Search results for " MODELS"

showing 10 items of 4240 documents

Effects of a mobile disturbance pattern on dynamic patch networks and metapopulation persistence

2021

Abstract Motivation Certain early-succession habitats may emerge only at restricted locations following disturbance. Therefore, whether disturbances tend to occur at certain sites or not can significantly affect habitat availability and metapopulation persistence of early-successional habitat specialists. Available models that combine metapopulation and landscape processes do not address how to model mobile, spatially shifting disturbance intensities independent of factors of site suitability. We present a model that allows the study on how a mobile disturbance pattern, of either natural or anthropogenic origin, affects patch network and metapopulation dynamics in realistic, heterogeneous l…

0106 biological sciencesThe false heath fritillaryDisturbance (geology)Metapopulation dynamicsClimate changeHabitat suitability modelsMetapopulationhabitaatti010603 evolutionary biology01 natural sciencesMetapopulation modelsmetapopulaatiotMelitaea diaminaMelitaea diaminabiologyEcology010604 marine biology & hydrobiologyEcological Modelingtummaverkkoperhonen15. Life on landbiology.organism_classificationpopulaatiodynamiikkaHabitat dynamicsHeath fritillaryGeographyHabitatWildlife Ecology and ConservationButterflyPersistence (discontinuity)
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Predicting shifting sustainability trade-offs in marine finfish aquaculture under climate change

2018

Defining sustainability goals is a crucial but difficult task because it often involves the quantification of multiple interrelated and sometimes conflicting components. This complexity may be exacerbated by climate change, which will increase environmental vulnerability in aquaculture and potentially compromise the ability to meet the needs of a growing human population. Here, we developed an approach to inform sustainable aquaculture by quantifying spatio-temporal shifts in critical trade-offs between environmental costs and benefits using the time to reach the commercial size as a possible proxy of economic implications of aquaculture under climate change. Our results indicate that optim…

0106 biological sciencesTrade-offsSettore BIO/07 - EcologiaAquatic OrganismsConservation of Natural Resources010504 meteorology & atmospheric sciencesClimate ChangeMechanistic predictive modelsPopulationFisheriesClimate changeAquaculture01 natural sciencesAquaculture; Mechanistic predictive models; Mediterranean Sea; Regional climate models; Seabass; Trade-offs; Global and Planetary Change; Environmental Chemistry; Ecology; 2300Effects of global warmingseabaMediterranean SeaAnimalsHumansEnvironmental ChemistryEnvironmental impact assessmenteducationEnvironmental planning0105 earth and related environmental sciencesGeneral Environmental Scienceeducation.field_of_studyGlobal and Planetary Changemechanistic predictive modelEcology2300010604 marine biology & hydrobiologyregional climate modelFishesTemperatureNatural resourceSeabassSustainable managementSustainabilityBusinessGlobal and Planetary ChangeRegional climate models
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Effect of acyl-CoA oxidase activity on the accumulation of gamma-decalactone by the yeast Yarrowia lipolytica: a factorial approach.

2007

International audience; beta-Oxidation is a cyclic pathway involved in the degradation of lipids. In yeast, it occurs in peroxisomes and the first step is catalyzed by an acyl-CoA oxidase (Aoxp). The yeast Yarrowia lipolytica possesses several genes (POX) coding for Aoxps. This study is based on the factorial analysis of results obtained with the many POX derivative strains that have been constructed previously. The effect of interactions between Aoxps on the acyl-CoA oxidase (Aox) activity was important even at the second order. We then investigated the effect of Aox activity on growth and lactone production. Aox activity was correlated with acidification of the medium by cells and with ce…

0106 biological sciencesYarrowia lipolyticaMESH: Enzyme ActivationMetabolic Clearance RateMESH: Factor Analysis StatisticalYarrowiaBiologymodèleModels Biological01 natural sciencesApplied Microbiology and BiotechnologyLactones03 medical and health sciencesEnzyme activatorSpecies SpecificityMESH: Computer Simulation010608 biotechnologyCombinatorial Chemistry TechniquesAcyl-CoA oxidaseMESH: Species SpecificityComputer Simulation030304 developmental biologychemistry.chemical_classificationMESH: Metabolic Clearance Rate0303 health sciencesOxidase testmétabolisme des acides grasAcyl-CoA oxidase activityMESH: Acyl-CoA OxidaseMESH: Models BiologicalYarrowia[SDV.BBM.BM]Life Sciences [q-bio]/Biochemistry Molecular Biology/Molecular biologyGeneral MedicinePeroxisomebiology.organism_classificationYeastEnzyme ActivationBiochemistrychemistrylactoneMolecular MedicineMESH: Combinatorial Chemistry TechniquesMESH: YarrowiaAcyl-CoA OxidaseFactor Analysis StatisticalLactoneMESH: Lactones
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Habitat modeling for cetacean management: Spatial distribution in the southern Pelagos Sanctuary (Mediterranean Sea)

2017

International audience; Effective management and conservation of wild populations requires knowledge of their habitats, especially by mean of quantitative analyses of their spatial distributions. The Pelagos Sanctuary is a dedicated marine protected area for Mediterranean marine mammals covering an area of 90,000km2 in the north-western Mediterranean Sea between Italy, France and the Principate of Monaco. In the south of the Sanctuary, i.e. along the Sardinian coast, a range of diverse human activities (cities, industry, fishery, tourism) exerts several current ad potential threats to cetacean populations. In addition, marine mammals are recognized by the EU Marine Strategy Framework Direct…

0106 biological sciences[SDE.MCG]Environmental Sciences/Global ChangesPopulationStenella coeruleoalbaOceanography010603 evolutionary biology01 natural sciencesMarine Strategy Framework DirectiveMediterranean sea[SDV.EE.ECO]Life Sciences [q-bio]/Ecology environment/Ecosystemsbiology.animal14. Life underwatereducationBayesian modelsCetacean distributionseducation.field_of_studybiologyBalaenopteraEcology010604 marine biology & hydrobiologyconservation15. Life on landBottlenose dolphinbiology.organism_classificationFisheryMpaGeographyOceanographyHabitat13. Climate actionMarine protected area[SDE.BE]Environmental Sciences/Biodiversity and Ecology
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Macrophytes in boreal streams: Characterizing and predicting native occurrence and abundance to assess human impact

2016

Abstract Macrophytes are a structurally and functionally essential element of stream ecosystems and therefore indispensable in assessment, protection and restoration of streams. Modelling based on continuous environmental gradients offers a potential approach to predict natural variability of communities and thereby improve detection of anthropogenic community change. Using data from minimally disturbed streams, we described natural macrophyte assemblages in pool and riffle habitats separately and in combination, and explored their variation across large scale environmental gradients. Specifically, we developed RIVPACS-type models to predict the presence and abundance of macrophyte taxa at …

0106 biological sciencesbioassessmentRiffleEcologyEcologyNull model010604 marine biology & hydrobiologyagricultural pressureGeneral Decision SciencesSTREAMSpredictive modelsreference condition010603 evolutionary biology01 natural sciencesMacrophyteRIVPACSRIVPACSBorealHabitatwater framework directiveta1181Environmental scienceEcosystemEcology Evolution Behavior and SystematicsEcological Indicators
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Testing macroecological abundance patterns:the relationship between local abundance and range size, range position and climatic suitability among Eur…

2020

Aim A fundamental question in macroecology centres around understanding the relationship between species' local abundance and their distribution in geographical and climatic space (i.e. the multi-dimensional climatic space or climatic niche). Here, we tested three macroecological hypotheses that link local abundance to the following range properties: (a) the abundance-range size relationship, (b) the abundance-range centre relationship and (c) the abundance-suitability relationship. Location Europe. Taxon Vascular plants. Methods Distribution range maps were extracted from the Chorological Database Halle to derive information on the range and niche sizes of 517 European vascular plant speci…

0106 biological sciencescommonness and rarityClimatic suitabilityRange (biology)[SDE.MCG]Environmental Sciences/Global ChangesCommonness and raritydistributionsRange size[SDV.BID]Life Sciences [q-bio]/Biodiversityshape010603 evolutionary biology01 natural sciencesVegetation-plot dataRealized climatic nichemodelsAbundanceniche breadthAbundance (ecology)577: ÖkologiePlant ecologyspecies distribution modelsEcology Evolution Behavior and Systematicsclimatic suitabilityrange size[SDV.EE]Life Sciences [q-bio]/Ecology environmentClimatology2. Zero hungerabundanceEcologyrealized climatic nicheEcologyEcologia vegetal010604 marine biology & hydrobiologyconservationresolutionSpecies distribution modeldynamics15. Life on landvegetation-plot data580: Pflanzen (Botanik)GeographyClimatologiacommunity[SDE.BE]Environmental Sciences/Biodiversity and EcologyResolutionVegetation‐plot data
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Assessing the indirect and long-term ecological impacts of innovation in agriculture is a real challenge: the GM example

2003

All innovation in agriculture constitutes a significant and complex ecological disturbance, even if limited to a single and simple action. Indeed, whatever the nature and objective of the action, a large number of ecological processes are affected and numerous discontinuities may occur within the agro-ecosystem, in both time and space. As the GMO example illustrates, it is not sufficient to focus on direct effect of innovation, it is necessary to forecast mid- and long-term impacts of innovation with respect to the environment. Modelling phenomena appear then to be a key element to achieve this goal.

0106 biological sciencescost benefits balanceecological impactco-existencelcsh:TP670-699010603 evolutionary biology01 natural sciencesBiochemistrygene flow models[SDV.IDA]Life Sciences [q-bio]/Food engineeringGM plantsEconomicsAGRONOMIEInnovationComputingMilieux_MISCELLANEOUSSimple (philosophy)business.industryEcology04 agricultural and veterinary sciences[SDV.IDA] Life Sciences [q-bio]/Food engineeringEnvironmental economicsTerm (time)Action (philosophy)Disturbance (ecology)13. Climate actionAgriculture040103 agronomy & agriculture0401 agriculture forestry and fisherieslcsh:Oils fats and waxesElement (criminal law)businessFood Science
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Resource availability and competition shape the evolution of survival and growth ability in a bacterial community

2013

Resource availability is one of the main factors determining the ecological dynamics of populations or species. Fluctuations in resource availability can increase or decrease the intensity of resource competition. Resource availability and competition can also cause evolutionary changes in life-history traits. We studied how community structure and resource fluctuations affect the evolution of fitness related traits using a two-species bacterial model system. Replicated populations of Serratia marcescens (copiotroph) and Novosophingobium capsulatum (oligotroph) were reared alone or together in environments with intergenerational, pulsed resource renewal. The comparison of ancestral and evol…

0106 biological sciencesecological nichesBACTERIAL BIOFILMSResource (biology)media_common.quotation_subjectScienceAdaptation BiologicalBiologyco-evolutionEnvironment010603 evolutionary biology01 natural sciencesCompetition (biology)Bacterial evolution03 medical and health sciencesSpecies SpecificityAdaptive radiationCopiotrophSerratia marcescens030304 developmental biologymedia_commonEcological niche0303 health sciencesMultidisciplinaryEcologyMicrobiotaQCommunity structureRInterspecific competitionbiology.organism_classificationBiological EvolutionSurvival AnalysisSphingomonadaceaeSerratia marcescens1181 Ecology evolutionary biologyLinear ModelsMedicineMicrobial Interactionsta1181competitionResearch ArticlePLOS ONE
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Fishery-dependent and -independent data lead to consistent estimations of essential habitats

2016

AbstractSpecies mapping is an essential tool for conservation programmes as it provides clear pictures of the distribution of marine resources. However, in fishery ecology, the amount of objective scientific information is limited and data may not always be directly comparable. Information about the distribution of marine species can be derived from two main sources: fishery-independent data (scientific surveys at sea) and fishery-dependent data (collection and sampling by observers in commercial vessels). The aim of this paper is to compare whether these two different sources produce similar, complementary, or different results. We compare them in the specific context of identifying the Es…

0106 biological scienceshttp://aims.fao.org/aos/agrovoc/c_28840Biodiversité et Ecologiehabitatmodélisation spatialehttp://aims.fao.org/aos/agrovoc/c_38371OceanographyGaleus melastomus01 natural sciencesRessource halieutiquehttp://aims.fao.org/aos/agrovoc/c_38127Scyliorhinus caniculamodèle hiérarchiqueSpatial statisticsEcologymodèle de distributionSampling (statistics)Contrast (statistics)Cross-validationModélisation et simulationGeographyHabitatGestion des pêchesModeling and Simulationhttp://aims.fao.org/aos/agrovoc/c_10566http://aims.fao.org/aos/agrovoc/c_3456http://aims.fao.org/aos/agrovoc/c_38117survey designMarine conservationSpecies Distribution ModelsEcology (disciplines)Bayesian probabilityEtmopterus spinaxenquête statistiqueDonnée sur les pêchesmodèle spatiotemporelSede Central IEOContext (language use)Aquatic ScienceDistribution des populationsBayesian hierarchical models010603 evolutionary biologyhttp://aims.fao.org/aos/agrovoc/c_24026elasmobranchsBiodiversity and Ecologyélasmobrancheétude comparativeBayesian hierarchical models;Cross-validation;Species Distribution Models;Spatial statistics;INLA;elasmobranchs ; survey designINLA14. Life underwaterspecies distribution modelsEcology Evolution Behavior and Systematicshttp://aims.fao.org/aos/agrovoc/c_6113collecte des donnéesÉcologie marinehttp://aims.fao.org/aos/agrovoc/c_29788http://aims.fao.org/aos/agrovoc/c_4609010604 marine biology & hydrobiologyGestion et conservation des pêchescross validation[INFO.INFO-MO]Computer Science [cs]/Modeling and Simulationmodèle bayésienFisheryM01 - Pêche et aquaculture - Considérations généraleshttp://aims.fao.org/aos/agrovoc/c_2a75d27eThéorie bayésienneM40 - Écologie aquatiqueSpatial ecologyhttp://aims.fao.org/aos/agrovoc/c_2942[SDE.BE]Environmental Sciences/Biodiversity and Ecologyvalidation croiséeElasmobranchii
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Environmental Characteristics and Anthropogenic Impact Jointly Modify Aquatic Macrophyte Species Diversity

2018

Species richness and spatial variation in community composition (i.e. beta diversity) are key measures of biodiversity. They are largely determined by natural factors, but also increasingly affected by anthropogenic factors. Thus, there is a need for a clear understanding of the human impact on species richness and beta diversity, the underlying mechanisms, and whether human-induced changes can override natural patterns. Here, we dissect the patterns of species richness, community composition and beta diversity in relation to different environmental factors as well as human impact in one framework: aquatic macrophytes in 66 boreal lakes in Eastern Finland. The lakes had been classified as h…

0106 biological scienceshuman impactbiodiversity; beta diversity; community composition; eutrophication; human impact; null models species richness; water plantsBeta diversityBiodiversityPlant Sciencelcsh:Plant culture010603 evolutionary biology01 natural scienceslcsh:SB1-1110community compositionOriginal ResearchbiodiversityCommunityEcologyrehevöityminen010604 marine biology & hydrobiologySpecies diversityluonnon monimuotoisuusbiodiversiteettiMacrophytenull models species richnesseutrophicationta1181Environmental sciencebeta diversitySpatial variabilitySpecies richnessWater qualitywater plantsvesikasvitFrontiers in Plant Science
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