0000000000356874
AUTHOR
Marcello A. Mannino
Ten millennia of hepatitis B virus evolution
Hepatitis B virus (HBV) has been infecting humans for millennia and remains a global health problem, but its past diversity and dispersal routes are largely unknown. We generated HBV genomic data from 137 Eurasians and Native Americans dated between ~10,500 and ~400 years ago. We date the most recent common ancestor of all HBV lineages to between ~20,000 and 12,000 years ago, with the virus present in European and South American hunter-gatherers during the early Holocene. After the European Neolithic transition, Mesolithic HBV strains were replaced by a lineage likely disseminated by early farmers that prevailed throughout western Eurasia for ~4000 years, declining around the end of the 2nd…
Using Y-chromosome capture enrichment to resolve haplogroup H2 shows new evidence for a two-path Neolithic expansion to Western Europe
Uniparentally-inherited markers on mitochondrial DNA (mtDNA) and the non-recombining regions of the Y chromosome (NRY), have been used for the past 30 years to investigate the history of humans from a maternal and paternal perspective. Researchers have preferred mtDNA due to its abundance in the cells, and comparatively high substitution rate. Conversely, the NRY is less susceptible to back mutations and saturation, and is potentially more informative than mtDNA owing to its longer sequence length. However, due to comparatively poor NRY coverage via shotgun sequencing, and the relatively low and biased representation of Y-chromosome variants on capture assays such as the 1240 k, ancient DNA…
New chronology for Ksâr ‘Akil (Lebanon) supports Levantine route of modern human dispersal into Europe
Modern human dispersal into Europe is thought to have occurred with the start of the Upper Paleolithic around 50,000-40,000 y ago. The Levantine corridor hypothesis suggests that modern humans from Africa spread into Europe via the Levant. Ksâr 'Akil (Lebanon), with its deeply stratified Initial (IUP) and Early (EUP) Upper Paleolithic sequence containing modern human remains, has played an important part in the debate. The latest chronology for the site, based on AMS radiocarbon dates of shell ornaments, suggests that the appearance of the Levantine IUP is later than the start of the first Upper Paleolithic in Europe, thus questioning the Levantine corridor hypothesis. Here we report a seri…
New perspectives on the human occupation of the Gulf of Palermo during the Metal Ages: the funerary cave of Zubbio di Cozzo San Pietro (Bagheria) and the necropolis of Viale Venere (Mondello, Palermo)
Abstract The Archaeological Superintendency of Palermo (Sicily), with the chair of Anthropology at the University of Palermo, carried out a preliminary investigation in the Zubbio of Cozzo San Pietro (Bagheria) – a cave known so far only from a speleological point of view - which proved to be a funerary cave dating to the Copper/Bronze Age. In the course of archaeological work during the installation of the electricity grid in the Mondello area (Palermo), part of a necropolis consisting of three oven-shaped tombs was exposed. The tombs multiple depositions, whose remains were found in a very bad state of preservation. Based on the type of funerary structures and the equipment found in them,…
Reply to Douka et al: Critical evaluation of the Ksâr 'Akil chronologies
Our paper (1) proposes a new chronology for Ksâr 'Akil based on 16 accelerator mass spectrometry (AMS) determinations on shells. To minimize the possibility of dating diagenetically compromised samples, we conducted amino acid racemization analyses on the intracrystalline proteins, oxygen isotope analysis, and geochemical characterization of all dated shells. Our calibrated radiocarbon ages fit well with existing Levantine chronologies, but are up to 4,000 y older than Douka et al.’s (2). Our paper explores several possibilities for this difference, whereas Douka et al. (3) provide alternative explanations. They accept our radiocarbon ages as correct but question our sample selection and Ba…
Upper Palaeolithic hunter-gatherer subsistence in Mediterranean coastal environments: an isotopic study of the diets of earliest directlyt-dated humans from Sicily
Abstract The subsistence of hunter-gatherers in the Mediterranean Basin has been the object of few studies, which have not fully clarified the role of aquatic resources in their diets. Here we present the results of AMS radiocarbon dating and of isotope analyses on the earliest directly-dated human remains from Sicily, the largest island in the Mediterranean Sea. The radiocarbon determinations show that the Upper Palaeolithic (Epigravettian) humans from Grotta di San Teodoro (15 232–14 126 cal. BP) and Grotta Addaura Caprara (16 060–15 007 cal. BP) date to the Late-glacial and were possibly contemporary. The diets of these individuals were dominated by the protein of large terrestrial mamma…