0000000000420620

AUTHOR

Jean Weissenbach

showing 3 related works from this author

Annotation of microsporidian genomes using transcriptional signals

2012

EA GenoSol CT3; International audience; High-quality annotation of microsporidian genomes is essential for understanding the biological processes that govern the development of these parasites. Here we present an improved structural annotation method using transcriptional DNA signals. We apply this method to re-annotate four previously annotated genomes, which allow us to detect annotation errors and identify a significant number of unpredicted genes. We then annotate the newly sequenced genome of Anncaliia algerae. A comparative genomic analysis of A. algerae permits the identification of not only microsporidian core genes, but also potentially highly expressed genes encoding membrane-asso…

Transcription Geneticgenome annotationMESH : Molecular Sequence AnnotationGeneral Physics and AstronomyMESH: PhosphotransferasesGenometranscriptional signalMESH : Protein TransportMESH : Fungal ProteinsDNA FungalConserved SequenceComputingMilieux_MISCELLANEOUSGenetics0303 health sciencesFungal proteinMESH: Conserved SequenceMultidisciplinaryMESH: Genomics030302 biochemistry & molecular biologyGenomicsGenome projectProtein TransportMolecular Sequence Annotation[ SDV.BBM.GTP ] Life Sciences [q-bio]/Biochemistry Molecular Biology/Genomics [q-bio.GN]MESH: Genome FungalMESH: Fungal ProteinsMESH : PhosphotransferasesGenome FungalTransposable elementMESH: Protein TransportGenes FungalGenomicsMESH: Molecular Sequence AnnotationMESH : MicrosporidiaMESH : Open Reading FramesComputational biologyBiologyGeneral Biochemistry Genetics and Molecular BiologyFungal ProteinsOpen Reading Frames03 medical and health sciencesMESH : Conserved Sequence[SDV.BBM.GTP]Life Sciences [q-bio]/Biochemistry Molecular Biology/Genomics [q-bio.GN]Anncaliia algeraeparasitic diseasesGene030304 developmental biologybioinformaticMESH: Transcription GeneticMESH : Genome FungalPhosphotransferasesstructural annotationMESH : GenomicsfungiMESH : Transcription GeneticMolecular Sequence AnnotationGeneral ChemistryMESH: Open Reading FramesMESH: MicrosporidiaMESH: DNA FungalmicrosporidiaMESH : Genes Fungal[INFO.INFO-BI]Computer Science [cs]/Bioinformatics [q-bio.QM]MESH : DNA FungalMESH: Genes FungalNature Communications
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Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana.

2000

Arabidopsis thaliana is an important model system for plant biologists. In 1996 an international collaboration (the Arabidopsis Genome Initiative) was formed to sequence the whole genome of Arabidopsis and in 1999 the sequence of the first two chromosomes was reported. The sequence of the last three chromosomes and an analysis of the whole genome are reported in this issue. Here we present the sequence of chromosome 3, organized into four sequence segments (contigs). The two largest (13.5 and 9.2 Mb) correspond to the top (long) and the bottom (short) arms of chromosome 3, and the two small contigs are located in the genetically defined centromere. This chromosome encodes 5,220 of the rough…

DNA PlantSequence analysisArabidopsisplantGenomeComplete sequenceArabidopsisGene DuplicationCentromerePlant genomics; model organismHumansgenomic structureGenemodel organismPlant ProteinsGeneticsMultidisciplinarybiologyChromosomeChromosome MappingSequence Analysis DNAbiology.organism_classificationPlant genomicsgenome sequencingChromosome 3plant; genome sequencing; genomic structureGenome Plant
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Linkage studies of bipolar disorder in the region of the Darier's disease gene on chromosome 12q23-24.1.

1995

We have recently described a family in which there is cosegregation of major affective disorder with Darier's disease and have mapped this autosomal dominant skin disorder to 12q23-q24.1. This has provided an interesting candidate region for genetic studies of bipolar disorder. We have studied the segregation of seven markers spanning the Darier's disease locus in 45 bipolar disorder pedigrees and found modest evidence in support of linkage under heterogeneity for 5 of these markers. Nonparametric analyses were suggestive of linkage with a marker at the gene encoding a secretory form of phospholipase A2. Our sample has relatively low power to detect linkage under heterogeneity and independe…

Genetic MarkersMaleCandidate geneBipolar DisorderCosegregationGenotypeGenetic LinkageLocus (genetics)BiologyPhospholipases AGene mappingDarier DiseaseGenetic linkageDarier's diseasemedicineHumansBipolar disorderGenetics (clinical)AllelesGenes DominantGeneticsChromosomes Human Pair 12Chromosome Mappingmedicine.diseasePedigreePhospholipases A2FemaleLod ScoreDarier DiseaseAmerican journal of medical genetics
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