preparatory
2016
FLEX (FLuorescence EXperiment) is a candidate mission for the European Space Agency (ESA) Earth Explorer program. The main objective of the mission is the measurement the chlorophyll fluorescence signal emitted by vegetation at the red and far-red spectral regions (roughly 630-770 nm). The current FLEX mission design includes different instruments intended to provide the appropriate characterization of those atmospheric and surface parameters necessary for the retrieval and interpretation of the fluorescence signal. The complete processing chain for the derivation of fluorescence and reflectance products from the radiance data acquired by the different instruments included in the FLEX paylo…
Thermal remote sensing from Airborne Hyperspectral Scanner data in the framework of the SPARC and SEN2FLEX projects: an overview
2009
Abstract. The AHS (Airborne Hyperspectral Scanner) instrument has 80 spectral bands covering the visible and near infrared (VNIR), short wave infrared (SWIR), mid infrared (MIR) and thermal infrared (TIR) spectral range. The instrument is operated by Instituto Nacional de Técnica Aerospacial (INTA), and it has been involved in several field campaigns since 2004. This paper presents an overview of the work performed with the AHS thermal imagery provided in the framework of the SPARC and SEN2FLEX campaigns, carried out respectively in 2004 and 2005 over an agricultural area in Spain. The data collected in both campaigns allowed for the first time the development and testing of algorithms for …
FLEX/S3 Tandem Mission Performance Assessment: Evolution of the End-to-End Simulator Flex-E
2018
An End-to-end simulator (E2ES) is a tool to evaluate the performance of a satellite mission. Once a mission is approved for operation, E2ES evolves during Phase C/D to become a supporting tool for the development and validation of the ground data processor, as well as for simulating data sets to test the Prototype and Operational Processors. FLEX-E is the E2ES of the FLEX/Sentinel-3 tandem mission, which was selected in 2015 as ESA's eighth Earth Explorer. The FLEX-E evolution implies the consolidation of all the retrieval algorithms (e.g. fluorescence, reflectance, biophysical variables), the implementation of new scientific developments, as well the improvement of the co-registration proc…
Misión FLEX (Fluorescence Explorer): Observación de la fluorescencia por teledetección como nueva técnica de estudio del estado de la vegetación terr…
2014
[EN] FLEX (Fluorescence EXplorer) is a candidate for the 8th ESA’s Earth Explorer mission. Is the first space mission specifically designed for the estimation of vegetation fluorescence on a global scale. The mission is proposed to fly in tandem with the future ESA´s Sentinel-3 satellite. It is foreseen that the information obtained by Sentinel-3 will be supplemented with that provided by FLORIS (Fluorescence Imaging Spectrometer) onboard FLEX. FLORIS will measure the radiance between 500 and 800 nm with a bandwidth between 0.1 nm and 2 nm, providing images with a 150 km swath and 300 m pixel size. This information will allow a detailed monitoring of vegetation dynamics, by improving the me…
Sentinel-3/FLEX Biophysical Product Confidence Using Sentinel-2 Land-Cover Spatial Distributions
2021
The estimation of biophysical variables from remote sensing data raises important challenges in terms of the acquisition technology and its limitations. In this way, some vegetation parameters, such as chlorophyll fluorescence, require sensors with a high spectral resolution that constrains the spatial resolution while significantly increasing the subpixel land-cover heterogeneity. Precisely, this spatial variability often makes that rather different canopy structures are aggregated together, which eventually generates important deviations in the corresponding parameter quantification. In the context of the Copernicus program (and other related Earth Explorer missions), this article propose…
Design of a Generic 3-D Scene Generator for Passive Optical Missions and Its Implementation for the ESA’s FLEX/Sentinel-3 Tandem Mission
2018
During the design phase of a satellite mission, end-to-end mission performance simulator (E2ES) tools allow scientists and engineers evaluating the mission concept, consolidating system technical requirements and analyzing the suitability of the implemented technical solutions and data processing algorithms. The generation of synthetic scenes is one of the core parts of an E2ES, providing scenes (ground truth) as would be observed by satellite instruments and used as reference against simulated retrieved mission products. An appropriate generation of the scene also allows assessing the performance of the ground data processing chain replacing real instrument data before the mission is in or…
Combined dynamics of the 500–600 nm leaf absorption and chlorophyll fluorescence changes in vivo: Evidence for the multifunctional energy quenching r…
2021
Carotenoids (Cars) regulate the energy flow towards the reaction centres in a versatile way whereby the switch between energy harvesting and dissipation is strongly modulated by the operation of the xanthophyll cycles. However, the cascade of molecular mechanisms during the change from light harvesting to energy dissipation remains spectrally poorly understood. By characterizing the in vivo absorbance changes (Delta A) of leaves from four species in the 500-600 nm range through a Gaussian decomposition, while measuring passively simultaneous Chla fluorescence (F) changes, we present a direct observation of the quick antenna adjustments during a 3-min dark-to-high-light induction. Underlying…
Regularized RBF Networks for Hyperspectral Data Classification
2004
In this paper, we analyze several regularized types of Radial Basis Function (RBF) Networks for crop classification using hyperspectral images. We compare the regularized RBF neural network with Support Vector Machines (SVM) using the RBF kernel, and AdaBoost Regularized (ABR) algorithm using RBF bases, in terms of accuracy and robustness. Several scenarios of increasing input space dimensionality are tested for six images containing six crop classes. Also, regularization, sparseness, and knowledge extraction are paid attention.
Sensitivity analysis of the fraunhofer line discrimination method for the measurement of chlorophyll fluorescence using a field spectroradiometer
2007
The Fraunhofer Line Discrimination (FLD) principle is established as a good method for remote sensing of solar induced chlorophyll fluorescence. Some improvements to the method are analysed in order to determine and reduce the sources of error in the estimation of the fluorescence emission. A sensitivity analysis has been performed over simulated data generated from real diurnal cycle measurements.
Fluorescence explorer (FLEX): An optimised payload to map vegetation photosynthesis from space
2006
The FLuorescence EXplorer (FLEX) mission proposes to launch a satellite for the global monitoring of steady-state chlorophyll fluorescence in terrestrial vegetation. Fluorescence is a sensitive probe of photosynthetic function in both healthy and physiologically perturbed vegetation, and a powerful non-invasive tool to track the status, resilience, and recovery of photochemical processes and moreover provides important information on overall photosynthetic performance with implications for related carbon sequestration. The early responsiveness of fluorescence to atmospheric, soil and plant water balance, as well as to atmospheric chemistry and human intervention in land usage makes it an ob…
Gaussian Processes Retrieval of LAI from Sentinel-2 Top-of-Atmosphere Radiance Data
2020
Abstract Retrieval of vegetation properties from satellite and airborne optical data usually takes place after atmospheric correction, yet it is also possible to develop retrieval algorithms directly from top-of-atmosphere (TOA) radiance data. One of the key vegetation variables that can be retrieved from at-sensor TOA radiance data is leaf area index (LAI) if algorithms account for variability in atmosphere. We demonstrate the feasibility of LAI retrieval from Sentinel-2 (S2) TOA radiance data (L1C product) in a hybrid machine learning framework. To achieve this, the coupled leaf-canopy-atmosphere radiative transfer models PROSAIL-6SV were used to simulate a look-up table (LUT) of TOA radi…
Assessment of Sentinel-2-MSI Atmospheric Correction Processors and In Situ Spectrometry Waters Quality Algorithms
2022
The validation of algorithms developed from in situ reflectance to estimate water quality variables has the challenge of atmospheric correction (AC) when applied to satellite images. Estimating water quality variables from satellite images requires an accurate estimation of remote sensing reflectances (Rrs) which vary according to the AC applied. Validation processes for both Rrs and water quality algorithms were carried out, relating the in situ Rrs (convoluted to Sentinel-2-MSI spectral response function) with the satellite Rrs coming from different ACs (C2RCC, C2X, C2XC, and Polymer), and also relating the in situ water quality variable data with estimated water quality variable values, …
Narrow-band to broad-band conversion for Meteosat-visiible channel and broad-band albedo using both AVHRR-1 and -2 channels
1995
Abstract Satellite-derived broad-band albedo offers a useful tool for monitoring surface conditions. Given the limited wavelength window of most satellite radiometers, satellite albedo studies need to define narrow-band to a broad-band transformations. Signals from the AVHRR channels on board the NOAA-11 satellite, the Meteosat visible channel and a rectangular spectral band from 0-3 to 2.5 μm were simulated for a set of 20 representative land surfaces. The radiative transfer code described in Tanre et al. (1990) was used to obtain top of the atmosphere radiances. The derived signals were then correlated to predict broadband albedo and the Meteosal response via the two AVHRR signals. The re…
Global sensitivity analysis of the SCOPE model : what drives simulated canopy - leaving sun - induced fluorescence?
2015
This study provides insight into the key variables that drive sun-induced chlorophyll fluorescence (SIF) emanating from vegetation canopies, based on a global sensitivity analysis (GSA) of the Soil-Canopy Observation of Photosynthesis and Energy (SCOPE) balance model. An updated version of the SCOPE model was used here (v1.53) which contains novel leaf physiological modules for determination of the steady state fluorescence yield: a photosynthesis model coupled with (a) submodels having empirically derived relationships, identified as TB12 for unstressed and TB12-D for drought conditions and (b) a mechanistic (MD12) submodel based on theoretical relationships. By inspecting Sobol's total or…
Sun-induced chlorophyll fluorescence III: benchmarking retrieval methods and sensor characteristics for proximal sensing
2019
[EN] The interest of the scientific community on the remote observation of sun-induced chlorophyll fluorescence (SIF) has increased in the recent years. In this context, hyperspectral ground measurements play a crucial role in the calibration and validation of future satellite missions. For this reason, the European cooperation in science and technology (COST) Action ES1309 OPTIMISE has compiled three papers on instrument characterization, measurement setups and protocols, and retrieval methods (current paper). This study is divided in two sections; first, we evaluated the uncertainties in SIF retrieval methods (e.g., Fraunhofer line depth (FLD) approaches and spectral fitting method (SFM))…
Comparison Between Fractional Vegetation Cover Retrievals from Vegetation Indices and Spectral Mixture Analysis: Case Study of PROBA/CHRIS Data Over …
2009
Abstract: In this paper we compare two different methodologies for Fractional Vegetation Cover (FVC) retrieval from Compact High Resolution Imaging Spectrometer (CHRIS) data onboard the European Space Agency (ESA) Project for On-Board Autonomy (PROBA) platform. The first methodology is based on empirical approaches using Vegetation Indices (VIs), in particular the Normalized Difference Vegetation Index (NDVI) and the Variable Atmospherically Resistant Index (VARI). The second methodology is based on the Spectral Mixture Analysis (SMA) technique, in which a Linear Spectral Unmixing model has been considered in order to retrieve the abundance of the different constituent materials within pixe…
Gaussian processes retrieval of leaf parameters from a multi-species reflectance, absorbance and fluorescence dataset.
2013
Abstract: Biochemical and structural leaf properties such as chlorophyll content (Chl), nitrogen content (N), leaf water content (LWC), and specific leaf area (SLA) have the benefit to be estimated through nondestructive spectral measurements. Current practices, however, mainly focus on a limited amount of wavelength bands while more information could be extracted from other wavelengths in the full range (400-2500 nm) spectrum. In this research, leaf characteristics were estimated from a field-based multi-species dataset, covering a wide range in leaf structures and Chl concentrations. The dataset contains leaves with extremely high Chl concentrations (>100 mu g cm(-2)), which are seldom es…
Advances in the Retrieval and Interpretation of Solar-Induced Vegetation Chlorophyll Fluorescence Using Passive Remote Sensing Techniques
2021
In the context of the development and implementation of the Fluorescence Explorer (FLEX) mission, selected in 2015 by the European Space Agency (ESA) as the 8th Earth Explorer, many recent developments in the field of vegetation chlorophyll fluorescence have taken place in the last years. These advances include new retrieval approaches, more accurate and robust, and a much better understanding of the variability of the signal, facilitating the interpretation of the dynamical changes and the usage of the fluorescence signal in Earth models and applications. Although chlorophyll fluorescence is related to the actual photosynthetic activity of the plants, the link between fluorescence and phot…
Cloud screening with combined MERIS and AATSR images
2009
This paper presents a cloud screening algorithm based on ensemble methods that exploits the combined information from both MERIS and AATSR instruments on board ENVISAT in order to improve current cloud masking products for both sensors. The first step is to analyze the synergistic use of MERIS and AATSR images in order to extract some physically-based features increasing the separability of clouds and surface. Then, several artificial neural networks are trained using different sets of input features and different sets of training samples depending on acquisition and surface conditions. Finally, outputs of the trained neural networks are combined at the decision level to construct a more ac…
SCOPE-Based Emulators for Fast Generation of Synthetic Canopy Reflectance and Sun-Induced Fluorescence Spectra
2017
Progress in advanced radiative transfer models (RTMs) led to an improved understanding of reflectance (R) and sun-induced chlorophyll fluorescence (SIF) emission throughout the leaf and canopy. Among advanced canopy RTMs that have been recently modified to deliver SIF spectral outputs are the energy balance model SCOPE and the 3D models DART and FLIGHT. The downside of these RTMs is that they are computationally expensive, which makes them impractical in routine processing, such as scene generation and retrieval applications. To bypass their computational burden, a computationally effective technique has been proposed by only using a limited number of model runs, called emulation. The idea …
Retrieval of canopy water content of different crop types with two new hyperspectral indices: Water Absorption Area Index and Depth Water Index
2018
Crop canopy water content (CWC) is an essential indicator of the crop’s physiological state. While a diverse range of vegetation indices have earlier been developed for the remote estimation of CWC, most of them are defined for specific crop types and areas, making them less universally applicable. We propose two new water content indices applicable to a wide variety of crop types, allowing to derive CWC maps at a large spatial scale. These indices were developed based on PROSAIL simulations and then optimized with an experimental dataset (SPARC03; Barrax, Spain). This dataset consists of water content and other biophysical variables for five common crop types (lucerne, corn, potato, sugar …
Multitemporal fusion of Landsat/TM and ENVISAT/MERIS for crop monitoring
2013
Abstract Monitoring Earth dynamics using current and future satellites is one of the most important objectives of the remote sensing community. The exploitation of image time series from sensors with different characteristics provides new opportunities to increase the knowledge about environmental changes and to support many operational applications. This paper presents an image fusion approach based on multiresolution and multisensor regularized spatial unmixing. The approach yields a composite image with the spatial resolution of the high spatial resolution image while retaining the spectral and temporal characteristics of the medium spatial resolution image. The approach is tested using …
Land surface emissivity retrieval from different VNIR and TIR sensors
2008
This paper discusses the application and adaptation of two existing operational algorithms for land surface emissivity (epsiv) retrieval from different operational satellite/airborne sensors with bands in the visible and near-infrared (VNIR) and thermal IR (TIR) regions: (1) the temperature and emissivity separation algorithm, which retrieves epsiv only from TIR data and (2) the normalized-difference vegetation index thresholds method, in which epsiv is retrieved from VNIR data.
First results from the PROBA/CHRIS hyperspectral/multiangular satellite system over land and water targets
2005
The Project for On-Board Autonomy (PROBA) platform developed by the European Space Agency was launched on October 22, 2001. The instrument payload includes the Compact High Resolution Imaging Spectrometer (CHRIS). The coupled system provides high spatial resolution hyperspectral/multi-angular data, which represents a new-generation source of information for Earth observation purposes. The first results obtained from the preprocessing (noise removal and geometric/atmospheric correction) of two different datasets, collected over agricultural crops and inland waters, are presented in this letter. In situ measurements are used to assess the quality of the data and to validate the processing alg…
Upward and downward solar-induced chlorophyll fluorescence yield indices of four tree species as indicators of traffic pollution in Valencia
2013
Abstract: Passive steady-state chlorophyll fluorescence (Fs) provides a direct diagnosis of the functional status of vegetation photosynthesis. With the prospect of mapping Fs using remote sensing techniques, field measurements are mandatory to understand to which extent Fs allows detecting plant stress in different environments. Trees of four common species in Valencia were classified in either a low or a high local traffic exposure class based on their leaf magnetic value. Upward and downward hyperspectral fluorescence yield (FY) and indices based on the two Fs peaks (at 687 and 741 nm) were calculated. FY indices of P. canariensis and P. x acerifolia were significantly different between …
Assessment of inputs to land surface processes models derived from hyperspectral multiangular data
2002
Global Models of the Earth - Atmosphere System describe the role of the terrestrial biosphere using increasingly complex Land Surface Models (LSM). These models mimic the exchange of energy, water and carbon between the land and the atmosphere, with emphasis on the role of terrestrial vegetation. Literature shows a clear trend towards fully interactive LSM-s, i.e. accounting for the dynamic response of vegetation to weather and climate. The latter may not be limited to biomass accumulation and address slower changes in vegetation type and composition. Improving the performance of such models require addressing two broad questions: Can we measure vegetation properties with the accuracy requi…
Retrieving and Validating Leaf and Canopy Chlorophyll Content at Moderate Resolution: A Multiscale Analysis with the Sentinel-3 OLCI Sensor
2021
ESA’s Eighth Earth Explorer mission “FLuorescence EXplorer” (FLEX) will be dedicated to the global monitoring of the chlorophyll fluorescence emitted by vegetation. In order to properly interpret the measured fluorescence signal, essential vegetation variables need to be retrieved concomitantly. FLEX will fly in tandem formation with Sentinel-3 (S3), which conveys the Ocean and Land Color Instrument (OLCI) that is designed to characterize the atmosphere and the terrestrial vegetation at a spatial resolution of 300 m. In support of FLEX’s preparatory activities, this paper presents a first validation exercise of OLCI vegetation products against in situ data coming from the 2018 FLEXSense cam…
An Emulator Toolbox to Approximate Radiative Transfer Models with Statistical Learning
2015
Physically-based radiative transfer models (RTMs) help in understanding the processes occurring on the Earth’s surface and their interactions with vegetation and atmosphere. When it comes to studying vegetation properties, RTMs allows us to study light interception by plant canopies and are used in the retrieval of biophysical variables through model inversion. However, advanced RTMs can take a long computational time, which makes them unfeasible in many real applications. To overcome this problem, it has been proposed to substitute RTMs through so-called emulators. Emulators are statistical models that approximate the functioning of RTMs. Emulators are advantageous in real practice because…
Seasonal variations of leaf area index of agricultural fields retrieved from Landsat data
2008
Abstract The derivation of leaf area index (LAI) from satellite optical data has been the subject of a large amount of work. In contrast, few papers have addressed the effective model inversion of high resolution satellite images for a complete series of data for the various crop species in a given region. The present study is focused on the assessment of a LAI model inversion approach applied to multitemporal optical data, over an agricultural region having various crop types with different crop calendars. Both the inversion approach and data sources are chosen because of their wide use. Crops in the study region (Barrax, Castilla–La Mancha, Spain) include: cereal, corn, alfalfa, sugar bee…
Chlorophyll content mapping of urban vegetation in the city of Valencia based on the hyperspectral NAOC index
2014
Abstract: Spatially distributed chlorophyll content of urban vegetation provides an important indicator of a plant's health status, which might depend on the habitat quality of the specific urban environment. Recent advances in optical remote sensing led to improved methodologies to monitor vegetation properties. The hyperspectral index NAOC (Normalized Area Over reflectance Curve) is one of these new tools that can be used for mapping chlorophyll content. In this paper we present the work done to quantify vegetation chlorophyll content over the city of Valencia (Spain) based on chlorophyll measurements of four representative tree species: the London plane tree (Platanus x. acerifolia), the…
Estimating chlorophyll content of crops from hyperspectral data using a normalized area over reflectance curve (NAOC)
2010
Abstract The Normalized Area Over reflectance Curve (NAOC) is proposed as a new index for remote sensing estimation of the leaf chlorophyll content of heterogeneous areas with different crops, different canopies and different types of bare soil. This index is based on the calculation of the area over the reflectance curve obtained by high spectral resolution reflectance measurements, determined, from the integral of the red–near-infrared interval, divided by the maximum reflectance in that spectral region. For this, use has been made of the experimental data of the SPARC campaigns, where in situ measurements were made of leaf chlorophyll content, LAI and fCOVER of 9 different crops – thus, …
Support Vector Machines for Crop Classification Using Hyperspectral Data
2003
In this communication, we propose the use of Support Vector Machines (SVM) for crop classification using hyperspectral images. SVM are benchmarked to well–known neural networks such as multilayer perceptrons (MLP), Radial Basis Functions (RBF) and Co-Active Neural Fuzzy Inference Systems (CANFIS). Models are analyzed in terms of efficiency and robustness, which is tested according to their suitability to real–time working conditions whenever a preprocessing stage is not possible. This can be simulated by considering models with and without a preprocessing stage. Four scenarios (128, 6, 3 and 2 bands) are thus evaluated. Several conclusions are drawn: (1) SVM yield better outcomes than neura…
Bidirectional sun-induced chlorophyll fluorescence emission is influenced by leaf structure and light scattering properties : a bottom-up approach
2015
Abstract Sun-induced chlorophyll fluorescence (SIF) at leaf level is emitted in both upward and downward directions in the red and far-red part of the spectrum (650–850 nm) when a leaf is illuminated from the upper leaf surface. Hence, total SIF is represented by the sum of the upward and downward emission components. Nevertheless, the downward component of leaf SIF is often not considered despite that downward fluorescence yield (↓FY) can amount up to 40% of the total fluorescence yield (FYtot). Downward SIF is mainly emitted in the far-red, since this part of fluoresced light is highly scattered within leaves, unlike red Chl fluorescence, which is mostly reabsorbed. While total FY can be …
Spectro-temporal reflectance surfaces: a new conceptual framework for the integration of remote-sensing data from multiple different sensors
2012
The conflict between spatial and temporal resolution of satellite systems, as well as the frequent presence of clouds in the images, has been a traditional limitation of remote sensing in the optical domain. Nevertheless, most of the conceptual tools and algorithms developed classically in remote sensing are based on the input of a series of cloud-free images from identical sensors. In this study, we propose a conceptual framework that is able to ingest data from several different sensors, make them homogeneous, eliminate clouds virtually, and make them usable in a flexible, efficient, and transparent way. The methodology is based on previous developments such as spatial ‘downscaling’, temp…
A sun-induced vegetation fluorescence retrieval method from top of atmosphere radiance for the FLEX/Sentinel-3 TanDEM mission
2015
A new fluorescence retrieval method is proposed to support ESA's 8th Earth Explorer FLuorescence EXplorer/Sentinel-3 (FLEX-S3) candidate tandem mission. FLEX is the first mission specially dedicated to measure the Sun-Induced vegetation chlorophyll fluorescence (SIF) strongly related with the vegetation photosynthetic activity. Most hyperspectral fluorescence retrieval algorithms available in the literature are very sensitive to true reflectance modelization and/or they assume the atmospheric status as known. The proposed algorithm delivers the retrieval of full fluorescence spectrum at canopy level by using only Top Of Atmosphere (TOA) radiances from S3 and FLEX as input. Once the spatial …
Gradient-Based Automatic Lookup Table Generator for Radiative Transfer Models
2022
Physically based radiative transfer models (RTMs) are widely used in Earth observation to understand the radiation processes occurring on the Earth’s surface and their interactions with water, vegetation, and atmosphere. Through continuous improvements, RTMs have increased in accuracy and representativity of complex scenes at expenses of an increase in complexity and computation time, making them impractical in various remote sensing applications. To overcome this limitation, the common practice is to precompute large lookup tables (LUTs) for their later interpolation. To further reduce the RTM computation burden and the error in LUT interpolation, we have developed a method to automaticall…
Multitemporal Mosaicing for Sentinel-3/FLEX Derived Level-2 Product Composites
2020
The increasing availability of remote sensing data raises important challenges in terms of operational data provision and spatial coverage for conducting global studies and analyses. In this regard, existing multitemporal mosaicing techniques are generally limited to producing spectral image composites without considering the particular features of higher-level biophysical and other derived products, such as those provided by the Sentinel-3 (S3) and Fluorescence Explorer (FLEX) tandem missions. To relieve these limitations, this article proposes a novel multitemporal mosaicing algorithm specially designed for operational S3-derived products and also studies its applicability within the FLEX…
Photoprotection dynamics observed at leaf level from fast temporal reflectance changes
2018
Vegetation dynamically reacts to the available photosynthetically active radiation (PAR) by adjusting the photosynthetic apparatus to either a light harvesting or a photoprotective modus. When activating the photoprotection mechanism, either minor or major pigment-protein interactions may occur at the leaf level, resulting in different light absorption and consequently reflectance intensities. The reflectance changes were measured during sudden illumination transients designed to provoke fast adaptation to high irradiance. Different spectral reflectance change features were observed during different stages of photoprotection activation, extending over part of the visible spectral range (i.e…
Remote Estimation of Canopy Water Content in Different Crop Types with New Hyperspectral Indices
2018
A diverse range of vegetation indices have earlier been developed for the remote estimation of canopy water content (CWC), but most of them are not universally applicable. The aim of this study is to define new indices valid for a wide variety of crop types, that allow to obtain CWC maps at a large spatial scale. These indices were developed based on PROSAIL simulations and then optimized with an experimental dataset (SPARC03; Barrax, Spain), which consists of field data including water content and other biophysical parameters collected for 6 different crops (lucerne, corn, potato, sugar beet, garlic and onion) and associated TOC reflectance spectra acquired by the HyMap airborne sensor. Sp…
Global sensitivity analysis of the A-SCOPE model in support of future FLEX fluorescence retrievals
2014
In support of ESA's Earth Explorer 8 candidate mission FLEX (FLuorescence EXplorer), a Photosynthesis Study has been initiated to quantitatively link fluorescence to photosynthesis. This led to the development of A-SCOPE, a graphical user interface software package that integrates multiple biochemical models into the soil-vegetation-atmosphere-transfer model SCOPE. Its latest version (v1.53) has been successfully verified and was subsequently evaluated through a global sensitivity analysis. By using the method of Saltelli [4], the relative importance of each input variable to model outputs was quantified through first order and total effect sensitivity indices. Variations in leaf area index…
Active Learning Methods for Efficient Hybrid Biophysical Variable Retrieval
2016
Kernel-based machine learning regression algorithms (MLRAs) are potentially powerful methods for being implemented into operational biophysical variable retrieval schemes. However, they face difficulties in coping with large training data sets. With the increasing amount of optical remote sensing data made available for analysis and the possibility of using a large amount of simulated data from radiative transfer models (RTMs) to train kernel MLRAs, efficient data reduction techniques will need to be implemented. Active learning (AL) methods enable to select the most informative samples in a data set. This letter introduces six AL methods for achieving optimized biophysical variable estimat…
Remote sensing of cyanobacterial blooms in a hypertrophic lagoon (Albufera of València, Eastern Iberian Peninsula) using multitemporal Sentinel-2 ima…
2018
Eutrophy in Albufera of Valencia (Eastern Iberian Peninsula) is a quite old problem since after the intense eutrophication processes throughout the 1960s. The system shifted to a turbid stable state consolidated by the virtual disappearance of macrophytes by the early 1970s. The lagoon has been studied extensively since the 1980s, but efforts to revert the system to a clear state have not yielded the expected results because cultural eutrophication due to the growth of population in its area of influence and the effects of climate change, decreasing rainfall and increasing evaporation. This has driven to an increase in water retention times in the lagoon in recent years, resulting in a phyt…
Study of the diurnal cycle of stressed vegetation for the improvement of fluorescence remote sensing
2006
Chlorophyll fluorescence (Chf) emission allows estimating the photosynthetic activity of vegetation - a key parameter for the carbon cycle models - in a quite direct way. However, measuring Chf is difficult because it represents a small fraction of the radiance to be measured by the sensor. This paper analyzes the relationship between the solar induced Chf emission and the photosynthetically active radiation (PAR) in plants under water stress condition. The solar induced fluorescence emission is measured at leaf level by means of three different methodologies. Firstly, an active modulated light fluorometer gives the relative fluorescence yield. Secondly, a quantitative measurement of the Ch…
Compensation of Oxygen Transmittance Effects for Proximal Sensing Retrieval of Canopy–Leaving Sun–Induced Chlorophyll Fluorescence
2018
Estimates of Sun–Induced vegetation chlorophyll Fluorescence (SIF) using remote sensing techniques are commonly determined by exploiting solar and/or telluric absorption features. When SIF is retrieved in the strong oxygen (O 2 ) absorption features, atmospheric effects must always be compensated. Whereas correction of atmospheric effects is a standard airborne or satellite data processing step, there is no consensus regarding whether it is required for SIF proximal–sensing measurements nor what is the best strategy to be followed. Thus, by using simulated data, this work provides a comprehensive analysis about how atmospheric effects impact SIF estimations on proximal sensing, regarding: (…
Retrieval of sun-induced fluorescence using advanced spectral fitting methods
2015
Abstract The FLuorescence EXplorer (FLEX) satellite mission, candidate of ESA's 8th Earth Explorer program, is explicitly optimized for detecting the sun-induced fluorescence emitted by plants. It will allow consistent measurements around the O2-B (687 nm) and O2-A (760 nm) bands, related to the red and far-red fluorescence emission peaks respectively, the photochemical reflectance index, and the structural-chemical state variables of the canopy. The sun-induced fluorescence signal, overlapped to the surface reflected radiance, can be accurately retrieved by employing the powerful spectral fitting technique. In this framework, a set of fluorescence retrieval algorithms optimized for FLEX ar…
In vivo photoprotection mechanisms observed from leaf spectral absorbance changes showing VIS–NIR slow-induced conformational pigment bed changes
2019
Abstract Regulated heat dissipation under excessive light comprises a complexity of mechanisms, whereby the supramolecular light-harvesting pigment–protein complex (LHC) shifts state from light harvesting towards heat dissipation, quenching the excess of photo-induced excitation energy in a non-photochemical way. Based on whole-leaf spectroscopy measuring upward and downward spectral radiance fluxes, we studied spectrally contiguous (hyperspectral) transient time series of absorbance A(λ,t) and passively induced chlorophyll fluorescence F(λ,t) dynamics of intact leaves in the visible and near-infrared wavelengths (VIS–NIR, 400–800 nm) after sudden strong natural-like illumination exposure. …
CEFLES2: The remote sensing component to quantify photosynthetic efficiency from the leaf to the region by measuring sun-induced fluorescence in the …
2009
The CEFLES2 campaign during the Carbo Europe Regional Experiment Strategy was designed to provide simultaneous airborne measurements of solar induced fluorescence and CO<sub>2</sub> fluxes. It was combined with extensive ground-based quantification of leaf- and canopy-level processes in support of ESA's Candidate Earth Explorer Mission of the "Fluorescence Explorer" (FLEX). The aim of this campaign was to test if fluorescence signal detected from an airborne platform can be used to improve estimates of plant mediated exchange on the mesoscale. Canopy fluorescence was quantified from four airborne platforms using a combination of novel sensors: (i) the prototype ai…
Fire severity estimation in southern of the Buenos Aires province, Argentina, using Sentinel-2 and its comparison with Landsat-8
2018
[EN] Assessment of rural fire severity is fundamental to evaluate fire damages and to analyze recovery processes in a low-cost and efficient way. Burnt areas covering shrubs and grasslands were estimated in more than 30,000 km2 in Argentina from December 2016 to January 2017. The study area presented in this work is located in the South of the Buenos Aires province, and it covers a semiarid area with the presence of xerophilous shrubs and grasslands. This is one of the most abundant ecosystem in Central and Southern Argentina. Field campaigns were carried out over the area affected by the fire in order to georreference the burnt plots and characterized the fire severity in 5 levels. The obj…
Gaussian processes uncertainty estimates in experimental Sentinel-2 LAI and leaf chlorophyll content retrieval
2013
Abstract ESA’s upcoming Sentinel-2 (S2) Multispectral Instrument (MSI) foresees to provide continuity to land monitoring services by relying on optical payload with visible, near infrared and shortwave infrared sensors with high spectral, spatial and temporal resolution. This unprecedented data availability leads to an urgent need for developing robust and accurate retrieval methods, which ideally should provide uncertainty intervals for the predictions. Statistical learning regression algorithms are powerful candidats for the estimation of biophysical parameters from satellite reflectance measurements because of their ability to perform adaptive, nonlinear data fitting. In this paper, we f…
Remote sensing of chlorophyll fluorescence for estimation of stress in vegetation. Recommendations for future missions
2007
Vegetation monitoring is a key issue in Earth Observation due to its relation with the global CO2 cycle. Chlorophyll fluorescence (ChF) emitted by the vegetation is an accurate indicator of the plant status and their photosynthetic activity. This work analyses the diurnal evolution of the ChF emission spectrum and the fluorescence yield in order to determine the best conditions for remote sensing of ChF from a satellite platform. The ChF evolution is studied at leaf level during several diurnal cycles, in simulated conditions, for two species under different stress conditions. The analysis of the signal levels gives an estimation of the values of ChF emission which could be observed from a …
Approximating Empirical Surface Reflectance Data through Emulation: Opportunities for Synthetic Scene Generation
2019
Collection of spectroradiometric measurements with associated biophysical variables is an essential part of the development and validation of optical remote sensing vegetation products. However, their quality can only be assessed in the subsequent analysis, and often there is a need for collecting extra data, e.g., to fill in gaps. To generate empirical-like surface reflectance data of vegetated surfaces, we propose to exploit emulation, i.e., reconstruction of spectral measurements through statistical learning. We evaluated emulation against classical interpolation methods using an empirical field dataset with associated hyperspectral spaceborne CHRIS and airborne HyMap reflectance spectra…
Remote sensing of solar-induced chlorophyll fluorescence (SIF) in vegetation: 50 years of progress
2019
Remote sensing of solar-induced chlorophyll fluorescence (SIF) is a rapidly advancing front in terrestrial vegetation science, with emerging capability in space-based methodologies and diverse application prospects. Although remote sensing of SIF – especially from space – is seen as a contemporary new specialty for terrestrial plants, it is founded upon a multi-decadal history of research, applications, and sensor developments in active and passive sensing of chlorophyll fluorescence. Current technical capabilities allow SIF to be measured across a range of biological, spatial, and temporal scales. As an optical signal, SIF may be assessed remotely using high-resolution spectral sensors in …
Multi-Season Phenology Mapping of Nile Delta Croplands Using Time Series of Sentinel-2 and Landsat 8 Green LAI
2022
Space-based cropland phenology monitoring substantially assists agricultural managing practices and plays an important role in crop yield predictions. Multitemporal satellite observations allow analyzing vegetation seasonal dynamics over large areas by using vegetation indices or by deriving biophysical variables. The Nile Delta represents about half of all agricultural lands of Egypt. In this region, intensifying farming systems are predominant and multi-cropping rotations schemes are increasing, requiring a high temporal and spatial resolution monitoring for capturing successive crop growth cycles. This study presents a workflow for cropland phenology characterization and mapping based on…
Hyperspectral dimensionality reduction for biophysical variable statistical retrieval
2017
Abstract Current and upcoming airborne and spaceborne imaging spectrometers lead to vast hyperspectral data streams. This scenario calls for automated and optimized spectral dimensionality reduction techniques to enable fast and efficient hyperspectral data processing, such as inferring vegetation properties. In preparation of next generation biophysical variable retrieval methods applicable to hyperspectral data, we present the evaluation of 11 dimensionality reduction (DR) methods in combination with advanced machine learning regression algorithms (MLRAs) for statistical variable retrieval. Two unique hyperspectral datasets were analyzed on the predictive power of DR + MLRA methods to ret…
A field study on solar-induced chlorophyll fluorescence and pigment parameters along a vertical canopy gradient of four tree species in an urban envi…
2013
Abstract: To better understand the potential uses of vegetation indices based on the sun-induced upward and downward chlorophyll fluorescence at leaf and at canopy scales, a field study was carried out in the city of Valencia (Spain). Fluorescence yield (FY) indices were derived for trees at different traffic intensity locations and at three canopy heights. This allowed investigating within-tree and between-tree variations of FY indices for four tree species. Several FY indices showed a significant (p < 0.05) and important effect of tree location for the species Morus alba (white mulberry) and Phoenix canariensis (Canary Island date palm). The upward FY parameters of M. alba, and the upward…
Plant chlorophyll fluorescence: active and passive measurements at canopy and leaf scales with different nitrogen treatments
2015
Highlight We studied for the first time the temporal and spatial limits within which active and passive chlorophyll fluorescence measurements are comparable.
A method for the atmospheric correction of ENVISAT/MERIS data over land targets
2007
An atmospheric correction algorithm for the retrieval of land surface reflectance from imagery acquired by the Medium Resolution Imaging Spectrometer (MERIS) on-board the European Space Agency (ESA) ENVIronmental SATellite (ENVISAT) platform has been implemented. The algorithm is designed to estimate the main atmospheric parameters needed in the correction, aerosol and water vapour contents, from the image itself, leading to an optimal characterization of the atmospheric state at the time of image acquisition. Once the atmospheric state has been defined, a second step deals with the retrieval of surface reflectance, accounting for the contribution of surface elevation and roughness as well …
Cloud-screening algorithm for ENVISAT/MERIS multispectral images
2007
This paper presents a methodology for cloud screening of multispectral images acquired with the Medium Resolution Imaging Spectrometer (MERIS) instrument on-board the Environmental Satellite (ENVISAT). The method yields both a discrete cloud mask and a cloud-abundance product from MERIS level-lb data on a per-pixel basis. The cloud-screening method relies on the extraction of meaningful physical features (e.g., brightness and whiteness), which are combined with atmospheric-absorption features at specific MERIS-band locations (oxygen and watervapor absorptions) to increase the cloud-detection accuracy. All these features are inputs to an unsupervised classification algorithm; the cloud-proba…
Emulation as an Accurate Alternative to Interpolation in Sampling Radiative Transfer Codes
2018
Computationally expensive radiative transfer models (RTMs) are widely used to realistically reproduce the light interaction with the earth surface and atmosphere. Because these models take long processing time, the common practice is to first generate a sparse look-up table (LUT) and then make use of interpolation methods to sample the multidimensional LUT input variable space. However, the question arise whether common interpolation methodsperform most accurate. As an alternative to interpolation, this paper proposes to use emulation, i.e., approximating the RTM output by means of the statistical learning. Two experiments were conducted to assess the accuracy in delivering spectral outputs…
Optimizing LUT-Based RTM Inversion for Semiautomatic Mapping of Crop Biophysical Parameters from Sentinel-2 and -3 Data: Role of Cost Functions
2014
Inversion of radiative transfer models (RTM) using a lookup-table (LUT) approach against satellite reflectance data can lead to concurrent retrievals of biophysical parameters such as leaf chlorophyll content (Chl) and leaf area index (LAI), but optimization strategies are not consolidated yet. ESA's upcoming satellites Sentinel-2 (S2) and Sentinel-3 (S3) aim to ensure continuity of old generation satellite sensors by providing superspectral images of high spatial and temporal resolution. This unprecedented data availability leads to an urgent need for developing robust, accurate, and operational retrieval methods. For three simulated Sentinel settings (S2-10 m: 4 bands, S2-20 m: 8 bands an…
An Overview of the Regional Experiments for Land-Atmosphere Exchanges 2012 (Reflex 2012) Campaign
2015
The REFLEX 2012 campaign was initiated as part of a training course on the organization of an airborne campaign to support advancement of the understanding of land-atmosphere interaction processes. This article describes the campaign, its objectives and observations, remote as well as in situ. The observations took place at the experimental Las Tiesas farm in an agricultural area in the south of Spain. During the period of ten days, measurements were made to capture the main processes controlling the local and regional land-atmosphere exchanges. Apart from multi-temporal, multi-directional and multi-spatial space-borne and airborne observations, measurements of the local meteorology, energy…
Optical remote sensing and the retrieval of terrestrial vegetation bio-geophysical properties – A review
2015
Abstract: Forthcoming superspectral satellite missions dedicated to land monitoring, as well as planned imaging spectrometers, will unleash an unprecedented data stream. The processing requirements for such large data streams involve processing techniques enabling the spatio-temporally explicit quantification of vegetation properties. Typically retrieval must be accurate, robust and fast. Hence, there is a strict requirement to identify next-generation bio-geophysical variable retrieval algorithms which can be molded into an operational processing chain. This paper offers a review of state-of-the-art retrieval methods for quantitative terrestrial bio-geophysical variable extraction using op…
Challenges in the atmospheric characterization for the retrieval of spectrally resolved fluorescence and PRI region dynamics from space
2021
Abstract In the coming years, Earth Observation missions like the FLuorescence EXplorer (FLEX) will acquire the radiance signal from the visible to the near-infrared at a very high spectral resolution, enabling exciting prospects for new insights in satellite-based photosynthetic studies. In this context, the process of de-coupling atmospheric and vegetation-related spectral signatures will become essential to guarantee a reliable estimation of the vegetation photosynthetic activity from space. Dynamic changes related to the vegetation photosynthetic status result in subtle contributions to the top of atmosphere radiance signal, e.g. due to the emission of the solar-induced chlorophyll fluo…
Spectral calibration of hyperspectral imagery using atmospheric absorption features
2006
One of the initial steps in the preprocessing of remote sensing data is the atmospheric correction of the at-sensor radiance images, i.e., radiances recorded at the sensor aperture. Apart from the accuracy in the estimation of the concentrations of the main atmospheric species, the retrieved surface reflectance is also influenced by the spectral calibration of the sensor, especially in those wavelengths mostly affected by gaseous absorptions. In particular, errors in the surface reflectance appear when a systematic shift in the nominal channel positions occurs. A method to assess the spectral calibration of hyperspectral imaging spectrometers from the acquired imagery is presented in this p…
Supervised Classifications of Optical Water Types in Spanish Inland Waters
2022
Remote sensing of lake water quality assumes there is no universal method or algorithm that can be applied in a general way on all inland waters, which usually have different in-water components affecting their optical properties. Depending on the place and time of year, the lake dynamics, and the particular components of the water, non-tailor-designed algorithms can lead to large errors or lags in the quantification of the water quality parameters, such as the suspended mineral sediments, dissolved organic matter, and chlorophyll-a concentration. Selecting the most suitable algorithm for each type of water is not a simple matter. One way to make selecting the most suitable water quality al…
A New Algorithm for the Retrieval of Sun Induced Chlorophyll Fluorescence of Water Bodies Exploiting the Detailed Spectral Shape of Water-Leaving Rad…
2021
Sun induced chlorophyll fluorescence (SICF) emitted by phytoplankton provides considerable insights into the vital role of the carbon productivity of the earth’s aquatic ecosystems. However, the SICF signal leaving a water body is highly affected by the high spectral variability of its optically active constituents. To disentangle the SICF emission from the water-leaving radiance, a new high spectral resolution retrieval algorithm is presented, which significantly improves the fluorescence line height (FLH) method commonly used so far. The proposed algorithm retrieves the reflectance without SICF contribution by the extrapolation of the reflectance from the adjacent regions. Then, the SICF …
Regularized multiresolution spatial unmixing for ENVISAT/MERIS and landsat/TM image fusion
2011
Earth observation satellites currently provide a large volume of images at different scales. Most of these satellites provide global coverage with a revisit time that usually depends on the instrument characteristics and performance. Typically, medium-spatial-resolution instruments provide better spectral and temporal resolutions than mapping-oriented high-spatial-resolution multispectral sensors. However, in order to monitor a given area of interest, users demand images with the best resolution available, which cannot be reached using a single sensor. In this context, image fusion may be effective to merge information from different data sources. In this letter, an image fusion approach ba…
Desarrollo de productos avanzados para la misión SEOSAT/Ingenio
2016
SEOSAT/Ingenio es la futura misión española de observación de la Tierra en el óptico en alta resolución espacial. Mientras que los productos de imagen a Nivel 1, radiancias geo-referenciadas a nivel de sensor, se encuentran en una fase avanzada de desarrollo existiendo para ello un contrato industrial, los productos de Nivel 2 deben ser desarrollados por los propios usuarios. Este hecho limita el uso de las imágenes a la comunidad científica, restringiendo sus posibles aplicaciones fuera de ésta. Así pues, bajo el marco de un proyecto coordinado y motivados por ofrecer productos de Ingenio/SEOSAT de Nivel 2 a disposición de cualquier usuario, se origina y desarrolla este trabajo. En este ar…
A RADARSAT-2 Quad-Polarized Time Series for Monitoring Crop and Soil Conditions in Barrax, Spain
2012
An analysis of the sensitivity of synthetic aperture radar (SAR) backscatter (σo) to crop and soil conditions was conducted using 57 RADARSAT-2 C-band quad-polarized SAR images acquired from April to September 2009 for large fields of wheat, barley, oat, corn, onion, and alfalfa in Barrax, Spain. Preliminary results showed that the cross-polarized σHVo was particularly useful for monitoring both crop and soil conditions and was the least sensitive to differences in beam incidence angle. The greatest separability of barley, corn, and onion occurred in spring after the barley had been harvested or in the narrow time window associated with grain crop heading when corn and onion were still imma…
Scene-based spectral calibration assessment of high spectral resolution imaging spectrometers
2009
An accurate knowledge of the spectral calibration of imaging spectrometers is required for optimum data processing and interpretation. The scene-based spectral characterization of imaging spectrometers is frequently necessary to update or replace the pre-flight laboratory-based spectral characterization supplied by the data provider. An automatic method for the estimation of spectral calibration parameters (channel position and bandwidth) at atmospheric absorption regions from high spectral resolution imaging spectrometers (spectral sampling interval below 5 nm) is presented in this contribution. The method has been tested on two commercial instruments with spectral sampling intervals below…
Multiple Cost Functions and Regularization Options for Improved Retrieval of Leaf Chlorophyll Content and LAI through Inversion of the PROSAIL Model
2013
Abstract: Lookup-table (LUT)-based radiative transfer model inversion is considered a physically-sound and robust method to retrieve biophysical parameters from Earth observation data but regularization strategies are needed to mitigate the drawback of ill-posedness. We systematically evaluated various regularization options to improve leaf chlorophyll content (LCC) and leaf area index (LAI) retrievals over agricultural lands, including the role of (1) cost functions (CFs); (2) added noise; and (3) multiple solutions in LUT-based inversion. Three families of CFs were compared: information measures, M-estimates and minimum contrast methods. We have only selected CFs without additional parame…
CHRIS/PROBA toolbox for hyperspectral and multiangular data exploitations
2009
The project CHRIS/Proba Toolbox for BEAM (CHRIS-Box) has been developed in order to support users of data from the CHRIS sensor onboard of ESA's Proba platform. BEAM and the CHRIS-Box are user tools which ESA/ESRTN are providing free of charge to the Earth Observation Community. The CHRIS-Box software provides extensions for BEAM that allows accomplishing the following tasks: a) Noise reduction to remove the vertical striping and other noise present in CHRIS response-corrected images; b) Cloud screening to mark cloudy pixels in CHRIS noise-corrected images; the cloud screening algorithm provides cloud probability and abundances for each pixel; c) Atmospheric correction that provides surface…
Spectral calibration and atmospheric correction of ultra-fine spectral and spatial resolution remote sensing data. Application to CASI-1500 data
2007
Imaging spectrometers operating in the solar spectrum measure the upwelling reflected solar radiation, and are an important tool in the bio/geochemical characterization of the Earth system. Surface reflectance is usually the starting point for the retrieval of biophysical parameters from remote measurements. Reliable radiometric and spectral calibrations and accurate atmospheric correction are mandatory in the interpretation of the surface reflectance. A complete surface reflectance retrieval scheme specifically designed for ultra-fine spectral resolution (bandwidth from 10 to 2 nm) and spatial resolution (pixel size less than 10 m) imaging spectrometers is presented in this work. The asses…
Cloud detection for CHRIS/Proba hyperspectral images
2005
Accurate and automatic detection of clouds in satellite scenes is a key issue for a wide range of remote sensing applications. With no accurate cloud masking, undetected clouds are one of the most significant source of error in both sea and land cover biophysical parameter retrieval. Sensors with spectral channels beyond 1 um have demonstrated good capabilities to perform cloud masking. This spectral range can not be exploited by recently developed hyperspectral sensors that work in the spectral range between 400- 1000 nm. However, one can take advantage of their high number of channels and spectral resolution to increase the cloud detection accuracy, and to describe properly the detected c…
Sentinel-1 & Sentinel-2 Data for Soil Tillage Change Detection
2018
In this paper, an algorithm using Sentinel-1 (S-1) and Sentinel-2 (S-2) data to identify changes of tillage over agricultural fields at approximately similar to 100m resolution is presented. The methodology implements a multiscale temporal change detection on S-1 VH backscatter in order to single out VH changes due to agricultural practices only. The algorithm can be applied over bare or scarcely vegetated agricultural fields, which are identified from S-2 NDVI measurements. An initial assessment at farm scale using in situ and S-1 and SPOT5-Take5 data, acquired over the Apulian Tavoliere in southern Italy in 2015, is illustrated. A full validation of the approach is in progress over three …
Experimental Sentinel-2 LAI estimation using parametric, non-parametric and physical retrieval methods – A comparison
2015
Abstract Given the forthcoming availability of Sentinel-2 (S2) images, this paper provides a systematic comparison of retrieval accuracy and processing speed of a multitude of parametric, non-parametric and physically-based retrieval methods using simulated S2 data. An experimental field dataset (SPARC), collected at the agricultural site of Barrax (Spain), was used to evaluate different retrieval methods on their ability to estimate leaf area index (LAI). With regard to parametric methods, all possible band combinations for several two-band and three-band index formulations and a linear regression fitting function have been evaluated. From a set of over ten thousand indices evaluated, the …
Quantifying vegetation biophysical variables from the Sentinel-3/FLEX tandem mission: Evaluation of the synergy of OLCI and FLORIS data sources
2020
The ESA’s forthcoming FLuorescence EXplorer (FLEX) mission is dedicated to the global monitoring of the vegetation’s chlorophyll fluorescence by means of an imaging spectrometer, FLORIS. In order to properly interpret the fluorescence signal in relation to photosynthetic activity, essential vegetation variables need to be retrieved concomitantly. FLEX will fly in tandem with Sentinel-3 (S3), which conveys the Ocean and Land Colour Instrument (OLCI) that is designed to characterize the atmosphere and the terrestrial vegetation at a spatial resolution of 300 m. In this work we present the retrieval models of four essential biophysical variables: (1) Leaf Area Index (LAI), (2) leaf chlorophyll…
The FLuorescence EXplorer Mission Concept-ESA's Earth Explorer 8
2017
In November 2015, the FLuorescence EXplorer (FLEX) was selected as the eighth Earth Explorer mission of the European Space Agency. The tandem mission concept will provide measurements at a spectral and spatial resolution enabling the retrieval and interpretation of the full chlorophyll fluorescence spectrum emitted by the terrestrial vegetation. This paper provides a mission concept overview of the scientific goals, the key objectives related to fluorescence, and the requirements guaranteeing the fitness for purpose of the resulting scientific data set. We present the mission design at the time of selection, i.e., at the end of project phase Phase A/B1, as developed by two independent indus…
Estimation of solar-induced vegetation fluorescence from space measurements
2007
[1] A characteristic spectral emission is observed in vegetation chlorophyll under excitation by solar radiation. This emission, known as solar-induced chlorophyll fluorescence, occurs in the red and near infra-red spectral regions. In this paper a new methodology for the estimation of solar-induced chlorophyll fluorescence from spaceborne and airborne sensors is presented. The fluorescence signal is included in an atmospheric radiative transfer scheme so that chlorophyll fluorescence and surface reflectance are retrieved consistently from the measured at-sensor radiance. This methodology is tested on images acquired by the Medium Resolution Imaging Spectrometer (MERIS) on board the ENVIron…
Impact of Structural, Photochemical and Instrumental Effects on Leaf and Canopy Reflectance Variability in the 500–600 nm Range
2021
Current rapid technological improvement in optical radiometric instrumentation provides an opportunity to develop innovative measurements protocols where the remote quantification of the plant physiological status can be determined with higher accuracy. In this study, the leaf and canopy reflectance variability in the PRI spectral region (i.e., 500–600 nm) is quantified using different laboratory protocols that consider both instrumental and experimental set-up aspects, as well as canopy structural effects and vegetation photoprotection dynamics. First, we studied how an incorrect characterization of the at-target incoming radiance translated into an erroneous vegetation reflectance spectru…
Machine learning regression algorithms for biophysical parameter retrieval: Opportunities for Sentinel-2 and -3
2012
Abstract ESA's upcoming satellites Sentinel-2 (S2) and Sentinel-3 (S3) aim to ensure continuity for Landsat 5/7, SPOT-5, SPOT-Vegetation and Envisat MERIS observations by providing superspectral images of high spatial and temporal resolution. S2 and S3 will deliver near real-time operational products with a high accuracy for land monitoring. This unprecedented data availability leads to an urgent need for developing robust and accurate retrieval methods. Machine learning regression algorithms may be powerful candidates for the estimation of biophysical parameters from satellite reflectance measurements because of their ability to perform adaptive, nonlinear data fitting. By using data from …
Mar Menor lagoon (SE Spain) chlorophyll-a and turbidity estimation with Sentinel-2
2022
Mar Menor is a Mediterranean Coastal lagoon with high environmental and social value, but has suffered important episodes of contamination in recent years due to heavy rains, sediment dragging and polluting substances mainly from agriculture as well as the entry of mining waste, causing an increase in eutrophication. Water quality variables such as chlorophyll-a concentration [Chl-a] and turbidity, can be studied through its optical properties by remote sensing techniques. In this work, a methodology is proposed for monitoring [Chl-a] and the turbidity of the Mar Menor using Sentinel-2 images. For this purpose, an extensive database of both variables was used consisting of data taken on dif…
ESA's sentinel missions in support of Earth system science
2012
Abstract The spatial and temporal characteristics of the new Sentinel missions, primarily designed to provide routine multidisciplinary observations for operational services, are also very suitable for addressing some of the challenges associated with advancing Earth System sciences. The Sentinels are ensuring long-term observational commitment and will operate a range of instruments with different spectral bands and spatial resolutions with global coverage and high revisit times. The complexity of Earth System models has been increasing gradually and most simulations of future climate and Earth system evolution are based on coupled models that include aspects of physics, bio/geo-chemistry,…
Coupled retrieval of aerosol optical thickness, columnar water vapor and surface reflectance maps from ENVISAT/MERIS data over land
2008
An algorithm for the derivation of atmospheric parameters and surface reflectance data from MEdium Resolution Imaging Specrometer Instrument (MERIS) on board ENVIronmental SATellite (ENVISAT) images has been developed. Geo-rectified aerosol optical thickness (AOT), columnar water vapor (CWV) and spectral surface reflectance maps are generated from MERIS Level-1b data over land. The algorithm has been implemented so that AOT, CWV and reflectance products are provided on an operational manner, making no use of ancillary parameters apart from those attached to MERIS products. For this reason, it has been named Self-Contained Atmospheric Parameters Estimation from MERIS data (SCAPE-M). The fund…
Evaluating the predictive power of sun-induced chlorophyll fluorescence to estimate net photosynthesis of vegetation canopies: A SCOPE modeling study
2016
Abstract Progress in imaging spectroscopy technology and data processing can enable derivation of the complete sun-induced chlorophyll fluorescence (SIF) emission spectrum. This opens up opportunities to fully exploit the use of the SIF spectrum as an indicator of photosynthetic activity. Simulations performed with the coupled fluorescence–photosynthesis model SCOPE were used to determine how strongly canopy-leaving SIF can be related to net photosynthesis of the canopy (NPC) for various canopy configurations. Regression analysis between SIF retrievals and NPC values produced the following general findings: (1) individual SIF bands that were most sensitive to NPC were located around the fir…
Sun-induced fluorescence - a new probe of photosynthesis: First maps from the imaging spectrometer HyPlant.
2015
Variations in photosynthesis still cause substantial uncertainties in predicting photosynthetic CO2 uptake rates and monitoring plant stress. Changes in actual photosynthesis that are not related to greenness of vegetation are difficult to measure by reflectance based optical remote sensing techniques. Several activities are underway to evaluate the sun-induced fluorescence signal on the ground and on a coarse spatial scale using space-borne imaging spectrometers. Intermediate-scale observations using airborne-based imaging spectroscopy, which are critical to bridge the existing gap between small-scale field studies and global observations, are still insufficient. Here we present the first …
Correction of systematic spatial noise in push-broom hyperspectral sensors: application to CHRIS/PROBA images
2008
Hyperspectral remote sensing images are affected by different types of noise. In addition to typical random noise, nonperiodic partially deterministic disturbance patterns generally appear in the data. These patterns, which are intrinsic to the image formation process, are characterized by a high degree of spatial and spectral coherence. We present a new technique that faces the problem of removing the spatially coherent noise known as vertical striping, usually found in images acquired by push-broom sensors. The developed methodology is tested on data acquired by the Compact High Resolution Imaging Spectrometer (CHRIS) onboard the Project for On-board Autonomy (PROBA) orbital platform, whi…
Canopy chlorophyll content and LAI estimation from Sentine1-2: Vegetation indices and Sentine1-2 Leve1-2A automatic products comparison
2019
The aim of this work is to analyze different methodologies for the estimation of leaf area index (LAI) and canopy chlorophyll content (CCC), using the Sentine1-2 satellite. LAI and CCC are biophysical parameters indicator of crop health state and fundamental in the productivity prediction. The purpose is to define the most optimal LAI and CCC estimation method for operational use in the monitoring of agricultural areas. Moreover, the CCC and LAI automatic products obtained directly through the Sentinel Application Platform Software (SNAP) biophysical processor and Sentine1-2 images by means of an artificial neural network (ANN) are validated. On the other hand, common vegetation indices use…
Remote sensing of sun-induced fluorescence to improve modeling of diurnal courses of gross primary production (GPP)
2010
Terrestrial gross primary production (GPP) is an important parameter to explore and quantify carbon fixation by plant ecosystems at various scales. Remote sensing (RS) offers a unique possibility to investigate GPP in a spatially explicit fashion; however, budgeting of terrestrial carbon cycles based on this approach still remains uncertain. To improve calculations, spatio-temporal variability of GPP must be investigated in more detail on local and regional scales. The overarching goal of this study is to enhance our knowledge on how environmentally induced changes of photosynthetic light-use efficiency (LUE) are linked with optical RS parameters. Diurnal courses of sun-induced fluorescence…
Multi-Crop Green LAI Estimation with a New Simple Sentinel-2 LAI Index (SeLI)
2019
The spatial quantification of green leaf area index (LAIgreen), the total green photosynthetically active leaf area per ground area, is a crucial biophysical variable for agroecosystem monitoring. The Sentinel-2 mission is with (1) a temporal resolution lower than a week, (2) a spatial resolution of up to 10 m, and (3) narrow bands in the red and red-edge region, a highly promising mission for agricultural monitoring. The aim of this work is to define an easy implementable LAIgreen index for the Sentinel-2 mission. Two large and independent multi-crop datasets of in situ collected LAIgreen measurements were used. Commonly used LAIgreen indices applied on the Sentinel-2 10 m ×
<title>Spectral/spatial integration effects on information extraction from multispectral data: multiresolution approaches</title>
1995
New techniques for information extraction from multispectral data require physical modeling to understand the energy transfer at the atmosphere/surface interface and to develop appropriate inversion procedures, in combination with advanced processing techniques. A multi-step procedure is proposed in this work: the first step implies a binary decision about the second step to be applied in each case. If the pixel is considered as being a `pure' pixel, through a spectral/spatial classification procedure based on multiresolution techniques, then numerical inversion techniques, based on a multiple-scattering reflectance model, are used to extract parameters representing specific surface propert…
Kernel image similarity criterion
2011
This paper presents a family of metrics for assessing image similarity. The methods use the Hilbert-Schmidt Independence Criterion (HSIC) to estimate nonlinear statistical dependence between multidimensional images. The proposed methods have very good theoretical and practical properties. We illustrate the performance in evaluating the quality of natural photographic images, hyperspectral images under different noise levels, in synthetic multiresolution problems, and real pansharpening products.
On the semi-automatic retrieval of biophysical parameters based on spectral index optimization
2014
Abstract: Regression models based on spectral indices are typically empirical formulae enabling the mapping of biophysical parameters derived from Earth Observation (EO) data. Due to its empirical nature, it remains nevertheless uncertain to what extent a selected regression model is the most appropriate one, until all band combinations and curve fitting functions are assessed. This paper describes the application of a Spectral Index (SI) assessment toolbox in the Automated Radiative Transfer Models Operator (ARTMO) package. ARTMO enables semi-automatic retrieval and mapping of biophysical parameters from optical remote sensing observations. The SI toolbox facilitates the assessment of biop…