Search results for "Parallel"
showing 10 items of 667 documents
Ancestral Reconstruction and Investigations of Genomic Recombination on some Pentapetalae Chloroplasts
2019
Abstract In this article, we propose a semi-automated method to rebuild genome ancestors of chloroplasts by taking into account gene duplication. Two methods have been used in order to achieve this work: a naked eye investigation using homemade scripts, whose results are considered as a basis of knowledge, and a dynamic programming based approach similar to Needleman-Wunsch. The latter fundamentally uses the Gestalt pattern matching method of sequence matcher to evaluate the occurrences probability of each gene in the last common ancestor of two given genomes. The two approaches have been applied on chloroplastic genomes from Apiales, Asterales, and Fabids orders, the latter belonging to Pe…
A Hardware and Secure Pseudorandom Generator for Constrained Devices
2018
Hardware security for an Internet of Things or cyber physical system drives the need for ubiquitous cryptography to different sensing infrastructures in these fields. In particular, generating strong cryptographic keys on such resource-constrained device depends on a lightweight and cryptographically secure random number generator. In this research work, we have introduced a new hardware chaos-based pseudorandom number generator, which is mainly based on the deletion of an Hamilton cycle within the $N$ -cube (or on the vectorial negation), plus one single permutation. We have rigorously proven the chaotic behavior and cryptographically secure property of the whole proposal: the mid-term eff…
Platería morisca de obra de hilo (siglo XVI)
2019
The article discusses twenty tests performed by Valencian artisans to become masters of ―wire work‖ between the years 1508 and 1538. Considered minor works in the area of silver smithery, these pieces of jewellery are characterized by superimposed wire decoration. A peculiarity of these tests was that the pieces were not drawn on paper (the common practice for record-keeping purposes), but rather blackened and then stamped on- to paper. As a result, life-size and dated imprints have been preserved. as have the names of the artisans. They were silver workers whose biographies are known, all of them Christian; many of them worked in the Tossal district of Valencia, next to the M usli…
Why Cortices ? Neural Computation in the Vertebrate Visual System
1989
We propose three high level structural principles of neural networks in the vertebrate visual cortex and discuss some of their computational implications for early vision: a) Lamination, average axonal and dendritic domains, and intrinsic feedback determine the spatio-temporal interactions in cortical processing. Possible applications of the resulting filters include continuous motion perception and the direct measurement of high-level parameters of image flow, b) Retinotopic mapping is an emergent property of massively parallel connections. With a local intrinsic operation in the target area, mapping combines to a space-variant image processing system as would be useful in the analysis of …
Efficient distributed average consensus in wireless sensor networks
2020
International audience; Computing the distributed average consensus in Wireless Sensor Networks (WSNs) is investigated in this article. This problem, which is both natural and important, plays a significant role in various application fields such as mobile agents and fleet vehicle coordination, network synchronization, distributed voting and decision, load balancing of divisible loads in distributed computing network systems, and so on. By and large, the average consensus' objective is to have all nodes in the network converged to the average value of the initial nodes' measurements based only on local nodes' information states. In this paper, we introduce a fully distributed algorithm to a…
Many-body perturbation theory calculations using the yambo code
2019
Abstract yambo is an open source project aimed at studying excited state properties of condensed matter systems from first principles using many-body methods. As input, yambo requires ground state electronic structure data as computed by density functional theory codes such as Quantum ESPRESSO and Abinit. yambo’s capabilities include the calculation of linear response quantities (both independent-particle and including electron–hole interactions), quasi-particle corrections based on the GW formalism, optical absorption, and other spectroscopic quantities. Here we describe recent developments ranging from the inclusion of important but oft-neglected physical effects such as electron–phonon i…
Construction of Disjoint Virtual Backbones for Wireless Sensor Networks
2020
A wireless sensor network is a wireless network of sensors aimed at monitoring physical events. It has ingratiated itself into almost all areas of human endeavors. Data dissemination in these networks is quite challenging and is generally accomplished by flooding. But flooding introduces broadcast storm problem due from implosion and overlap. To overcome this, topology management can prescribe a virtual backbone network to which routing is confined. In this paper we propose an algorithm that constructs multiple disjoint virtual backbone networks, using only nodes' locations. The disjointedness makes routing more robust and the network exploitation energy efficient. Simulations show our algo…
CUSHAW2-GPU: Empowering Faster Gapped Short-Read Alignment Using GPU Computing
2014
We present CUSHAW2-GPU to accelerate the CUSHAW2 algorithm using compute unified device architecture (CUDA)-enabled GPUs. Two critical GPU computing techniques, namely intertask hybrid CPU-GPU parallelism and tile-based Smith-Waterman map backtracking using CUDA, are investigated to facilitate fast alignments. By aligning both simulated and real reads to the human genome, our aligner yields comparable or better performance compared to BWA-SW, Bowtie2, and GEM. Furthermore, CUSHAW2-GPU with a Tesla K20c GPU achieves significant speedups over the multithreaded CUSHAW2, BWA-SW, Bowtie2, and GEM on the 12 cores of a high-end CPU for both single-end and paired-end alignment.
When do different C4 leaf anatomies indicate independent C4 origins? Parallel evolution of C4 leaf types in Camphorosmeae (Chenopodiaceae).
2014
Broad-scale phylogenetic studies give first insights in numbers, relationships, and ages of C 4 lineages. They are, however, generally limited to a model that treats the evolution of the complex C4 syndrome in different lineages as a directly comparable process. Here, we use a resolved and well-sampled phylogenetic tree of Camphorosmeae, based on three chloroplast and one nuclear marker and on leaf anatomical traits to infer a more detailed picture of C4 leaftype evolution in this lineage. Our ancestral character state reconstructions allowed two scenarios: (i) Sedobassia is a derived C3/C4 intermediate, implying two independent gains of C4 in Bassia and Camphorosma; or (ii) Sedobassia is a…
Big Data Processing in the ATLAS Experiment: Use Cases and Experience
2015
Abstract The physics goals of the next Large Hadron Collider run include high precision tests of the Standard Model and searches for new physics. These goals require detailed comparison of data with computational models simulating the expected data behavior. To highlight the role which modeling and simulation plays in future scientific discovery, we report on use cases and experience with a unified system built to process both real and simulated data of growing volume and variety.