Search results for "QR"

showing 10 items of 591 documents

Bacterial and Archaeal Communities Change With Intensity of Vegetation Coverage in Arenized Soils From the Pampa Biome

2019

Arenization occurs in regions that present sandy soils with normal rainfall levels. Predatory use of environmental sources, the dissolution of arenitic rocks and reworking of non-consolidated surface sands intensify this degradation scenario. Thus, this work aimed to evaluate the impact of the arenization process in the Brazilian Pampa Biome and how this phenomenon affects the soil microbial and plant communities. For this purpose, three arenized areas in Southern Brazil (Pampa Biome) were selected and, in each one, three sampling points were studied: arenized (ARA), arenized to grassland transition (AGT), and grassland (GRA) areas. In the three sampling points, soils presented low levels o…

Microbiology (medical)plant compositionBiomelcsh:QR1-502Microbiologybacterial communityGrasslandlcsh:Microbiology03 medical and health sciencesOrganic matterOriginal Research030304 developmental biologyarenizationdegradationchemistry.chemical_classification0303 health sciencesgeographyMelinis repensTopsoilgeography.geographical_feature_categorybiology030306 microbiologyPlant communityVegetationbiology.organism_classificationdystrophic acid soilAgronomychemistrySoil waterPampa BiomeEnvironmental scienceFrontiers in Microbiology
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Profiling of Protein Degraders in Cultures of Human Gut Microbiota

2019

Unabsorbed proteins reach the colon and are fermented by the microbiota, yielding a variety of harmful metabolites. In the present study, a 16S rRNA gene survey identified the bacterial taxa flourishing in 11 batch fermentations with proteins and peptones as the sole fermentable substrates, inoculated with the feces of six healthy adults. Organic acids, ammonia, and indole resulting from protein breakdown and fermentation accumulated in all of the cultures. Analysis of differential abundances among time-points identified Enterobacteriaceae, Burkholderiaceae, and Desulfovibrionaceae (including Esherichia-Shigella, Sutterella, Parasutterella, and Bilophila) among the bacteria that especially …

Microbiology (medical)proteolysisFirmicuteslcsh:QR1-502gut microbiota proteolysis metagenomics enrichment culture EnterobacteriaceaeSutterellaMicrobiologylcsh:MicrobiologyMicrobiology03 medical and health sciencesEnterobacteriaceaeenrichment culture030304 developmental biologyOriginal Research0303 health sciencesmetagenomicsbiologygut microbiota030306 microbiologyRuminococcusLachnospiraceaeBacteroidetesbiology.organism_classificationRoseburiaBacteroidesRuminococcaceaeFrontiers in Microbiology
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The safety, technological, nutritional, and sensory challenges associated with lacto-fermentation of meat and meat products by using pure lactic acid…

2019

Introduction. Lactic acid bacteria (LAB) are the most popular microbial cultures used in the preparation of fermented foods (Bintsis, 2018). Due to their wide range of antimicrobial activity, LAB have been shown to improve safety, nutritional and sensory characteristics, control fermentation by microflora and speed maturation, as well as increase the shelf life of products (Des et al., 2018). Recently, as a new approach for the application of technological starters, great interest has been concentrated on their biodegradation and/or absorption properties of non-desirable chemical compounds, and it was reported that LAB can reduce polycyclic aromatic hydrocarbons (PAHs) and heterocyclic arom…

Microbiology (medical)safetyOpinionlacto-fermentation ; meat and meat products ; plant-lactic acid bacteria bioproducts ; safety ; biogenic amineslcsh:QR1-502biogenic aminesShelf lifeMicrobiologylcsh:Microbiology03 medical and health scienceschemistry.chemical_compoundBioproductsFood scienceNitriteFermentation in food processing030304 developmental biology0303 health sciencesCadaverine030306 microbiologymeat and meat productsfood and beveragesBiodegradationLactic acidchemistryFermentationlacto-fermentationplant-lactic acid bacteria bioproducts
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Regional Variation of Extended-Spectrum Beta-Lactamase (ESBL)-Producing Enterobacterales, Fluoroquinolone-Resistant Salmonella enterica and Methicill…

2020

Background: Antimicrobial resistance (AMR) thwarts the curative power of drugs and is a present-time global problem. We present data on antimicrobial susceptibility and resistance determinants of bacteria the WHO has highlighted as being key antimicrobial resistance concerns in Africa, to strengthen knowledge of AMR patterns in the region. Methods: Blood, stool, and urine specimens of febrile patients, aged between ≥ 30 days and ≤ 15 years and hospitalized in Burkina Faso, Gabon, Ghana, and Tanzania were cultured from November 2013 to March 2017 (Patients > 15 years were included in Tanzania). Antimicrobial susceptibility testing was performed for all Enterobacterales and Staphylococcus aur…

Microbiology (medical)sub-Saharan AfricaSalmonellaextended-spectrum beta-lactamase-(ESBL)Klebsiella pneumoniaemedicine.medical_treatmentlcsh:QR1-502Biologymethicillin-resistant Staphylococcus aureusmedicine.disease_causeMicrobiologylcsh:MicrobiologyMicrobiology03 medical and health sciencesAntibiotic resistanceEnterobacteralesparasitic diseasesmedicineantimicrobial resistanceOriginal Research030304 developmental biologyfever0303 health sciences030306 microbiologySalmonella entericabiochemical phenomena metabolism and nutritionbiology.organism_classificationbacterial infections and mycosesMethicillin-resistant Staphylococcus aureusStaphylococcus aureusSalmonella entericaBeta-lactamaseMultilocus sequence typingFrontiers in microbiology
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Impervious Surfaces Alter Soil Bacterial Communities in Urban Areas: A Case Study in Beijing, China

2018

The rapid expansion of urbanization has caused land cover change, especially the increasing area of impervious surfaces. Such alterations have significant effects on the soil ecosystem by impeding the exchange of gasses, water, and materials between soil and the atmosphere. It is unclear whether impervious surfaces have any effects on soil bacterial diversity and community composition. In the present study, we conducted an investigation of bacterial communities across five typical land cover types, including impervious surfaces (concrete), permeable pavement (bricks with round holes), shrub coverage (Buxus megistophylla Levl.), lawns (Festuca elata Keng ex E. Alexeev), and roadside trees (S…

Microbiology (medical)ved/biology.organism_classification_rank.specieslcsh:QR1-502urbanizationLand cover010501 environmental sciences01 natural sciencesShrubbacterial communityMicrobiologylcsh:MicrobiologyActinobacteriaImpervious surfaceEcosystem16S rRNA gene sequencing0105 earth and related environmental sciencesOriginal ResearchbiologyEcologyved/biologyEdaphic04 agricultural and veterinary sciencesimpervious surfacesbiology.organism_classificationSoil water040103 agronomy & agriculture0401 agriculture forestry and fisheriesEnvironmental scienceland cover typesAcidobacteriaFrontiers in Microbiology
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Free Chlorine and Peroxynitrite Alter the Capsid Structure of Human Norovirus GII.4 and Its Capacity to Bind Histo-Blood Group Antigens

2021

Human noroviruses (HuNoVs) are one of the leading causes of acute gastroenteritis worldwide. HuNoVs are frequently detected in water and foodstuffs. Free chlorine and peroxynitrite (ONOO−) are two oxidants commonly encountered by HuNoVs in humans or in the environment during their natural life cycle. In this study, we defined the effects of these two oxidants on GII.4 HuNoVs and GII.4 virus-like particles (VLPs). The impact on the capsid structure, the major capsid protein VP1 and the ability of the viral capsid to bind to histo-blood group antigens (HBGAs) following oxidative treatments were analyzed. HBGAs are attachment factors that promote HuNoV infection in human hosts. Overall, our re…

Microbiology (medical)viral proteinViral protein[SDV]Life Sciences [q-bio]viruseslcsh:QR1-502noroviruschemistry.chemical_elementvirus-like particlesmedicine.disease_causeMicrobiologylcsh:MicrobiologyperoxynitriteMicrobiologyBlood group antigens03 medical and health scienceschemistry.chemical_compoundAntigenmedicineChlorineOriginal Research030304 developmental biologyNorovirus GII0303 health sciences030306 microbiologyChemistryvirus diseasesfree chlorinebiochemical phenomena metabolism and nutrition3. Good healthCapsid[SDV.MP.VIR]Life Sciences [q-bio]/Microbiology and Parasitology/VirologyNorovirushisto-blood group antigensPeroxynitriteFrontiers in Microbiology
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In Silico Insights into the SARS CoV-2 Main Protease Suggest NADH Endogenous Defences in the Control of the Pandemic Coronavirus Infection

2020

COVID-19 is a pandemic health emergency faced by the entire world. The clinical treatment of the severe acute respiratory syndrome (SARS) CoV-2 is currently based on the experimental administration of HIV antiviral drugs, such as lopinavir, ritonavir, and remdesivir (a nucleotide analogue used for Ebola infection). This work proposes a repurposing process using a database containing approximately 8000 known drugs in synergy structure- and ligand-based studies by means of the molecular docking and descriptor-based protocol. The proposed in silico findings identified new potential SARS CoV-2 main protease (MPRO) inhibitors that fit in the catalytic binding site of SARS CoV-2 MPRO. Several sel…

Models Molecular0301 basic medicineAgingmedicine.medical_treatmentcoronaviruslcsh:QR1-502Viral Nonstructural Proteinsmedicine.disease_causelcsh:Microbiology0302 clinical medicineSettore BIO/10 - BiochimicaCoronavirus 3C ProteasesCoronavirusvirus diseasesLopinavirHypothesisMolecular Docking SimulationCysteine EndopeptidasesDrug repositioningInfectious Diseases030220 oncology & carcinogenesisCoronavirus InfectionsOxidation-Reductionmedicine.drugDNA damageIn silicoPneumonia ViralBiologyAntiviral AgentsHIV-proteaseBetacoronavirus03 medical and health sciencesSARS-CoV-2 main proteaseVirologymedicineHumansComputer SimulationProtease InhibitorsPandemicsBinding SitesProteaseSARS-CoV-2Drug RepositioningCOVID-19HIV Protease InhibitorsDRUDIT web servicemolecular dockingNADbiology.organism_classificationVirologySettore CHIM/08 - Chimica FarmaceuticaCOVID-19 Drug Treatmentcoronaviru030104 developmental biologyNADHRitonavirBetacoronavirusDNA Damage
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The solution behavior of dopamine in the presence of mono and divalent cations: A thermodynamic investigation in different experimental conditions

2021

The interactions of dopamine [2-(3,4-Dihydroxyphenyl)ethylamine, (Dop-)] with methylmercury(II) (CH3Hg+), magnesium(II), calcium(II), and tin(II) were studied in NaCl(aq) at different ionic strengths and temperatures. Different speciation models were obtained, mainly characterized by mononuclear species. Only for Sn2+ we observed the formation of binuclear complexes (M2L2 and M2LOH (charge omitted for simplicity)

Models MolecularCations DivalentDopaminePotentiometric titrationEnthalpyIonic bondingBiochemistryMicrobiologyArticleDivalentchemistry.chemical_compoundMetal complexesTheoryofComputation_ANALYSISOFALGORITHMSANDPROBLEMCOMPLEXITYSettore CHIM/01 - Chimica AnaliticaStability constantsMolecular Biologychemistry.chemical_classificationCatechol; Chemical speciation; Metal complexes; Sequestration; Stability constantsLigandHydrolysisOsmolar ConcentrationTemperatureSequestrationHydrogen-Ion ConcentrationQR1-502SolutionsKineticschemistrySpecific ion interaction theoryIonic strengthThermogravimetryCatecholPhysical chemistryThermodynamicsChemical speciationEthylamine
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Targeting the Class A Carbapenemase GES-5 via Virtual Screening

2020

The worldwide spread of &beta

Models MolecularDrugantibiotic resistanceGES-5Antibiotic resistancemedia_common.quotation_subjectIn silicoDrug Evaluation Preclinicallcsh:QR1-502Guyana extended-spectrum-β-lactamaseMicrobial Sensitivity TestsComputational biologyBiologyBiochemistrybeta-LactamasesArticlelcsh:Microbiologyguyana extended-spectrum-β-lactamasecarbapenemase03 medical and health sciencesAntibiotic resistanceBacterial ProteinsDrug Resistance BacterialHumansAntibiotic resistance; GES-5; Guyana extended-spectrum-β-lactamase; carbapenemase; virtual screening; docking; noncovalent inhibitionges-5noncovalent inhibitionMolecular Biology030304 developmental biologymedia_common0303 health sciencesVirtual screening030306 microbiologyAntibiotic resistance; Carbapenemase; Docking; GES-5; Guyana extended-spectrum-β-lactamase; Noncovalent inhibition; Virtual screeningHit to leadvirtual screeningAntimicrobialAnti-Bacterial AgentsCarbapenemsdockingBiomolecules
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Phosphonic Acid Analogs of Fluorophenylalanines as Inhibitors of Human and Porcine Aminopeptidases N: Validation of the Importance of the Substitutio…

2020

International audience; A library of phosphonic acid analogs of phenylalanine substituted with fluorine, chlorine and trifluoromethyl moieties on the aromatic ring was synthesized and evaluated for inhibitory activity against human (hAPN) and porcine (pAPN) aminopeptidases. Fluorogenic screening indicated that these analogs are micromolar or submicromolar inhibitors, both enzymes being more active against hAPN. In order to better understand the mode of the action of the most active compounds, molecular modeling was used. It confirmed that aminophosphonic portion of the enzyme is bound nearly identically in the case of all the studied compounds, whereas the difference in activity results fro…

Models MolecularMolecular modelPhosphorous AcidsSwineStereochemistrylcsh:QR1-502chemistry.chemical_elementPhenylalanine[CHIM.THER]Chemical Sciences/Medicinal ChemistryCD13 AntigensRing (chemistry)Biochemistrylcsh:MicrobiologyArticle03 medical and health scienceschemistry.chemical_compound0302 clinical medicinefluorineinhibitorsChlorineSide chainAnimalsHumansMolecular BiologyEnzyme Assays030304 developmental biologyphosphonic acid analogschemistry.chemical_classification0303 health sciencesTrifluoromethyl[CHIM.ORGA]Chemical Sciences/Organic chemistrymolecular modelingReproducibility of ResultsStereoisomerismMolecular Docking SimulationEnzymechemistry030220 oncology & carcinogenesishuman and porcine aminopeptidaseEnantiomerMolecules
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