Search results for "Statistical"
showing 10 items of 4960 documents
A comparison of three statistical methods for analysing extinction threat status
2013
SUMMARYThe International Union for Conservation of Nature (IUCN) Red List provides a globally-recognized evaluation of the conservation status of species, with the aim of catalysing appropriate conservation action. However, in some parts of the world, species data may be lacking or insufficient to predict risk status. If species with shared ecological or life history characteristics also tend to share their risk of extinction, then ecological or life history characteristics may be used to predict which species may be at risk, although perhaps not yet classified as such by the IUCN. Statistical models may be a means to determine whether there are non-threatened or unclassified species that s…
Statistical atlas based exudate segmentation
2013
Diabetic macular edema (DME) is characterized by hard exudates. In this article, we propose a novel statistical atlas based method for segmentation of such exudates. Any test fundus image is first warped on the atlas co-ordinate and then a distance map is obtained with the mean atlas image. This leaves behind the candidate lesions. Post-processing schemes are introduced for final segmentation of the exudate. Experiments with the publicly available HEI-MED data-set shows good performance of the method. A lesion localization fraction of 82.5% at 35% of non-lesion localization fraction on the FROC curve is obtained. The method is also compared to few most recent reference methods.
Optimizing colormaps with consideration for color vision deficiency to enable accurate interpretation of scientific data
2018
Color vision deficiency (CVD) affects more than 4% of the population and leads to a different visual perception of colors. Though this has been known for decades, colormaps with many colors across the visual spectra are often used to represent data, leading to the potential for misinterpretation or difficulty with interpretation by someone with this deficiency. Until the creation of the module presented here, there were no colormaps mathematically optimized for CVD using modern color appearance models. While there have been some attempts to make aesthetically pleasing or subjectively tolerable colormaps for those with CVD, our goal was to make optimized colormaps for the most accurate perce…
On the interpretability and computational reliability of frequency-domain Granger causality
2017
This Correspondence article is a comment which directly relates to the paper “A study of problems encountered in Granger causality analysis from a neuroscience perspective” (Stokes and Purdon, 2017). We agree that interpretation issues of Granger causality (GC) in neuroscience exist, partially due to the historically unfortunate use of the name “causality”, as described in previous literature. On the other hand, we think that Stokes and Purdon use a formulation of GC which is outdated (albeit still used) and do not fully account for the potential of the different frequency-domain versions of GC; in doing so, their paper dismisses GC measures based on a suboptimal use of them. Furthermore, s…
Active and inactive quarantine in epidemic spreading on adaptive activity-driven networks
2020
We consider an epidemic process on adaptive activity-driven temporal networks, with adaptive behaviour modelled as a change in activity and attractiveness due to infection. By using a mean-field approach, we derive an analytical estimate of the epidemic threshold for SIS and SIR epidemic models for a general adaptive strategy, which strongly depends on the correlations between activity and attractiveness in the susceptible and infected states. We focus on strong social distancing, implementing two types of quarantine inspired by recent real case studies: an active quarantine, in which the population compensates the loss of links rewiring the ineffective connections towards non-quarantining …
Requirement analysis for an artificial intelligence model for the diagnosis of the COVID-19 from chest X-ray data
2021
There are multiple papers published about different AI models for the COVID-19 diagnosis with promising results. Unfortunately according to the reviews many of the papers do not reach the level of sophistication needed for a clinically usable model. In this paper I go through multiple review papers, guidelines, and other relevant material in order to generate more comprehensive requirements for the future papers proposing a AI based diagnosis of the COVID-19 from chest X-ray data (CXR). Main findings are that a clinically usable AI needs to have an extremely good documentation, comprehensive statistical analysis of the possible biases and performance, and an explainability module.
Transfer Learning with Convolutional Networks for Atmospheric Parameter Retrieval
2018
The Infrared Atmospheric Sounding Interferometer (IASI) on board the MetOp satellite series provides important measurements for Numerical Weather Prediction (NWP). Retrieving accurate atmospheric parameters from the raw data provided by IASI is a large challenge, but necessary in order to use the data in NWP models. Statistical models performance is compromised because of the extremely high spectral dimensionality and the high number of variables to be predicted simultaneously across the atmospheric column. All this poses a challenge for selecting and studying optimal models and processing schemes. Earlier work has shown non-linear models such as kernel methods and neural networks perform w…
Machine learning method for single trajectory characterization
2019
In order to study transport in complex environments, it is extremely important to determine the physical mechanism underlying diffusion, and precisely characterize its nature and parameters. Often, this task is strongly impacted by data consisting of trajectories with short length and limited localization precision. In this paper, we propose a machine learning method based on a random forest architecture, which is able to associate even very short trajectories to the underlying diffusion mechanism with a high accuracy. In addition, the method is able to classify the motion according to normal or anomalous diffusion, and determine its anomalous exponent with a small error. The method provide…
Graphical model inference : Sequential Monte Carlo meets deterministic approximations
2019
Approximate inference in probabilistic graphical models (PGMs) can be grouped into deterministic methods and Monte-Carlo-based methods. The former can often provide accurate and rapid inferences, but are typically associated with biases that are hard to quantify. The latter enjoy asymptotic consistency, but can suffer from high computational costs. In this paper we present a way of bridging the gap between deterministic and stochastic inference. Specifically, we suggest an efficient sequential Monte Carlo (SMC) algorithm for PGMs which can leverage the output from deterministic inference methods. While generally applicable, we show explicitly how this can be done with loopy belief propagati…
Multi-scale analysis of the European airspace using network community detection
2014
We show that the European airspace can be represented as a multi-scale traffic network whose nodes are airports, sectors, or navigation points and links are defined and weighted according to the traffic of flights between the nodes. By using a unique database of the air traffic in the European airspace, we investigate the architecture of these networks with a special emphasis on their community structure. We propose that unsupervised network community detection algorithms can be used to monitor the current use of the airspaces and improve it by guiding the design of new ones. Specifically, we compare the performance of three community detection algorithms, also by using a null model which t…