0000000000054287
AUTHOR
G. Denaro
showing 15 related works from this author
How diffusivity, thermocline and incident light intensity modulate the dynamics of Deep Chlorophyll Maximum in Tyrrhenian Sea
2015
During the last few years theoretical works have shed new light and proposed new hypotheses on the mechanisms which regulate the spatio-temporal behaviour of phytoplankton communities in marine pelagic ecosystems. Despite this, relevant physical and biological issues, such as effects of the time- dependent mixing in the upper layer, competition between groups, and dynamics of non-stationary deep chlorophyll maxima, are still open questions. In this work, we analyze the spatio-temporal behaviour of five phytoplankton populations in a real marine ecosystem by using a one-dimensional reaction-diffusion-taxis model. The study is performed, taking into account the seasonal variations of environm…
STOCHASTIC DYNAMICS OF TWO PICOPHYTOPLANKTON POPULATIONS IN A REAL MARINE ECOSYSTEM
2013
A stochastic reaction-diffusion-taxis model is analyzed to get the stationary distribution along water column of two species of picophytoplankton, that is picoeukaryotes and Prochlorococcus. The model is valid for weakly mixed waters, typical of the Mediterranean Sea. External random fluctuations are considered by adding a multiplicative Gaussian noise to the dynamical equation of the nutrient concentration. The statistical tests show that shape and magnitude of the theoretical concentration profile exhibit a good agreement with the experimental findings. Finally, we study the effects of seasonal variations on picophytoplankton groups, including an oscillating term in the auxiliary equation…
Dynamics of Two Picophytoplankton Groups in Mediterranean Sea: Analysis of the Deep Chlorophyll Maximum by a Stochastic Advection-Reaction-Diffusion …
2013
A stochastic advection-reaction-diffusion model with terms of multiplicative white Gaussian noise, valid for weakly mixed waters, is studied to obtain the vertical stationary spatial distributions of two groups of picophytoplankton, i.e., picoeukaryotes and Prochlorococcus, which account about for 60% of total chlorophyll on average in Mediterranean Sea. By numerically solving the equations of the model, we analyze the one-dimensional spatio-temporal dynamics of the total picophytoplankton biomass and nutrient concentration along the water column at different depths. In particular, we integrate the equations over a time interval long enough, obtaining the steady spatial distributions for th…
Revisiting the role of top-down and bottom-up controls in stabilisation of nutrient-rich plankton communities
2019
Understanding the conditions for successful control of phytoplankton by zooplankton in eutrophic ecosystems is a highly important research area with a wide implementation of mathematical modelling. Theoretical models generally predict destabilisation of food webs in eutrophic environments with large-amplitude oscillations of population densities which would eventually result in species extinction. On the other hand, these theoretical predic- tions are often at odds with ecological observations demonstrating stable dynamics even for a high nutrient load. This apparent discrepancy is known in the literature as Rosen- zweig’s “paradox of enrichment”. Recent theoretical works emphasize a crucia…
Noise Induced Phenomena in the Dynamics of Two Competing Species
2015
Noise through its interaction with the nonlinearity of the living systems can give rise to counter-intuitive phenomena. In this paper we shortly review noise induced effects in different ecosystems, in which two populations compete for the same resources. We also present new results on spatial patterns of two populations, while modeling real distributions of anchovies and sardines. The transient dynamics of these ecosystems are analyzed through generalized Lotka-Volterra equations in the presence of multiplicative noise, which models the interaction between the species and the environment. We find noise induced phenomena such as quasi-deterministic oscillations, stochastic resonance, noise …
Spatio-temporal dynamics of a planktonic system and chlorophyll distribution in a 2D spatial domain: matching model and data
2017
AbstractField data on chlorophyll distribution are investigated in a two-dimensional spatial domain of the Mediterranean Sea by using for phytoplankton abundances an advection-diffusion-reaction model, which includes real values for physical and biological variables. The study exploits indeed hydrological and nutrients data acquired in situ, and includes intraspecific competition for limiting factors, i.e. light intensity and phosphate concentration. As a result, the model allows to analyze how both the velocity field of marine currents and the two components of turbulent diffusivity affect the spatial distributions of phytoplankton abundances in the Modified Atlantic Water, the upper layer…
HR3DHG version 1: modeling the spatiotemporal dynamics of mercury in the Augusta Bay (southern Italy)
2020
The biogeochemical dynamics of Hg, and specifically of its three species Hg0, HgII, and MeHg (elemental, inorganic, and organic, respectively), in the marine coastal area of Augusta Bay (southern Italy) have been explored by the high-resolution 3D Hg (HR3DHG) model, namely an advection–diffusion–reaction model for dissolved mercury in the seawater compartment coupled with a diffusion–reaction model for dissolved mercury in the pore water of sediments in which the desorption process for the sediment total mercury is taken into account. The spatiotemporal variability of the mercury concentration in both seawater ([HgD]) and the first layers of bottom sediments ([HgDsed] and [HgTsed]), as well…
The role of noise on the steady state distributions of phytoplankton populations
2016
The spatio-temporal behaviour of total chlorophyll concentration is investigated in the middle of the Tyrrhenian Sea by using a stochastic approach. The study is based on a reaction-diffusion-taxis model, which is used to analyse the dynamics of five phytoplankton groups, responsible for about 80% of the total chlorophyll a inside the euphotic zone of the water column. The analysis is performed by considering: (i) the intraspecific competition of the phytoplanktonic groups for limiting factors, i.e. light intensity and nutrient concentration, (ii) the seasonal changes of environmental variables, and (iii) the random fluctuations of the components of the velocity field and temperature. Speci…
Stochastic models for phytoplankton dynamics in Mediterranean Sea
2016
Abstract In this paper, we review some results obtained from three one-dimensional stochastic models, which were used to analyze picophytoplankton dynamics in two sites of the Mediterranean Sea. Firstly, we present a stochastic advection–reaction–diffusion model to describe the vertical spatial distribution of picoeukaryotes in a site of the Sicily Channel. The second model, which is an extended version of the first one, is used to obtain the vertical stationary profiles of two groups of picophytoplankton, i.e. Pelagophytes and Prochlorococcus, in the same marine site as in the previous case. Here, we include intraspecific competition of picophytoplanktonic groups for limiting factors, i.e.…
Modeling of Sensory Characteristics Based on the Growth of Food Spoilage Bacteria
2016
During last years theoretical works shed new light and proposed new hypothesis on the mechanisms which regulate the time behaviour of biological populations in different natural systems. Despite of this, the role of environmental variables in ecological systems is still an open question. Filling this gap of knowledge is a crucial task for a deeper comprehension of the dynamics of biological populations in real ecosystems. In this work we study how the dynamics of food spoilage bacteria influences the sensory characteristics of fresh fish specimens. This topic is crucial for a better understanding of the role played by the bacterial growth on the organoleptic properties, and for the quality …
A novel method to simulate the 3D chlorophyll distribution in marine oligotrophic waters
2021
Abstract A 3D advection-diffusion-reaction model is proposed to investigate the abundance of phytoplankton in a difficult-to-access ecosystem such as the Gulf of Sirte (southern Mediterranean Sea) characterized by oligotrophic waters. The model exploits experimentally measured environmental variables to reproduce the dynamics of four populations that dominate phytoplankton community in the studied area: Synechococcus, Prochlorococcus HL, Prochlorococcus LL and picoeukaryotes. The theoretical results obtained for phytoplankton abundances are converted into chl-a and Dvchl-a concentrations, and the simulated vertical chlorophyll profiles are compared to the corresponding experimentally acquir…
Spatio-temporal behaviour of the deep chlorophyll maximum in Mediterranean Sea: Development of a stochastic model for picophytoplankton dynamics
2013
In this paper, by using a stochastic reaction-diffusion-taxis model, we analyze the picophytoplankton dynamics in the basin of the Mediterranean Sea, characterized by poorly mixed waters. The model includes intraspecific competition of picophytoplankton for light and nutrients. The multiplicative noise sources present in the model account for random fluctuations of environmental variables. Phytoplankton distributions obtained from the model show a good agreement with experimental data sampled in two different sites of the Sicily Channel. The results could be extended to analyze data collected in different sites of the Mediterranean Sea and to devise predictive models for phytoplankton dynam…
Monte Carlo analysis of polymer translocation with deterministic and noisy electric fields
2012
AbstractPolymer translocation through the nanochannel is studied by means of a Monte Carlo approach, in the presence of a static or oscillating external electric voltage. The polymer is described as a chain molecule according to the two-dimensional “bond fluctuation model”. It moves through a piecewise linear channel, which mimics a nanopore in a biological membrane. The monomers of the chain interact with the walls of the channel, modelled as a reflecting barrier. We analyze the polymer dynamics, concentrating on the translocation time through the channel, when an external electric field is applied. By introducing a source of coloured noise, we analyze the effect of correlated random fluct…
PICOPHYTOPLANKTON DYNAMICS IN NOISY MARINE ENVIRONMENT
2012
We present a stochastic reaction-diffusion-taxis model to describe the picophytoplankton dynamics along a water column. The model, which is valid for poorly mixed waters, typical of the Mediterranean Sea, considers intraspecific competition of picophytoplankton for light and nutrients. Random fluctuations of environmental variables are taken into account by adding a source of multiplicative noise to the diffusion equation for the picophytoplankton biomass concentration, whose distribution along the water column shows a maximum at a certain depth. After converting our results into chlorophyll a concentrations, we compare theoretical distributions, obtained for different noise intensities, wi…
Stochastic models for phytoplankton dynamics in marine ecosystems
2014
In this thesis, the stochastic advection-reaction-diffusion models are analyzed to obtain the vertical stationary spatial distributions of the main groups of picophytoplankton, which account about for 80% of total chlorophyll on average in Mediterranean Sea. In Chapter 1 we give a short presentation of the experimental and phytoplanktonic data collected during different oceanographic surveys in Mediterranean Sea. In Chapter 2 we introduce the deterministic and stochastic approaches (one-population model) adopted to describe the picoeukaryotes dynamics in Sicily Channel. Moreover, numerical results for the biomass concentration are compared with experimental data by using chi-squared goodnes…