Search results for " Biophysics"

showing 10 items of 136 documents

Host–guest complexes of conformationally flexible C-hexyl-2-bromoresorcinarene and aromatic N-oxides: solid-state, solution and computational studies

2018

Host–guest complexes of C-hexyl-2-bromoresorcinarene (BrC6) with twelve potential aromatic N-oxide guests were studied using single crystal X-ray diffraction analysis and 1H NMR spectroscopy. In the solid state, of the nine obtained X-ray crystal structures, eight were consistent with the formation of BrC6-N-oxide endo complexes. The lone exception was from the association between 4-phenylpyridine N-oxide and BrC6, in that case the host forms a self-inclusion complex. BrC6, as opposed to more rigid previously studied C-ethyl-2-bromoresorcinarene and C-propyl-2-bromoresorcinarene, undergoes remarkable cavity conformational changes to host different N-oxide guests through C–H···π(host) intera…

Solid-stateCrystal structure010402 general chemistry01 natural scienceslcsh:QD241-441lcsh:Organic chemistryPolarizabilitysupramolekulaarinen kemiaresorcinareneshost–guest chemistryHost–guest chemistrylcsh:Scienceta116Biochemistry Biophysics and Structural BiologyC–H···π Interactions010405 organic chemistryChemistryOrganic Chemistryendo/exo complexationSolution phaseditopic receptors0104 chemical sciencesaromatic N-oxidesChemistryCrystallographyProton NMRPolarlcsh:QSingle crystalBeilstein Journal of Organic Chemistry
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Chemically driven phase separation in black lipid membranes and its coupling to membrane functions

1992

Abstract We analysed the single-channel current fluctuations of gramicidin in bimolecular lipid membranes in order to demonstrate (i) the influence of protein binding to the lateral organisation of a mixed membrane, and (ii) how this couples to the function of the ionophore. Examples of phase separations induced by synthetic polyelectrolytes, as models for peripheral membrane proteins, and specific ligand-receptor interactions are presented and discussed in view of the important lateral order-function relationship in biomembranes.

StereochemistryChemistryPeripheral membrane proteinLipid microdomainMetals and AlloysSynthetic membraneBiological membraneSurfaces and InterfacesPolar membraneSurfaces Coatings and FilmsElectronic Optical and Magnetic MaterialsOrientations of Proteins in Membranes databaseMembraneMaterials ChemistryBiophysicsMembrane biophysicsThin Solid Films
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Size influences the effect of hydrophobic nanoparticles on lung surfactant model systems

2013

Item does not contain fulltext The alveolar lung surfactant (LS) is a complex lipid protein mixture that forms an interfacial monolayer reducing the surface tension to near zero values and thus preventing the lungs from collapse. Due to the expanding field of nanotechnology and the corresponding unavoidable exposure of human beings from the air, it is crucial to study the potential effects of nanoparticles (NPs) on the structural organization of the lung surfactant system. In the present study, we investigated both, the domain structure in pure DPPC monolayers as well as in lung surfactant model systems. In the pure lipid system we found that two different sized hydrophobic polymeric nanopa…

Systems BiophysicsPhase transitionPulmonary Surfactant-Associated ProteinsMaterials science12-DipalmitoylphosphatidylcholineSwineVesicleBiophysicstechnology industry and agricultureNanoparticleMembranes ArtificialNanotechnologyBiological membraneModels BiologicalPhase TransitionSurface tensionPulmonary surfactantChemical engineeringPhase (matter)MonolayerAnimalsNanoparticlesHydrophobic and Hydrophilic InteractionsNanomedicine Radboud Institute for Molecular Life Sciences [Radboudumc 19]
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Fibronectin-bound α5β1 integrins sense load and signal to reinforce adhesion in less than a second

2017

Integrin-mediated mechanosensing of the extracellular environment allows cells to control adhesion and signalling. Whether cells sense and respond to force immediately upon ligand-binding is unknown. Here, we report that during adhesion initiation, fibroblasts respond to mechanical load by strengthening integrin-mediated adhesion to fibronectin (FN) in a biphasic manner. In the first phase, which depends on talin and kindlin as well as on the actin nucleators Arp2/3 and mDia, FN-engaged α5β1 integrins activate focal adhesion kinase (FAK) and c-Src in less than 0.5 s to steeply strengthen α5β1- and αV-class integrin-mediated adhesion. When the mechanical load exceeds a certain threshold, fib…

Talin0301 basic medicineTime FactorsMaterials scienceIntegrinNanotechnologyMechanotransduction CellularActin-Related Protein 2-3 ComplexCSK Tyrosine-Protein KinaseFocal adhesionMice03 medical and health sciencesCell AdhesionAnimalsGeneral Materials ScienceMechanotransductionCell adhesionActinMice KnockoutbiologyCell adhesion moleculeMechanical EngineeringGeneral ChemistryAdhesionFibroblastsCondensed Matter PhysicsFibronectinsCell biologyFibronectinsrc-Family Kinases030104 developmental biologyMechanics of MaterialsFocal Adhesion Kinase 1biology.proteinApplications of AFM; integrins; Mechanotransduction; Microscopy; Nanoscale biophysicsIntegrin alpha5beta1Nature Materials
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Cholesterol Modulates the Interaction of β-Amyloid Peptide with Lipid Bilayers

2009

The interaction of an amphiphilic, 40-amino acid beta-amyloid (Abeta) peptide with liposomal membranes as a function of sterol mole fraction (X(sterol)) was studied based on the fluorescence anisotropy of a site-specific membrane sterol probe, dehydroergosterol (DHE), and fluorescence resonance energy transfer (FRET) from the native Tyr-10 residue of Abeta to DHE. Without Abeta, peaks or kinks in the DHE anisotropy versus X(sterol) plot were detected at X(sterol) approximately 0.25, 0.33, and 0.53. Monomeric Abeta preserved these peaks/kinks, but oligomeric Abeta suppressed them and created a new DHE anisotropy peak at X(sterol) approximately 0.38. The above critical X(sterol) values coinci…

Time FactorsLipid BilayersMolecular Sequence DataBiophysicsPeptideFluorescence Polarization7. Clean energy03 medical and health scienceschemistry.chemical_compound0302 clinical medicineAlzheimer DiseaseErgosterolFluorescence Resonance Energy TransferAmino Acid SequenceLipid bilayer030304 developmental biologychemistry.chemical_classification0303 health sciencesLiposomeAmyloid beta-PeptidesChemistryCholesterolSterolPeptide FragmentsCrystallographyFörster resonance energy transferMembraneCholesterolCell BiophysicsTyrosinelipids (amino acids peptides and proteins)030217 neurology & neurosurgeryFluorescence anisotropyProtein BindingBiophysical Journal
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Brain lateralization probed by water diffusion at the atomic to micrometric scale

2019

International audience; Combined neutron scattering and diffusion nuclear magnetic resonance experiments have been used to reveal significant interregional asymmetries (lateralization) in bovine brain hemispheres in terms of myelin arrangement and water dynamics at micron to atomic scales. Thicker myelin sheaths were found in the left hemisphere using neutron diffraction. 4.7 T dMRI and quasi-elastic neutron experiments highlighted significant differences in the properties of water dynamics in the two hemispheres. The results were interpreted in terms of hemisphere-dependent cellular composition (number of neurons, cell distribution, etc.) as well as specificity of neurological functions (s…

[SDV.IB.IMA]Life Sciences [q-bio]/Bioengineering/Imagingbrain[SDV.NEU.NB]Life Sciences [q-bio]/Neurons and Cognition [q-bio.NC]/Neurobiologylcsh:MedicineFacilitated DiffusionArticleCerebellumScattering Small AngleAnimalslcsh:ScienceDominance CerebralCerebrumMyelin SheathQuantitative Biology::Neurons and Cognitionneutron scatteringlcsh:RWaterwater diffusionMolecular biophysicsSettore FIS/07 - Fisica Applicata(Beni Culturali Ambientali Biol.e Medicin)neutron scattering diffusion nuclear magnetic resonance water dynamicsNeutron DiffractionDiffusion Magnetic Resonance Imaginglcsh:QCattleAstrophysics::Earth and Planetary AstrophysicsBiological physicsScientific Reports
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An insect brain computational model inspired by Drosophila melanogaster: architecture description

2010

The fruit fly Drosophila melanogaster is an extremely interesting insect because it shows a wealth of complex behaviors, despite its small brain. Nowadays genetic techniques allow to knock out the function of defined parts or genes in the Drosophila brain. Together with specific mutants which show similar defects in those parts or genes, hypothesis about the functions of every single brain part can be drawn. Following these experiments, a computational model of the fly Drosophila has been designed with a view to its robotic implementation.

biologymedia_common.quotation_subjectfungiSmall brainBrain PartComputational biologyInsectbiology.organism_classificationDrosophila melanogasterDrosophilaSoftware architecture descriptionFunction (biology)Cellular biophysicsmedia_common
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Protein dynamical transition vs. liquid-liquid phase transition in protein hydration water

2013

In this work, we compare experimental data on myoglobin hydrated powders from elastic neutron scattering, broadband dielectric spectroscopy, and differential scanning calorimetry. Our aim is to obtain new insights on the connection between the protein dynamical transition, a fundamental phenomenon observed in proteins whose physical origin is highly debated, and the liquid-liquid phase transition (LLPT) possibly occurring in protein hydration water and related to the existence of a low temperature critical point in supercooled water. Our results provide a consistent thermodynamic/dynamic description which gives experimental support to the LLPT hypothesis and further reveals how fundamental …

biothermics critical points liquid-liquid transformations molecular biophysics proteins solvation supercooling waterSettore FIS/07 - Fisica Applicata(Beni Culturali Ambientali Biol.e Medicin)
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Bringing a Molecular Plus One: Synergistic Binding Creates Guest-Mediated Three-Component Complexes

2020

Cethyl-2-methylresorcinarene (A), pyridine (B), and a set of 10 carboxylic acids (Cn) associate to form A·B·Cn ternary assemblies with 1:1:1 stoichiometry, representing a useful class of ternary systems where the guest mediates complex formation between the host and a third component. Although individually weak in solution, the combined strength of the multiple noncovalent interactions organizes the complexes even in a highly hydrogen-bond competing methanol solution, as explored by both experimental and computational methods. The interactions between A·B and Cn are dependent on the pKa values of carboxylic acids. The weak interactions between A and C further reinforce the interactions betw…

chemistry.chemical_classification010405 organic chemistryStereochemistryComponent (thermodynamics)Organic ChemistryComplex formationCarboxylic AcidsCooperative bindingHydrogen Bonding010402 general chemistry01 natural sciences0104 chemical sciencesChemistrychemistry.chemical_compoundMolecular recognitionchemistryPyridineNon-covalent interactionsTernary operationBiochemistry Biophysics and Structural BiologyStoichiometryThe Journal of Organic Chemistry
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Host-guest complexes of C-propyl-2-bromoresorcinarene with aromatic N-oxides*

2018

The host-guest complexes of C-propyl-2-bromoresorcinarene with pyridine N-oxide, 3-methylpyridine N-oxide, quinoline N-oxide and isoquinoline N-oxide are studied using single crystal X-ray crystallography and 1H NMR spectroscopy. The C-propyl-2-bromoresorcinarene forms endo-complexes with the aromatic N-oxides in the solid-state when crystallised from either methanol or acetone. In solution, the endo-complexes were observed only in methanol-d4. In DMSO the solvent itself is a good guest, and crystallisation provides only solvate endo-complexes. The C-propyl-2-bromoresorcinarene shows remarkable flexibility when crystallised from either methanol or acetone, and packs into one-dimensional sel…

crystal structurekemiaSupramolecular chemistryCrystal structurechemistry010402 general chemistry01 natural scienceschemistry.chemical_compoundPolymer chemistryPyridinecrystalssupramolekulaarinen kemiaAcetoneresorcinarenesmoleculesIsoquinolineta116Biochemistry Biophysics and Structural Biologyvetysidoksetta114010405 organic chemistryHydrogen bondQuinolinemolekyylitGeneral Chemistrykiteet0104 chemical sciencesaromatic N-oxidesSolventChemistrychemistryvetyhydrogenhydrogen bondsSupramolecular chemistrySUPRAMOLECULAR CHEMISTRY
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