0000000000207833

AUTHOR

Silvia Giménez-santamarina

0000-0001-8021-4348

showing 9 related works from this author

Data-driven design of molecular nanomagnets

2022

AbstractThree decades of research in molecular nanomagnets have raised their magnetic memories from liquid helium to liquid nitrogen temperature thanks to a wise choice of the magnetic ion and coordination environment. Still, serendipity and chemical intuition played a main role. In order to establish a powerful framework for statistically driven chemical design, here we collected chemical and physical data for lanthanide-based nanomagnets, catalogued over 1400 published experiments, developed an interactive dashboard (SIMDAVIS) to visualise the dataset, and applied inferential statistical analysis. Our analysis shows that the Arrhenius energy barrier correlates unexpectedly well with the m…

MagneticsMultidisciplinaryTemperatureGeneral Physics and AstronomyQuímicaGeneral ChemistryLigandsLanthanoid Series ElementsGeneral Biochemistry Genetics and Molecular BiologyNature Communications
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Data mining, dashboard and statistical analysis: a powerful framework for the chemical design of molecular nanomagnets

2021

Three decades of research in molecular nanomagnets have raised their magnetic memories from liquid helium to liquid nitrogen temperature thanks to a wise choice of the magnetic ion and coordination environment. Still, serendipity and chemical intuition played a main role. In order to establish a powerful framework for statistically driven chemical design, we collected chemical and physical data for lanthanide-based nanomagnets, catalogued over 1400 published experiments, developed an interactive dashboard (SIMDAVIS) to visualise the dataset, and applied inferential statistical analysis. Our analysis showed that the Arrhenius energy barrier correlates unexpectedly well with the magnetic memo…

Condensed Matter - Mesoscale and Nanoscale PhysicsMesoscale and Nanoscale Physics (cond-mat.mes-hall)FOS: Physical sciences
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Molecular signatures of silencing suppression degeneracy from a complex RNA virus

2021

As genomic architectures become more complex, they begin to accumulate degenerate and redundant elements. However, analyses of the molecular mechanisms underlying these genetic architecture features remain scarce, especially in compact but sufficiently complex genomes. In the present study, we followed a proteomic approach together with a computational network analysis to reveal molecular signatures of protein function degeneracy from a plant virus (as virus-host protein-protein interactions). We employed affinity purification coupled to mass spectrometry to detect several host factors interacting with two proteins of Citrus tristeza virus (p20 and p25) that are known to function as RNA sil…

0106 biological sciences0301 basic medicineProteomicsCitrusInteraction NetworksPathogenesisPlant Sciencemedicine.disease_causePathology and Laboratory Medicine01 natural sciencesInteractomeBiochemistryBimolecular fluorescence complementationRNA interferenceRNA silencing supressorsCitrus tristeza virusMedicine and Health SciencesDegeneracy (biology)Protein Interaction MapsBiology (General)H20 Plant diseasesPlant ProteinsEcologybiologyPlant virusesEukaryotaArgonautePlantsSmall interfering RNANucleic acidsRNA silencingComputational Theory and MathematicsGenetic interferenceExperimental Organism SystemsModeling and SimulationProteomeArgonaute ProteinsHost-Pathogen InteractionsRNA ViralEpigeneticsResearch ArticleClosterovirusRNA virusViral proteinQH301-705.5Arabidopsis ThalianaPlant PathogensComputational biologyGenome ViralBrassicaResearch and Analysis MethodsModels BiologicalPlant Viral Pathogens03 medical and health sciencesCellular and Molecular NeuroscienceViral ProteinsModel OrganismsPlant and Algal ModelsTobaccomedicineGeneticsGenomesNon-coding RNAProtein InteractionsMolecular signaturesMolecular BiologyEcology Evolution Behavior and SystematicsPlant DiseasesHost Microbial InteractionsBiology and life sciencesMass spectrometryOrganismsComputational BiologyProteinsRNA virusPlant Pathologybiology.organism_classificationGene regulationRepressor Proteins030104 developmental biologyU30 Research methodsAnimal StudiesRNAGene expression010606 plant biology & botanyF30 Plant genetics and breeding
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Towards peptide-based tunable multistate memristive materials

2021

Development of new memristive hardware is a technological requirement towards widespread neuromorphic computing. Molecular spintronics seems to be a fertile field for the design and preparation of this hardware. Within molecular spintronics, recent results on metallopeptides demonstrating the interaction between paramagnetic ions and the chirality induced spin selectivity effect hold particular promise for developing fast (ns–μs) operation times. [R. Torres-Cavanillas et al., J. Am. Chem. Soc., 2020, DOI: 10.1021/jacs.0c07531]. Among the challenges in the field, a major highlight is the difficulty in modelling the spin dynamics in these complex systems, but at the same time the use of inexp…

SpintronicsSpin dynamicsBase SequenceComputer scienceUNESCO::QUÍMICAComplex systemGeneral Physics and AstronomyNanotechnology02 engineering and technologyMemristor010402 general chemistry021001 nanoscience & nanotechnology01 natural sciencesLanthanoid Series Elements:QUÍMICA [UNESCO]0104 chemical scienceslaw.inventionNeuromorphic engineeringlawMetalloproteinsAmino Acid SequenceNeural Networks ComputerPhysical and Theoretical Chemistry0210 nano-technologyPeptides
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Lanthanide molecular nanomagnets as probabilistic bits

2023

Abstract Over the decades, the spin dynamics of a large set of lanthanide complexes have been explored. Lanthanide-based molecular nanomagnets are bistable spin systems, generally conceptualized as classical bits, but many lanthanide complexes have also been presented as candidate quantum bits (qubits). Here we offer a third alternative and model them as probabilistic bits (p-bits), where their stochastic behavior constitutes a computational resource instead of a limitation. We present a modelling tool for molecular spin p-bits, we demonstrate its capability to simulate bulk magnetic relaxation data and ac experiments and to simulate a minimal p-bit network under realistic conditions. Final…

Condensed Matter - Mesoscale and Nanoscale PhysicsMesoscale and Nanoscale Physics (cond-mat.mes-hall)FOS: Physical sciences
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Exploiting Clock Transitions for the chemical design of resilient molecular spin qubits

2021

Molecular spin qubits are chemical nanoobjects with promising applications that are so far hampered by the rapid loss of quantum information, a process known as decoherence. A strategy to improve this situation involves employing so-called Clock Transitions (CTs), which arise at anticrossings between spin energy levels. At CTs, the spin states are protected from magnetic noise and present an enhanced quantum coherence. Unfortunately, these optimal points are intrinsically hard to control since their transition energy cannot be tuned by an external magnetic field; moreover, their resilience towards geometric distortions has not yet been analyzed. Here we employ a python-based computational t…

PhysicsQuantum decoherenceSpin statesPulsed EPRQuàntums Teoria dels02 engineering and technologyGeneral ChemistryQuímica010402 general chemistry021001 nanoscience & nanotechnology01 natural sciences3. Good health0104 chemical sciencesChemistryQuantum mechanicsQubitQuantum information0210 nano-technologyQuantumMultipletHyperfine structureChemical Science
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Reinforced Room-Temperature Spin Filtering in Chiral Paramagnetic Metallopeptides

2020

Chirality-induced spin selectivity (CISS), whereby helical molecules polarize the spin of electrical current, is an intriguing effect with potential applications in nanospintronics. In this nascent field, the study of the CISS effect using paramagnetic chiral molecules, which could introduce another degree of freedom in controlling the spin transport, remains so far unexplored. To address this challenge, herein we propose the use of self-assembled monolayers (SAMs) of helical lanthanide-binding peptides. To elucidate the effect of the paramagnetic nuclei, monolayers of the peptide coordinating paramagnetic or diamagnetic ions are prepared. By means of spin-dependent electrochemistry, the CI…

Surface PropertiesFOS: Physical sciencesApplied Physics (physics.app-ph)02 engineering and technology010402 general chemistryLanthanoid Series Elements01 natural sciencesBiochemistryCatalysisElectron TransportParamagnetismColloid and Surface ChemistryElectrical currentMesoscale and Nanoscale Physics (cond-mat.mes-hall)ElectrochemistryOrganometallic CompoundsMoleculeAmino Acid SequenceSpin-½Spin filteringCondensed Matter - Mesoscale and Nanoscale PhysicsCondensed matter physicsChemistryElectron Spin Resonance SpectroscopyTemperatureStereoisomerismPhysics - Applied PhysicsGeneral Chemistry021001 nanoscience & nanotechnology0104 chemical sciencesModels ChemicalCondensed Matter::Strongly Correlated ElectronsGoldPeptides0210 nano-technologySelectivityJournal of the American Chemical Society
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Exploring the transport properties of equatorially low coordinated erbium single ion magnets

2019

Single-molecule spin transport represents the lower limit of miniaturization of spintronic devices. These experiments, although extremely challenging, are key to understand the magneto-electronic properties of a molecule in a junction. In this context, theoretical screening of new magnetic molecules provides invaluable knowledge before carrying out sophisticated experiments. Herein, we investigate the transport properties of three equatorially low-coordinated erbium single ion magnets with C3v symmetry: Er[N(SiMe3⁠)2⁠]3⁠ (1), Er(btmsm)3⁠ (2) and Er(dbpc)3⁠ (3), where btmsm=bis(trimethylsilyl)methyl and dbpc=2,6-di-tert-butyl-p-cresolate. Our ligand field analysis, based on previous spectros…

010302 applied physicsLigand field theoryMaterials scienceCondensed Matter - Mesoscale and Nanoscale PhysicsSpintronicschemistry.chemical_elementFOS: Physical sciences02 engineering and technology021001 nanoscience & nanotechnologyCondensed Matter Physics01 natural sciencesElectronic Optical and Magnetic MaterialsMagnetic fieldErbiumchemistryChemical physicsMagnet0103 physical sciencesMesoscale and Nanoscale Physics (cond-mat.mes-hall)MiniaturizationMolecule0210 nano-technologyGround state
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Theoretical insights on the importance of anchoring vs molecular geometry in magnetic molecules acting as junctions

2019

The anchoring of the molecule to an electrode is known to be a key factor in single-molecule spintronics experiments. Likewise, a relaxation down to the most stable geometry is a critical step in theoretical simulations of transport through single-molecule junctions. Herein we present a set of calculations designed to analyze and compare the effect of different anchoring points and the effect of perturbations in the molecular geometry and interelectrode distance. As model system we chose the [V($\alpha$-C$_3$S$_5$)$_3$]$^{2-}$ complex connecting two Au(111) electrodes in a slightly compressed geometry. In our calculations, the attachment happens through an S-Au bond, a common anchoring stra…

010302 applied physicsMaterials scienceCondensed Matter - Mesoscale and Nanoscale PhysicsSpintronicsRelaxation (NMR)AnchoringConductanceFOS: Physical sciences02 engineering and technology021001 nanoscience & nanotechnologyCondensed Matter Physics01 natural sciencesElectronic Optical and Magnetic MaterialsMolecular geometryChemical physicsPosition (vector)0103 physical sciencesElectrodeMesoscale and Nanoscale Physics (cond-mat.mes-hall)Molecule0210 nano-technology
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