Genetic variability of the blue and red shrimp Aristeus antennatus in the Western Mediterranean Sea inferred by DNA microsatellite loci

Genetic variation at eight microsatellite loci was studied in nine populations of the blue and red shrimp Aristeus antennatus to investigate whether distinct stocks are present in the Western Mediterranean Sea. A high level of gene flow and no evidence of genetic partitioning were discovered. No significant variation was found (FST = 0.00673, P-value = 0.067) even when shrimps from exploited and those from deep-water unexploited grounds were compared. No evidence of reduction or expansion of population size in the recent past was found, as indicated by the bottleneck and interlocus g-tests. Our results are consistent with previous studies using mitochondrial gene methods and allozymes, indi…

DNA-Barcoding to solve the tricky case of co-occuring Sabellaria (ANNELIDA) species in the Mediterranean Sea

Intraspecific morphological variation of key taxonomic features is probably responsible for frequent misidentification of Sabellaria (Lamarck, 1818) species. This is the case of Sabellaria alcocki Gravier, 1906 whose Mediterranean records probably refer to juveniles of S. spinulosa (Leuckart, 1849). We hereby provide molecular tools (DNA barcoding) to improve correct delimitation of the Mediterranean species of this genus.

ENVIRONMENTAL QUALITY OF SOFT-BOTTOM IN HAIFA BAY (ISRAEL): AMPHIPOD ASSEMBLAGES

Ecological information concerning amphipods and representation of their spatial distribution through GIS provides an estimate of local environmental quality.

ALIEN SPECIES: FRIEND OR ENEMY OF ENVIRONMENTAL HEALTH?

Desalination effluents and the establishment of the non-indigenous skeleton shrimp Paracaprella pusilla Mayer, 1890 in the south -eastern Mediterranean

A decade long monitoring programme has revealed a flourishing population of the non-indigenous skeleton shrimp Paracaprella pusilla in the vicinity of outfalls of desalination plants off the Mediterranean coast of Israel. The first specimens were collected in 2010, thus predating all previously published records of this species in the Mediterranean Sea. A decade-long disturbance regime related to the construction and operation of the plants may have had a critical role in driving the population growth. University of Palermo FFR 2018

Biochemical genetic differentiation between Pomatoschistus marmoratus and P. tortonesei

Several diagnostic genetic markers were identified in Pomatoschistus marmoratus and P. tortonesei using polyacrylamide gel electrophoresis (PAGE) of allozymes. Twenty-one loci were resolved, including the electrophoretic pattern of muscle proteins. The MDH*, PGM1,2*, EST-1,2*, FUM* and PGI-2* loci exhibited different alleles which were fixed for the two species being analysed. Genetic distance, as calculated by Nei's index, showed a value of 0.413. Environmental hypersalinity, could have influenced the geographical distribution of P. tortonesei.

Biochemical genetic differentiation between Pomatoschistus marmoratus and P. tortonesei (Pisces, Gobiidae).

Several diagnostic genetic markers were identified in Pomatoschistus marmoratus and P. tortonesei using polyacrylamide gel electrophoresis (PAGE) of allozymes. Twenty-one loci were resolved, including the electrophoretic pattern of muscle proteins. The MDH*, PGM- 1,2*, EST-1,2*, FUM* and PGI-2* loci exhibited different alleles which were fixed for the two species being analysed. Genetic distance, as calculated by Nei’s index, showed a value of 0·413. Environmental hypersalinity, could have influenced the geographical distribution of P. tortonesei.

Mitochondrial simple sequenze repeats and 12s – rRNA gene reveal two distinct lineages of Crocidura russula (Mammalia, Sorcidae)

A short segment (135 bp) of the control region and a partial sequence (394 bp) of the 12S-rRNA gene in the mitochondrial DNA of Crocidura russula were analyzed in order to test a previous hypothesis regarding the presence of a gene flow disruption in northern Africa. This breakpoint would have separated northeast-African C. russula populations from the European (plus the northwest-African) populations. The analysis was carried out on specimens from Tunisia (C. r. cf agilis), Sardinia (C. r. ichnusae), and Pantelleria (C. r. cossyrensis), and on C. r. russula from Spain and Belgium. Two C. russula lineages were identified; they both shared R2 tandem repeated motifs of the same length (12 bp)…

Growth parameters and population structure of Aristeus antennatus (Decapoda, Penaeidae) in the south Tyrrhenian Sea (southern coast of Italy).

Abstract The blue and red shrimp Aristeus antennatus (Risso, 1816) is one of the most important fishery resources in the Mediterranean Sea. Monthly samplings of blue and red shrimp from June 2006 to May 2007 were landed by the trawl fleet in two northwest Sicilian fishing harbours (San Vito Lo Capo and Terrasini). The carapace length (CL) frequency distribution of females ranged between 15.00 and 59.00 mm, whereas male CLs ranged between 17.00 and 34.00 mm. The estimated parameters of the Von Bertalanffy growth function (VBGF) for San Vito lo Capo females and males were: CL∞ = 65 mm, K = 0.58 y–1 and CL∞ = 41 mm, K = 0.71 y–1, respectively; while for Terrasini females and males these were:…

Congruence in genetic markers used to describe Mediterranean and Atlantic populations of European hake (Merluccius merluccius L. 1758)

Summary Eight samples of the hake, Merluccius merluccius L., from the Mediterranean basin (370 fishes total) and one from the Atlantic ocean (50 fishes) were analysed in order to assess genetic variability and describe genetic population structure. Five polymorphic protein coding loci were scored (ADH*, PGI-1*, PGI-2*, PGM* and SOD-1*) in eight samples, together with a haplotype variation of four samples, obtained from polymerase chain reaction/restriction fragment length polymorphism (PCR–RFLP) analysis on the mitochondrial DNA control region. The average value for observed heterozygosity was typically higher than expected (showing an excess of heterozygotes among the samples) whereas the …

Effects of structural complexity on epifaunal assemblages associated with two intertidal Mediterranean seaweeds

Brown foundation seaweeds are key elements increasing substrate heterogeneity and shaping the biodiversity in rocky coastal ecosystems. They are, however, vulnerable species that are declining due to multiple anthropogenic and climate change stressors, leading to a shift to less structural complex habitats. We investigate the role of structural attributes of two intertidal macroalgae, Ericaria amentacea and Laurencia obtusa, in shaping the abundance and diversity of their associated epifaunal assemblages. For this aim, we measured seaweeds’ biomass, thallus volume and length (used here as proxy of substrate complexity), and explored which seaweeds’ substrate attribute explained better varia…

Isolation By Distance (IBD) signals in the deep-water rose shrimp Parapenaeus longirostris (Lucas, 1846) (Decapoda, Panaeidae) in the Mediterranean Sea

Abstract The identification of boundaries of genetic demes is one of the major goals for fishery management, and few Mediterranean commercial species have not been studied from a genetic point of view yet. The deep-water rose shrimp Parapenaeus longirostris (Lucas, 1846) is one of the most important components of commercial landings in Mediterranean, its fishery aspects have received much attention, regrettably without any concern for the genetic architecture of its populations. The population structure in the central and eastern Mediterranean Sea (captures from six Italian and two Greek landings) has been analysed on the basis of surveys carried out with mitochondrial and AFLP markers. Dat…

Genetic variation of the dolphinfish Coryphaena hippurus (Pisces, Coryphaenidae) in the Mediterranean Sea

Molecular diversity of dolphinfish (Coryphaena hippurus) shows the merging of endemic and widespread haplotypes in the Mediterranean Sea

Molecular data on Coryphaena hippurus (Linnaeus, 1758) from western and central Mediterranean Sea were reported and compared. The aim of the study was to study the mitochondrial molecular structuring of the species at different geographical scales: localities, sub-basins, and oceans. Results show the absence of a sharp population structure inside the Mediterranean Sea, and the isolation of the Mediterranean dolphinfishes from those inhabiting the Atlantic Ocean

Impatto di Caulerpa Taxifolia var. Distichophylla su macro- e meiofauna associate a Posidonia oceanica

Macro- and meiofauna associated with Posidonia oceanica meadows colonized by the invasive alga Caulerpa taxifolia var. distichophylla (Caulerpales) in southern Sicily were analyzed and compared with assemblages of control meadows from the same area. Independently from the degree of invasion (severe or partial), the affected macrofaunal assemblages significantly differed from the controls with the former ones characterized by an increase of molluscs and polychaetes and the decrease of crustaceans. Meiofaunal assemblages showed contrasting results being affected by severe algal invasion but not significantly differing from control assemblages under partial invasion conditions, suggesting some…

DNA barcoding of the Mediterranean chondrichthyans (ELASMOMED)

A first snapshot of sandy-beach amphipod (Crustacea) assemblage in a Marine Protected Area, Favignana Island (central Mediterranean Sea)

The aim of this study is to compile a preliminary first check-list of Amphipoda species from beaches of Favignana Island (Sicily, Italy), and contribute to the knowledge relating to the distribution of this taxon in the Mediterranean Sea. Five amphipod species, belonging to two families (Talitridae and Hyalidae), have been collect in the island. The supralittoral assemblage appears to contain three main biogeographical categories: Atlanto-Mediterranean species, Mediterranean endemic species and cosmopolitan species.

New record in the Mediterranean Sea of unusual skin colouration in the black-bellied anglerfishLophius budegassaSpinola, 1807

A Mediterranean record of Eulalia ornata (Annelida: Phyllodocidae) corroborating its fidelity link with the Sabellaria alveolata-reef habitat

Among marine habitats Sabellaria alveolata -reefs deserve protection since they provide important ecosystem services and positive effects on biodiversity. Several marine species are listed among the S. alveolata -reef associated fauna, but characteristic species were seldom reported. Eulalia ornata (Annelida, Phyllodocidae) might represent an exception, since it appears common/abundant in S. alveolata -reefs of the Eastern Atlantic. The most evident geographical mismatch in the distributions of E. ornata and these biogenic reefs occurs in the Mediterranean Sea, where S. alveolata -reefs are commonly found, but E. ornata was never recorded, whilst E. viridis , a non-Mediterranean species, wa…

The 17th International Colloquium on Amphipoda

The 17th International Colloquium on Amphipoda (17th ICA) has been organized by the University of Palermo (Sicily, Italy), and took place in Trapani, 4-7 September 2017. All the contributions have been published in the present monograph and include a wide range of topics.

Protein differences among the Mediterranean species of the genus Spicara.

Protein electrophoresis (PAGE) was used to study the three morphologically different species of Spicara (S. flexuosa, S. maena, S. smaris). Of the 28 enzymatic and additional myogenic loci, five monomorphic loci (LDH-1*, G6PD-1*, PGI-1* and two PMMs*) were species-specific markers of S. smaris with respect to S. flexuosa and S. maena. Four of the 28 enzymatic loci were polymorphic (EST-1*, GLDH*, PEPD*, PGI-2*). Discriminating genetic markers were not identified between S. flexuosa and S. maena. Genetic distance (D) as calculated by Nei’s index (1978), between S. smaris v. S. maena and S. flexuosa showed a value, respectively of D=0·137 and 0·141. Between S. flexuosa and S. maena the value …

Grandidierella bonnieroides Stephensen, 1948 (Amphipoda, Aoridae)-first record of an established population in the Mediterranean Sea

The first record in the Mediterranean Sea of the invasive aorid amphipod crustacean Grandidierella bonnieroides is presented. A widespread circumtropical species, recorded off the Saudi coast of the Arabian Gulf, the Red Sea and the Suez Canal, it may have been introduced into the Mediterranean through the Suez Canal. This tube-builder species of soft bottoms recently established a population in the polluted Haifa Bay, Israel. Further, this is the first Mediterranean record of the genus.

Genetic divergence between morphological forms of brown troutSalmo truttaL. in the Balkan region of Macedonia

The objective of this study was to characterize the genetic structure of two Balkan brown trout morphotypes, Salmo macedonicus and Salmo pelagonicus, and to test whether molecular traits support the species’ status proposed by traditional morphological identification. The mitochondrial DNA 12S-rDNA, cyt b and control region genes were sequenced in 15 specimens collected from three localities in the Former Yugoslav Republic of Macedonia. The results of these markers did not support the taxonomic category of species but confirmed the existence of two morphotypes, Salmo trutta macedonicus and Salmo trutta pelagonicus, in the Aegean–Adriatic lineages of the Salmo trutta species complex.

Electrophoretic study on two morphologically distinguishable populations of Paracentrotus lividus (Echinodermata) from distinct areas of the mediterranean coast.

The Amphipod assemblages of Sabellaria alveolata reefs from the NW coast of Portugal: an account of the present knowledge, new records, and some biogeographic considerations

Amphipod assemblages associated with the biogenic reefs built by the honeycomb worm Sabellaria alveolata were studied at two sites (Praia da Aguda and Belinho) along the northwestern coast of Portugal. A total of 3909 specimens were collected, comprising 14 different amphipod species. A first record from the northeastern Atlantic coast was registered here for the species Caprella santosrosai, which was, up to now, recorded only along the Mediterranean coast of the Iberian Peninsula. A male specimen collected from the Sabellaria-reef located in Belinho allowed an update to the known distribution of C. santosrosai, thus altering its previous status as an endemic Mediterranean species. The mos…

The Stock Genetic Structure of Two Sparidae Species, Diplodus vulgaris and Lithognathus mormyrus, in the Mediterranean Sea.

Abstract Polyacrilamide gel electrophoresis (PAGE) of allozymes was used to investigate the intraspecies genetic variation and the genetic stock structure of Diplodus vulgaris and Lithognathus mormyrus captured from eight localities in the Mediterranean Sea. Twenty-two and 20 putative enzyme-coding loci were examined, respectively, in D. vulgaris and L. mormyrus . Polymorphic loci at the 95% level were used to assess the allozyme variability in D. vulgaris ( AAT-2 ∗ , EST-1 ∗ , GLDH ∗ , PEPB-2 ∗ , PGI-2 ∗ , PGM ∗ , SDH ∗ ) and L. mormyrus ( AAT-2 ∗ , EST-1 ∗ , GLDH ∗ , MDH-2 ∗ , PGI-2 ∗ , PGM ∗ ). The proportion of polymorphic loci in both species ranged from 0.31 ( D. vulgaris ) to 0.30 ( …

Allozyme Similarity in Two Morphologically Distinguishable Populations ofParacentrotus Lividus(Echinodermata) From Distinct Areas of the Mediterranean Coast

Allozymes ofParacentrotus lividusfrom Palermo Gulf in the northern Sicilian coast (Italy) and from a small body-size population in the western Greek coast (Ionian Sea) were investigated by PAGE. Five of the twenty examined loci were polymorphic(AAT*, ADH*, ME*, PGI*andPGM*)over each population with a polymorphism value of 0–25. Average heterozygosity was equal to 0081 in the Sicilian sample and 0084 in the Greek. Deviations from Hardy-Weinberg equilibrium were significant inME*andPGI*loci (as calculated byy).Nei's (1978) genetic distance (D=0–0025) index described a close identity between the two samples. FSTvalue of polymorphic loci ranged from 0001 to 0029, its mean value (0–008) resultin…

A mitochondrial phylogeography of Brachidontes variabilis (Bivalvia: Mytilidae) reveals three cryptic species

This study examined genetic variation across the range of Brachidontes variabilis to produce a molecular phylogeography. Neighbour joining (NJ), minimum evolution (ME) and maximum parsimony (MP) trees based on partial mitochondrial DNA sequences of 16S-rDNA and cytochrome oxidase (COI) genes revealed three monophyletic clades: (1) Brachidontes pharaonis s.l. from the Mediterranean Sea and the Red Sea; (2) B. variabilis from the Indian Ocean; (3) B. variabilis from the western Pacific Ocean. Although the three clades have never been differentiated by malacologists employing conventional morphological keys, they should be ascribed to the taxonomic rank of species. The nucleotide divergences b…

Growth and reproduction data of Plesionika narval (Decapoda, Caridea, Pandalidae) off the Island of Ustica (southern Tyrrhenian Sea)

[We here report some data on the biology and population structure of Plesionika narval (Fabricius, 1787) captured along the coast of the island of Ustica in the southern Tyrrhenian Sea. Specimens were collected monthly from January to October 2000 using commercial traps at depths ranging from 15 to 100 metres. The carapace length (CL) of females ranged between 7.0 and 26.0 mm, and between 7.0 and 17.0 mm for males. Three modes were identified in the cumulative frequency distribution for females but only two for males. In females, the third modal value was observed only at the deeper sample sites. The Von Bertalanffy growth parameters and performance index p were K = 0.65 y–1, CL∞ = 27.4 mm …