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RESEARCH PRODUCT
Code Interoperability and Standard Data Formats in Quantum Chemistry and Quantum Dynamics: The Q5/Q5cost Data Model
Antonio MonariStefano EvangelistiCelestino AngeliSergio RampinoAttila TajtiRenzo CimiragliaPéter G. SzalayJosé Sánchez-marínAnthony ScemamaPeter KallayKim K. BaldridgeKenneth RuudHans Peter LüthiAntonio LaganàMarco VerdicchioMarco VerdicchioGian Luigi BendazzoliStefano BoriniElda Rossisubject
Theoretical computer scienceGrid ComputingComputer scienceDistributed computingInteroperability010402 general chemistrycomputer.software_genre01 natural sciencesData typegrid computingData modelingquantum chemistryquantum dynamicQuantum DynamicsCode interoperability0103 physical sciencesprogram interoperabilityCommon Data FormatComputingMilieux_MISCELLANEOUSdata format010304 chemical physicsChemistry (all)General ChemistryQuantum ChemistryGridData Format0104 chemical sciences[CHIM.THEO]Chemical Sciences/Theoretical and/or physical chemistryComputational MathematicsGrid computingData modelProof of conceptcomputerCode interoperability; Quantum Chemistry; Quantum Dynamics; Data Format; Grid Computingdescription
Code interoperability and the search for domain-specific standard data formats represent critical issues in many areas of computational science. The advent of novel computing infrastructures such as computational grids and clouds make these issues even more urgent. The design and implementation of a common data format for quantum chemistry (QC) and quantum dynamics (QD) computer programs is discussed with reference to the research performed in the course of two Collaboration in Science and Technology Actions. The specific data models adopted, Q5Cost and D5Cost, are shown to work for a number of interoperating codes, regardless of the type and amount of information (small or large datasets) to be exchanged. The codes are either interfaced directly, or transfer data by means of wrappers; both types of data exchange are supported by the Q5/D5Cost library. Further, the exchange of data between QC and QD codes is addressed. As a proof of concept, the H + H2 reaction is discussed. The proposed scheme is shown to provide an excellent basis for cooperative code development, even across domain boundaries. Moreover, the scheme presented is found to be useful also as a production tool in the grid distributed computing environment. © 2013 Wiley Periodicals, Inc.
year | journal | country | edition | language |
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2014-03-01 | J. Comput. Chem. |