Search results for "K+K"

showing 10 items of 14760 documents

Throwing down a genomic gauntlet on fisheries-induced evolution

2021

Beginning with studies on crypsis and camouflage, the hypothesis that predators can generate evolutionary change in their prey has a long and rich history (1). Few predators, however, rival humans in their potential to generate selection responses and concomitant phenotypic change on contemporary timescales. In the 1930s, J. B. S. Haldane (2) mused that fishing would be an ideal candidate for such “observable evolution” within a human lifetime, proceeding “with extreme and abnormal speed.” However, it was not until the late 1970s that research on fisheries-induced evolution (FIE) gained a substantive scientific foothold, beginning with thought-provoking work on Canadian whitefish ( Coregonu…

0106 biological sciences0301 basic medicineCoregonus clupeaformisFishingFisheriesevoluutioBiodiversity437430Polymorphism Single Nucleotide010603 evolutionary biology01 natural sciencesPredation03 medical and health sciencesPer capitaAnimals14. Life underwaterSemelparity and iteroparityPopulation DensityMultidisciplinaryPopulation BiologybiologykalakannatFishesGenomicsgenomiikkaBiological Sciencesbiology.organism_classificationBiological EvolutionkalastusFisherykalatalousOverexploitation030104 developmental biologyCrypsisCommentaryProceedings of the National Academy of Sciences
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Ecological plant epigenetics: Evidence from model and non-model species, and the way forward

2017

Growing evidence shows that epigenetic mechanisms contribute to complex traits, with implications across many fields of biology. In plant ecology, recent studies have attempted to merge ecological experiments with epigenetic analyses to elucidate the contribution of epigenetics to plant phenotypes, stress responses, adaptation to habitat, and range distributions. While there has been some progress in revealing the role of epigenetics in ecological processes, studies with non-model species have so far been limited to describing broad patterns based on anonymous markers of DNA methylation. In contrast, studies with model species have benefited from powerful genomic resources, which contribute…

0106 biological sciences0301 basic medicineEPIGENOMIC DIVERSITY[SDV]Life Sciences [q-bio]Species distributionINDIVIDUAL VARIATIONPhenotypic plasticity01 natural sciencesGenomephenotypic plasticityEpigenesis GeneticDNA METHYLATION VARIATIONComputingMilieux_MISCELLANEOUS0303 health sciencesEcologyEcologybioinformatiikkagenomiikkaGenomicsPlantsBioinformatics; ecological epigenetics; genomics; phenotypic plasticity; response to environment; Ecology Evolution Behavior and Systematics[SDV.BIBS]Life Sciences [q-bio]/Quantitative Methods [q-bio.QM]HabitatepigenetiikkainternationalPHYSCOMITRELLA-PATENSresponse to environmentPERENNIAL HERBkasviekologiaEcological epigeneticsSEQUENCING DATAEvolutionBioinformaticsEcology (disciplines)GenomicsBiology010603 evolutionary biology[SDV.GEN.GPL]Life Sciences [q-bio]/Genetics/Plants genetics03 medical and health sciencesPolyploidBehavior and SystematicskasvitEpigeneticsEcosystemEcology Evolution Behavior and Systematics030304 developmental biologyHERB HELLEBORUS-FOETIDUSPhenotypic plasticityBioinformatics ; Ecological Epigenetics ; Genomics ; Phenotypic Plasticity ; Response To EnvironmentAmbientaleResponse to environmentDNA Methylation15. Life on landEcological realismPlant ecology030104 developmental biologyARABIDOPSIS-THALIANABioinformatics ecological epigenetics genomics phenotypic plasticity response to environmentAdaptation[SDE.BE]Environmental Sciences/Biodiversity and EcologyNATURAL-POPULATIONS
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Covariation and phenotypic integration in chemical communication displays: biosynthetic constraints and eco-evolutionary implications

2018

Chemical communication is ubiquitous. The identification of conserved structural elements in visual and acoustic communication is well established, but comparable information on chemical communication displays (CCDs) is lacking. We assessed the phenotypic integration of CCDs in a meta‐analysis to characterize patterns of covariation in CCDs and identified functional or biosynthetically constrained modules. Poorly integrated plant CCDs (i.e. low covariation between scent compounds) support the notion that plants often utilize one or few key compounds to repel antagonists or to attract pollinators and enemies of herbivores. Animal CCDs (mostly insect pheromones) were usually more integrated t…

0106 biological sciences0301 basic medicineEco evolutionaryanalysisPhysiologyPlant ScienceAnimal Breeding and GenomicsBiologyfloral scentsChemical communicationFloral scentsphenotypic integration010603 evolutionary biology01 natural sciencesChemical communication03 medical and health sciencesPhenotypic integrationbiosynthetic constraintsFokkerij en Genomicavegetative scentsLaboratory of Entomologycorrelation networkEcologyOrganic Chemistrychemical communicationPhenotypic integrationInsect pheromonesPE&RCLaboratorium voor Entomologiecorrelation network analysisOrganische ChemieCorrelation network analysisBiosynthetic constraints030104 developmental biologyEvolutionary biologyinternationalFloral scentIdentification (biology)EPSVegetative scentsNew Phytologist
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A roadmap for understanding the evolutionary significance of structural genomic variation

2020

Author's accepted manuscript Structural genomic variants (SVs) take diverse forms and are ubiquitous drivers of ecological and evolutionary processes. Most studies of SVs focus on the adaptive significance of gene duplications and large inversions. Future studies should catalog SVs of all types and sizes and systematically test their evolutionary implications. We propose a roadmap and definitions for the study of SVs in ecological and evolutionary genomics. Best practices for SV detection are needed to facilitate comparisons across studies. Integrating population genomic, theoretical, and experimental approaches to SVs will more comprehensively characterize genomic variation, uncover the ad…

0106 biological sciences0301 basic medicineFuture studiesEvolutionary significanceGenomicsCommon frameworkVariation (game tree)BiologyAdaptation PhysiologicalBiological Evolution010603 evolutionary biology01 natural sciencesPopulation genomics03 medical and health sciences030104 developmental biologyEvolutionary biologyChromosome InversionGenetic algorithmHumansMetagenomicsCopy-number variationAdaptationEcology Evolution Behavior and SystematicsVDP::Landbruks- og Fiskerifag: 900::Fiskerifag: 920VDP::Matematikk og Naturvitenskap: 400::Zoologiske og botaniske fag: 480
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Demographic history has shaped the strongly differentiated corkwing wrasse populations in Northern Europe

2019

Understanding the biological processes involved in genetic differentiation and divergence between populations within species is a pivotal aim in evolutionary biology. One particular phenomenon that requires clarification is the maintenance of genetic barriers despite the high potential for gene flow in the marine environment. Such patterns have been attributed to limited dispersal or local adaptation, and to a lesser extent to the demographic history of the species. The corkwing wrasse (Symphodus melops) is an example of a marine fish species where regions of particular strong divergence are observed. One such genetic break occurred at a surprisingly small spatial scale (FST ~0.1), over a s…

0106 biological sciences0301 basic medicineGene FlowMaleReproductive IsolationDemographic historyphylogeography010603 evolutionary biology01 natural sciencesGene flow03 medical and health sciencesGenetic driftGeneticsAnimals14. Life underwaterEcology Evolution Behavior and Systematicspopulation genetics—empiricalLocal adaptationDemographyfishGenomebiologyEcologyGenetic DriftFisheslandscape geneticsVDP::Matematikk og Naturvitenskap: 400Reproductive isolationVDP::Mathematics and natural science: 400::Zoology and botany: 480::Zoogeography: 486VDP::Matematikk og Naturvitenskap: 400::Zoologiske og botaniske fag: 480::Zoogeografi: 486biology.organism_classificationEuropePhylogeography030104 developmental biologyaquacultureEvolutionary biologyBiological dispersalFemaleCorkwing wrasse
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Daphnia invest in sexual reproduction when its relative costs are reduced

2018

The timing of sex in facultatively sexual organisms is critical to fitness, due to the differing demographic consequences of sexual versus asexual reproduction. In addition to the costs of sex itself, an association of sex with the production of dormant life stages also influences the optimal use of sex, especially in environments where resting eggs are essential to survive unfavourable conditions. Here we document population dynamics and the occurrence of sexual reproduction in natural populations of Daphnia magna across their growing season. The frequency of sexually reproducing females and males increased with population density and with decreasing asexual clutch sizes. The frequency of…

0106 biological sciences0301 basic medicineLIFE-HISTORYsexual reproductioncost of sexAsexual reproductionCYCLICAL PARTHENOGENS01 natural sciencesDaphniaPopulation density2300 General Environmental Sciencetiming of sexLOCAL ADAPTATION2400 General Immunology and Microbiologypopulation dynamicsGeneral Environmental Scienceeducation.field_of_studybiologyINDUCTIONMIXED-EFFECTS MODELSGeneral MedicineCladocera1181 Ecology evolutionary biology590 Animals (Zoology)General Agricultural and Biological SciencesEvolutionPopulationDaphnia magna1100 General Agricultural and Biological SciencesPULEX010603 evolutionary biologyGeneral Biochemistry Genetics and Molecular Biology03 medical and health sciences10127 Institute of Evolutionary Biology and Environmental Studies1300 General Biochemistry Genetics and Molecular BiologyPopulation growtheducationpopulation densityLocal adaptationROTIFERSGeneral Immunology and Microbiologysuvullinen lisääntyminenreproduction (biology)biology.organism_classificationlisääntyminenpopulaatiodynamiikkaSexual reproduction030104 developmental biologyDaphniaMAGNADENSITYvesikirputta1181570 Life sciences; biologyDemography
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Three chromosomal rearrangements promote genomic divergence between migratory and stationary ecotypes of Atlantic cod

2016

AbstractIdentification of genome-wide patterns of divergence provides insight on how genomes are influenced by selection and can reveal the potential for local adaptation in spatially structured populations. In Atlantic cod – historically a major marine resource – Northeast-Arctic- and Norwegian coastal cod are recognized by fundamental differences in migratory and non-migratory behavior, respectively. However, the genomic architecture underlying such behavioral ecotypes is unclear. Here, we have analyzed more than 8.000 polymorphic SNPs distributed throughout all 23 linkage groups and show that loci putatively under selection are localized within three distinct genomic regions, each of sev…

0106 biological sciences0301 basic medicineLinkage disequilibriumHeterozygoteGenotypePopulation010603 evolutionary biology01 natural sciencesGenomePolymorphism Single NucleotideArticleLinkage Disequilibrium03 medical and health sciencesVDP::Matematikk og naturvitenskap: 400::Basale biofag: 470::Genetikk og genomikk: 474Genetic variationAnimals14. Life underwatereducationLocal adaptationGeneticsEcotypeGene Rearrangementeducation.field_of_studyMultidisciplinaryGenomeEcotypebiologyGenetic VariationBayes TheoremGene rearrangementbiology.organism_classificationVDP::Mathematics and natural scienses: 400::Basic biosciences: 470::Genetics and genomics: 474030104 developmental biologyGadus morhuaEvolutionary biologyAnimal MigrationAtlantic codScientific Reports
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Direct and correlated responses to bi-directional selection on pre-adult development time in Drosophila montana.

2019

Selection experiments offer an efficient way to study the evolvability of traits that play an important role in insects’ reproduction and/or survival and to trace correlations and trade-offs between them. We have exercised bi-directional selection on Drosophila montana flies’ pre-adult development time under constant light and temperature conditions for 10 generations and traced the indirect effects of this selection on females’ diapause induction under different day lengths, as well as on the body weight and cold tolerance of both sexes. Overall, selection was successful towards slow, but not towards fast development. However, all fast selection line replicates showed at the end of selecti…

0106 biological sciences0301 basic medicineMalePhysiologymahlakärpäsetmedia_common.quotation_subjectAcclimatizationPhotoperiodCircadian clockevoluutiopre-adult developmental timeZoologyreproductive diapauseDiapauseBiologyDiapause Insect01 natural sciencestalvehtiminenbi-directional selection experimentbody weight03 medical and health scienceskylmänkestävyysControl lineAnimalsCircadian rhythmpaino (fysiikka)Selection GeneticSelection (genetic algorithm)media_commonvuorokausirytmiluonnonvalintaDirectional selectionBody WeightPupacold tolerancecritical day lengthEvolvabilityCold Temperature010602 entomology030104 developmental biologyInsect ScienceLarvata1181DrosophilaFemaleReproductionJournal of insect physiology
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Putting Parasemia in its phylogenetic place: a molecular analysis of the subtribe Arctiina (Lepidoptera)

2016

Despite being popular among amateur and professional lepidopterologists and posing great opportunities for evolutionary research, the phylogenetic relationships of tiger moths (Erebidae: Arctiinae) are not well resolved. Here we provide the first phylogenetic hypothesis for the subtribe Arctiina with the basic aim of clarifying the phylogenetic position of the Wood Tiger Moth Parasemia plantaginis Hübner, a model species in evolutionary ecology. We sampled 89 species in 52 genera within Arctiina s.l., 11 species of Callimorphina and two outgroup species. We sequenced up to seven nuclear genes (CAD, GAPDH, IDH, MDH, Ef1𝛼, RpS5, Wingless) and one mitochondrial gene (COI) including the barcod…

0106 biological sciences0301 basic medicineOroncusZoologyArctiinaeAcerbia010603 evolutionary biology01 natural sciencesErebidae03 medical and health sciencesChelismolecular analysisEpicalliaEcology Evolution Behavior and Systematicsbiologyta1184fylogenetiikkaArctiinawood tiger mothArctia festivabiology.organism_classificationphylogeneticsArctia030104 developmental biologyInsect Science1181 Ecology evolutionary biologytiger mothsta1181Parasemia plantaginisSystematic Entomology
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Biological control of potato soft rot caused by Dickeya solani and the survival of bacterial antagonists under cold storage conditions

2018

Dickeya and Pectobacterium are responsible for causing blackleg of plants and soft rot of tubers in storage and in the field, giving rise to losses in seed potato production. In an attempt to improve potato health, biocontrol activity of known and putative antagonists was screened using in vitro and in planta assays, followed by analysis of their persistence at various storage temperatures. Most antagonists had low survival on potato tuber surfaces at 4 °C. The population dynamics of the best low‐temperature tolerant strain and also the most efficient antagonist, Serratia plymuthica A30, along with Dickeya solani as target pathogen, was studied with TaqMan real‐time PCR throughout the stora…

0106 biological sciences0301 basic medicinePectobacteriumPopulationBlacklegCold storageblacklegDickeyaPlant ScienceHorticultureSerratia plymuthica A3001 natural sciencesEndophytebakteeritBiointeractions and Plant Health03 medical and health sciencespopulation dynamicsGeneticsserratia plymuthica A30kasvitauditCultivarta414education2. Zero hungereducation.field_of_studybiologyta1183fungifood and beveragesta4111biology.organism_classificationTaqMan real-time PCRpopulaatiodynamiikkabiocontrol agentHorticulture030104 developmental biologymärkämätäDickeya solaniAgronomy and Crop Science010606 plant biology & botanybiologinen torjunta
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