Search results for "biophysic"

showing 10 items of 3565 documents

Constitutive expression of clathrin hub hinders elicitor-induced clathrin-mediated endocytosis and defense gene expression in plant cells.

2012

International audience; Endocytosis has been recently implicated in the signaling network associated with the recognition of microbes by plants. In a previous study, we showed that the elicitor cryptogein was able to induce clathrin-mediated endocytosis (CME) in tobacco suspension cells. Herein, we investigate further the induced CME by means of a GFP-tagged clathrin light chain and a CME inhibitor, the hub domain of clathrin heavy chain. Hub constitutive expression does affect neither cell growth nor constitutive endocytosis but abolishes cryptogein-induced CME. Such an inhibition has no impact on early events in the cryptogein signaling pathway but reduces the expression of defense-associ…

0106 biological sciencesCell signaling[SDV]Life Sciences [q-bio]Recombinant Fusion ProteinseducationBiophysicsGene Expressionbright yellow-2BiologyEndocytosisGenes Plant01 natural sciencesBiochemistryClathrincryptogeinCell LineFungal Proteins03 medical and health sciencesMicroscopy Electron TransmissionStructural BiologyGene expressionTobaccoGeneticscell signalingRNA MessengerMolecular Biology030304 developmental biologyPlant Proteins0303 health sciencesCell growthCell MembraneCell BiologyReceptor-mediated endocytosisPlants Genetically ModifiedClathrinEndocytosisElicitorCell biologyRNA PlantClathrin Heavy Chains[SDE]Environmental Sciencesbiology.proteinClathrin Light ChainsSignal transduction010606 plant biology & botanySignal TransductionFEBS letters
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AtCCS is a functional homolog of the yeast copper chaperone Ccs1/Lys7

2005

AbstractIn plant chloroplasts two superoxide dismutase (SOD) activities occur, FeSOD and Cu/ZnSOD, with reciprocal regulation in response to copper availability. This system presents a unique model to study the regulation of metal-cofactor delivery to an organelle. The Arabidopsis thaliana gene AtCCS encodes a functional homolog to yeast Ccs1p/Lys7p, a copper chaperone for SOD. The AtCCS protein was localized to chloroplasts where it may supply copper to the stromal Cu/ZnSOD. AtCCS mRNA expression levels are upregulated in response to Cu-feeding and senescence. We propose that AtCCS expression is regulated to allow the most optimal use of Cu for photosynthesis.

0106 biological sciencesCu/Zn superoxide dismutaseChloroplastsSaccharomyces cerevisiae ProteinsMolecular Sequence DataArabidopsisBiophysicsSaccharomyces cerevisiaeMetallo chaperoneChloroplastModels Biological01 natural sciencesBiochemistryGreen fluorescent proteinSuperoxide dismutase03 medical and health sciencesDownregulation and upregulationGene Expression Regulation PlantStructural BiologyOrganelleGeneticsAmino Acid SequenceRNA MessengerMolecular BiologyGene030304 developmental biology0303 health sciencesbiologyArabidopsis ProteinsGene Expression ProfilingGenetic Complementation TestCell BiologyYeastChloroplastProtein TransportBiochemistryChaperone (protein)Mutationbiology.proteinSequence AlignmentCopperMolecular Chaperones010606 plant biology & botanyFEBS Letters
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Simple learning rules to cope with changing environments

2008

10 pages; International audience; We consider an agent that must choose repeatedly among several actions. Each action has a certain probability of giving the agent an energy reward, and costs may be associated with switching between actions. The agent does not know which action has the highest reward probability, and the probabilities change randomly over time. We study two learning rules that have been widely used to model decision-making processes in animals-one deterministic and the other stochastic. In particular, we examine the influence of the rules' 'learning rate' on the agent's energy gain. We compare the performance of each rule with the best performance attainable when the agent …

0106 biological sciencesError-driven learningExploitComputer scienceEnergy (esotericism)Biomedical EngineeringBiophysicsBioengineeringanimal behavior010603 evolutionary biology01 natural sciencesBiochemistryMulti-armed banditModels Biologicaldecision makingBiomaterials03 medical and health sciences[ INFO.INFO-BI ] Computer Science [cs]/Bioinformatics [q-bio.QM][ SDV.EE.IEO ] Life Sciences [q-bio]/Ecology environment/SymbiosisAnimalsLearningComputer Simulation[ SDV.BIBS ] Life Sciences [q-bio]/Quantitative Methods [q-bio.QM]multi-armed banditEcosystem030304 developmental biologySimple (philosophy)0303 health sciences[ SDE.BE ] Environmental Sciences/Biodiversity and Ecologybusiness.industrydynamic environmentslearning rulesdecision-making[SDV.BIBS]Life Sciences [q-bio]/Quantitative Methods [q-bio.QM]Unlimited periodRange (mathematics)Action (philosophy)Artificial intelligence[SDE.BE]Environmental Sciences/Biodiversity and Ecology[INFO.INFO-BI]Computer Science [cs]/Bioinformatics [q-bio.QM]businessBiotechnologyResearch Article[SDV.EE.IEO]Life Sciences [q-bio]/Ecology environment/Symbiosis
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Behavior of plant plasma membranes under hydrostatic pressure as monitored by fluorescent environment-sensitive probes.

2010

International audience; We monitored the behavior of plasma membrane (PM) isolated from tobacco cells (BY-2) under hydrostatic pressures up to 3.5 kbar at 30 °C, by steady-state fluorescence spectroscopy using the newly introduced environment-sensitive probe F2N12S and also Laurdan and di-4-ANEPPDHQ. The consequences of sterol depletion by methyl-β-cyclodextrin were also studied. We found that application of hydrostatic pressure led to a marked decrease of hydration as probed by F2N12S and to an increase of the generalized polarization excitation (GPex) of Laurdan. We observed that the hydration effect of sterol depletion was maximal between 1 and 1.5 kbar but was much less important at hig…

0106 biological sciencesHIGH HYDROSTATIC PRESSURE[SDV]Life Sciences [q-bio]Hydrostatic pressureStatic ElectricityAnalytical chemistryBiophysicsHAUTES PRESSIONS HYDROSTATIQUEFluorescence PolarizationPyridinium Compounds[SDV.BC]Life Sciences [q-bio]/Cellular Biology01 natural sciencesBiochemistryFluorescence spectroscopyPhase TransitionCell Line03 medical and health scienceschemistry.chemical_compoundPhase (matter)2-NaphthylamineTobaccoHydrostatic Pressure[SDV.BBM]Life Sciences [q-bio]/Biochemistry Molecular BiologySPECTROSCOPIE DE FLUORESCENCEComputingMilieux_MISCELLANEOUS030304 developmental biologyFluorescent Dyes0303 health sciencesMETHYL-β-CYCLODEXTRINPLASMA MEMBRANE3-HydroxyflavoneCell Membranebeta-CyclodextrinsPhytosterolsCell BiologyPHYTOSTEROLFluorescenceSterolMembraneSpectrometry FluorescenceFLUORESCENCE SPECTROSCOPY3-HYDROXYFLAVONEchemistryLaurdanSONDE FLUORECENTELaurates010606 plant biology & botany
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Bridging the Knowledge Gap for the Impact of Non-Thermal Processing on Proteins and Amino Acids

2019

Proteins represent one of the major food components that contribute to a wide range of biophysical functions and dictate the nutritional, sensorial, and shelf-life of food products. Different non-thermal processing technologies (e.g., irradiation, ultrasound, cold plasma, pulsed electric field, and high-pressure treatments) can affect the structure of proteins, and thus their solubility as well as their functional properties. The exposure of hydrophobic groups, unfolding followed by aggregation at high non-thermal treatment intensities, and the formation of new bonds have been reported to promote the modification of structural and functional properties of proteins. Several studies reported …

0106 biological sciencesHealth (social science)ReviewPlant Sciencecold plasmalcsh:Chemical technologyFree amino01 natural sciencesHealth Professions (miscellaneous)MicrobiologyPascalization0404 agricultural biotechnologyProtein structure010608 biotechnologylcsh:TP1-1185Food componentsSolubilityhigh-pressure processing2. Zero hungerchemistry.chemical_classificationultrasound04 agricultural and veterinary sciences040401 food scienceAmino acidpulsed electric fieldschemistryproteins and amino acidsFood productsBiophysicsIrradiationFood ScienceFoods
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Tobacco cells contain a protein, immunologically related to the neutrophil small G protein Rac2 and involved in elicitor-induced oxidative burst.

1997

Abstract Suspension-cultured cells of Nicotiana tabacum generated active oxygen species (AOS) when they were treated with the proteinaceous elicitor, cryptogein. This response was blocked by diphenylene iodonium, an inhibitor of the neutrophil NADPH oxidase. When microsomal extracts of tobacco cells were probed with an antibody directed against the human small G protein Rac2, two immunoreactive proteins were detected at 18.5 and 20.5 kDa. The same experiment performed with cytosolic extracts of tobacco cells led to the observation of a strong immunoreactive protein at 21.5 kDa only in the cryptogein-treated cells. The appearance of this cytosolic protein was related to the production of AOS…

0106 biological sciencesHypersensitive responseNicotiana tabacumBlotting WesternBiophysicsSmall G Protein01 natural sciencesBiochemistrySuperoxide dismutaseFungal Proteins03 medical and health sciencesStructural BiologyGTP-Binding ProteinsTobaccoGeneticsMolecular BiologyCells Cultured030304 developmental biologyRespiratory Burst0303 health sciencesNADPH oxidasebiologyNADPH oxidaseNicotiana tabacumAlgal Proteinsfood and beveragesCell Biologybiology.organism_classificationMolecular biologyOxidative burst3. Good healthElicitorRespiratory burstrac GTP-Binding ProteinsSmall G proteinCytosolPlants ToxicBiochemistrybiology.proteinCryptogeinReactive Oxygen Species010606 plant biology & botanyRac2FEBS letters
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Plasma membrane sterol complexation, generated by filipin, triggers signaling responses in tobacco cells

2010

International audience; The effects of changes in plasma membrane (PM) sterol lateral organization and availability on the control of signaling pathways have been reported in various animal systems, but rarely assessed in plant cells. In the present study, the pentaene macrolide antibiotic filipin III, commonly used in animal systems as a sterol sequestrating agent, was applied to tobacco cells. We show that filipin can be used at a non-lethal concentration that still allows an homogeneous labeling of the plasma membrane and the formation of filipin-sterol complexes at the ultrastructural level. This filipin concentration triggers a rapid and transient NADPH oxidase-dependent production of …

0106 biological sciencesMembrane Fluidity[SDV]Life Sciences [q-bio]CellBiophysicsPLANTEBiology01 natural sciencesFilipinBiochemistry03 medical and health scienceschemistry.chemical_compoundTobaccomedicinepolycyclic compoundsMEMBRANE PLASMIQUEFilipinPhosphorylation030304 developmental biologySterolchemistry.chemical_classification0303 health sciencesReactive oxygen speciesCell DeathCell MembranePhytosterolsPlantCell BiologyPlant cellSterolCell biologymedicine.anatomical_structurechemistrySignalizationPotassiumSIGNALISATIONPhosphorylationlipids (amino acids peptides and proteins)sense organsSignal transductionReactive Oxygen SpeciesLaurdanSignal Transduction010606 plant biology & botanyPlasma membraneBiochimica et Biophysica Acta (BBA) - Biomembranes
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Shedding Light on the Formation and Structure of Kombucha Biofilm Using Two-Photon Fluorescence Microscopy

2021

Kombucha pellicles are often used as inoculum to produce this beverage and have become a signature feature. This cellulosic biofilm produced by acetic acid bacteria (AAB) involves yeasts, which are also part of the kombucha consortia. The role of microbial interactions in thede novoformation and structure of kombucha pellicles was investigated during the 3 days following inoculation, using two-photon microscopy coupled with fluorescent staining. Aggregated yeast cells appear to serve as scaffolding to which bacterial cellulose accumulates. This initial foundation leads to a layered structure characterized by a top cellulose-rich layer and a biomass-rich sublayer. This sublayer is expected t…

0106 biological sciencesMicrobiology (medical)Kombuchatwo-photon fluorescence microscopyinteraction01 natural sciencesMicrobiologybiofilm03 medical and health scienceschemistry.chemical_compound[SPI]Engineering Sciences [physics]010608 biotechnologyMicroscopyCelluloseAcetic acid bacteria030304 developmental biologyOriginal Research0303 health sciencesbiologyBiofilmbiology.organism_classificationTwo photon fluorescenceYeastQR1-502cellulosechemistryBacterial celluloseBiophysicskombucha[SDV.AEN]Life Sciences [q-bio]/Food and NutritionFrontiers in Microbiology
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Evidence for specific, high-affinity binding sites for a proteinaceous elicitor in tobacco plasma membrane

1995

Abstract Binding of cryptogein, a proteinaceous elicitor, was studied on tobacco plasma membrane. The binding of the [125I]cryptogein was saturable, reversible and specific with an apparent Kd of 2 nM. A single class of cryptogein binding sites was found with a sharp optimum pH for binding at about pH 7.0. The high-affinity correlates with cryptogein concentrations required for biological activity in vivo.

0106 biological sciencesNicotiana tabacumBiophysics[SDV.BC]Life Sciences [q-bio]/Cellular Biology01 natural sciencesBiochemistryFungal Proteins03 medical and health sciencesStructural BiologyIn vivoTobaccoGeneticsBinding siteReceptor[SDV.BC] Life Sciences [q-bio]/Cellular BiologyMolecular BiologyComputingMilieux_MISCELLANEOUS030304 developmental biology0303 health sciencesBinding SitesbiologyNicotiana tabacumChemistryAlgal ProteinsCell MembraneElicitinBiological activityCell BiologyElicitorbiology.organism_classification3. Good healthElicitorKineticsPlants ToxicMembraneBiochemistryCryptogeinPlasma membraneReceptor010606 plant biology & botany
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Can biological structures be natural and sustainable capsules?

2015

Flavor and fragrance molecules are used in many industrial fields such as food, cosmetics, tissues, pharmacy, agriculture (pheromones) etc. As most actives have a specific target and are fragile molecules, encapsulation processes have been developed for their use. These technologies are efficient to avoid loss of actives, dissemination out of the target and subsequent pollution, and to protect molecules up to their target. Several processes have been developed responding to the numerous situations encountered (e.g., protection against air, temperature, light, pH; masking or revealing sensorial properties of the molecule; release during the process, in the plate, in the mouth, etc.). However…

0106 biological sciencesOpinionmedia_common.quotation_subjectLab scaleNanotechnology02 engineering and technologyBiology01 natural sciencesCosmeticslcsh:Chemistry010608 biotechnologynatural capsulesactivesComputingMilieux_MISCELLANEOUSmedia_common2. Zero hungerNatural materialsbiological structuresGeneral Chemistry021001 nanoscience & nanotechnologySustainable processprotection[SDV.BBM.BP]Life Sciences [q-bio]/Biochemistry Molecular Biology/BiophysicsChemistrylcsh:QD1-999fragrances13. Climate actionBiological structureSustainabilityBiochemical engineering0210 nano-technologycontrolled releasenatural capsuleGermanic Countriescontrolled release.Frontiers in Chemistry
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