Search results for " array"
showing 10 items of 895 documents
Analysis of sequence variations in the LDL receptor gene in Spain: general gene screening or search for specific alterations?
2006
Abstract Background: Familial hypercholesterolemia (FH) is a frequent form of autosomal-dominant hypercholesterolemia that predisposes to premature coronary atherosclerosis. FH is caused by sequence variations in the gene coding for the LDL receptor (LDLR). This gene has a wide spectrum of sequence variations, and genetic diagnosis can be performed by 2 strategies. Methods: Point variations and large rearrangements were screened along all the LDLR gene (promoter, exons, and flanking intron sequences). Results: We screened a sample of 129 FH probands from the Valencian Community, Spain, and identified 54 different LDLR sequence variations. The most frequent (10% of cases) was 111insA, and 60…
A Novel Deletion in the Thyrotropin Beta-Subunit Gene Identified by Array Comparative Genomic Hybridization Analysis Causes Central Congenital Hypoth…
2014
<b><i>Background:</i></b> Isolated central congenital hypothyroidism (ICCH) is rare but important. Most ICCH patients are diagnosed later, which results in severe growth failure and intellectual disability. <b><i>Objective:</i></b> We describe a boy with ICCH due to a large homozygous <i>TSHβ </i>gene deletion. <b><i>Results:</i></b> A 51-day-old male Turkish infant, whose parents were first cousins, was admitted for evaluation of prolonged jaundice. His clinical appearance was compatible with hypothyroidism. Venous thyrotropin (TSH) was undetectably low, with a subsequent low free T4 and a low free T3, sugg…
Genome-wide detection of signatures of selection in three Valdostana cattle populations
2020
International audience; The Valdostana is a local dual purpose cattle breed developed in Italy. Three populations are recognized within this breed, based on coat colour, production level, morphology and temperament: Valdostana Red Pied (VPR), Valdostana Black Pied (VPN) and Valdostana Chestnut (VCA). Here, we investigated putative genomic regions under selection among these three populations using the Bovine 50K SNP array by combining three different statistical methods based either on allele frequencies (F-ST) or extended haplotype homozygosity (iHS and Rsb). In total, 8, 5 and 8 chromosomes harbouring 13, 13 and 16 genomic regions potentially under selection were identified by at least tw…
The Inflammatory Response in Acyl-CoA Oxidase 1 Deficiency (Pseudoneonatal Adrenoleukodystrophy)
2012
Among several peroxisomal neurodegenerative disorders, the pseudoneonatal adrenoleukodystrophy (P-NALD) is characterized by the acyl-coenzyme A oxidase 1 (ACOX1) deficiency, which leads to the accumulation of very-long-chain fatty acids ( VLCFA) and inflammatory demyelination. However, the components of this inflammatory process in P-NALD remain elusive. In this study, we used transcriptomic profiling and PCR array analyses to explore inflammatory gene expression in patient fibroblasts. Our results show the activation of IL-1 inflammatory pathway accompanied by the increased secretion of two IL-1 target genes, IL-6 and IL-8 cytokines. Human fibroblasts exposed to very-long-chain fatty acids…
An efficient hardware implementation of MQ decoder of the JPEG2000
2014
Abstract JPEG2000 is an international standard for still images intended to overcome the shortcomings of the existing JPEG standard. Compared to JPEG image compression techniques, JPEG2000 standard has not only better not only has better compression ratios, but it also offers some exciting features. As it’s hard to meet the real-time requirement of image compression systems by software, it is necessary to implement compression system by hardware. The MQ decoder of the JPEG2000 standard is an important bottleneck for real-time applications. In order to meet the real-time requirement we propose in this paper a novel architecture for a MQ decoder with high throughput which is comparable to tha…
Electronic Sensor Technologies in Monitoring Quality of Tea: A Review.
2022
Tea, after water, is the most frequently consumed beverage in the world. The fermentation of tea leaves has a pivotal role in its quality and is usually monitored using the laboratory analytical instruments and olfactory perception of tea tasters. Developing electronic sensing platforms (ESPs), in terms of an electronic nose (e-nose), electronic tongue (e-tongue), and electronic eye (e-eye) equipped with progressive data processing algorithms, not only can accurately accelerate the consumer-based sensory quality assessment of tea, but also can define new standards for this bioactive product, to meet worldwide market demand. Using the complex data sets from electronic signals integrated with…
Resveratrol decreases the levels of miR-155 by upregulating miR-663, a microRNA targeting JunB and JunD.
2010
An inflammatory component is present in the microenvironment of most neoplastic tissues, including those not causally related to an obvious inflammatory process. Several microRNAs, and especially miR-155, play an essential role in both the innate and adaptative immune response. Resveratrol (trans-3,4#,5-trihydroxystilbene) is a natural antioxidant with anti-inflammatory properties that is currently at the stage of preclinical studies for human cancer prevention. Here, we establish that, in human THP-1 monocytic cells as well as in human blood monocytes, resveratrol upregulates miR- 663, a microRNA potentially targeting multiple genes implicated in the immune response. In THP-1 cells, miR-66…
Analysis of extended genomic rearrangements in oncological research.
2007
Screening for genomic rearrangements is a fundamental task in the genetic diagnosis of many inherited disorders including cancer-predisposing syndromes. Several methods were developed for analysis of structural genomic abnormalities, some are targeted to the analysis of one or few specific loci, others are designed to scan the whole genome. Locus-specific methods are used when the candidate loci responsible for the specific pathological condition are known. Whole-genome methods are used to discover loci bearing structural abnormalities when the disease-associated locus is unknown. Three main approaches have been employed for the analysis of locus-specific structural changes. The first two a…
Hardware implementation of real-time Extreme Learning Machine in FPGA: Analysis of precision, resource occupation and performance
2016
Extreme Learning Machine (ELM) on-chip learning is implemented on FPGA.Three hardware architectures are evaluated.Parametrical analysis of accuracy, resource occupation and performance is carried out. Display Omitted Extreme Learning Machine (ELM) proposes a non-iterative training method for Single Layer Feedforward Neural Networks that provides an effective solution for classification and prediction problems. Its hardware implementation is an important step towards fast, accurate and reconfigurable embedded systems based on neural networks, allowing to extend the range of applications where neural networks can be used, especially where frequent and fast training, or even real-time training…
Wireless versus Wired Network-on-Chip to Enable the Multi- Tenant Multi-FPGAs in Cloud
2021
The new era of computing is not CPU-centric but enriched with all the heterogeneous computing resources including the reconfigurable fabric. In multi-FPGA architecture, either deployed within a data center or as a standalone model, inter-FPGA communication is crucial. Network-on-chip exhibits a promising performance for the integration of one FPGA. A sustainable communication architecture requires stable performance as the number of applications or users grows. Wireless network-on-chip has the potential to be that communication architecture, as it boasts the same performance capability as wired solutions in addition to its multicast capacities. We conducted an exploratory study to investiga…