Search results for "plant disease"

showing 10 items of 193 documents

Image analysis methods for assessment of H2O2 production and Plasmopara viticola development in grapevine leaves: application to the evaluation of re…

2013

article i nfo The grapevine downy mildew (Plasmopara viticola) provokes severe damages and destroys the harvest in the absence of an effective protection. Numerous fungicide treatments are thus generally necessary. To promote a sustainable production, alternative strategies of protection including new antifungal molecules, resistant geno- types or elicitor-induced resistance are under trial. To evaluate the relevance of these strategies, resistance tests are required. In this context, three image analysis methods were developed to read the results of tests performed to assessP.viticolasporulation and mycelial development, and H 2 O 2 production in leaves. They have been validated using elic…

0106 biological sciencesMicrobiology (medical)Antifungalmedicine.drug_class[SDV]Life Sciences [q-bio]H2O2Context (language use)01 natural sciencesMicrobiologyImage analysis03 medical and health sciencesPlasmopara viticolamedicinePlant defense against herbivoryImage Processing Computer-Assisted[SDV.BV]Life Sciences [q-bio]/Vegetal BiologyVitisimage analysis;Plasmopara viticola;downy mildew;grapevine;H2O2;resistance testsMolecular Biology[ SDV.MP.MYC ] Life Sciences [q-bio]/Microbiology and Parasitology/MycologyAnalysis method[SDV.MP.MYC]Life Sciences [q-bio]/Microbiology and Parasitology/Mycology030304 developmental biologyDisease ResistancePlant Diseases2. Zero hunger0303 health sciencesResistance (ecology)biologyResistance testsReproducibility of Resultsfood and beveragesHydrogen Peroxidebiology.organism_classificationFungicidePlant LeavesHorticultureAgronomyOomycetesPlasmopara viticola[SDE]Environmental SciencesDowny mildewGrapevine010606 plant biology & botanyDowny mildew
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Discrimination of common defects in loquat fruit cv. ‘Algerie’ using hyperspectral imaging and machine learning techniques

2021

Abstract Loquat (Eriobotrya japonica L.) is an important fruit for the economy of some regions of Spain that is very susceptible to mechanical damage and physiological disorders. These problems depreciate its value and prevent it from being exported. Visible (VIS) and near infrared (NIR) hyperspectral imaging was used to discriminate between external and internal common defects of loquat cv. ‘Algerie’. Two classifiers, random forest (RF) and extreme gradient boost (XGBoost), and different spectral pre-processing techniques were evaluated in terms of their capacity to distinguish between sound and defective features according to three approaches. In the first approach the fruit pixels were c…

0106 biological sciencesN01 Agricultural engineeringEriobotryaHorticulture01 natural sciences040501 horticultureNon-destructiveClassification rateH20 Plant diseasesArtificial visionMathematicsPixelbiologybusiness.industryHyperspectral imagingPattern recognition04 agricultural and veterinary sciencesClassificationbiology.organism_classificationQualityRandom forestEriobotrya japonicaMultivariate analysisN20 Agricultural machinery and equipmentArtificial intelligence0405 other agricultural sciencesbusinessAgronomy and Crop Science010606 plant biology & botanyFood SciencePostharvest Biology and Technology
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Local and systemic mycorrhiza-induced protection against the ectoparasitic nematode Xiphinema index involves priming of defence gene responses in gra…

2012

International audience; The ectoparasitic dagger nematode (Xiphinema index), vector of Grapevine fanleaf virus (GFLV), provokes gall formation and can cause severe damage to the root system of grapevines. Mycorrhiza formation by Glomus (syn. Rhizophagus) intraradices BEG141 reduced both gall formation on roots of the grapevine rootstock SO4 (Vitis berlandierixV. riparia) and nematode number in the surrounding soil. Suppressive effects increased with time and were greater when the nematode was post-inoculated rather than co-inoculated with the arbuscular mycorrhizal (AM) fungus. Using a split-root system, decreased X. index development was shown in mycorrhizal and non-mycorrhizal parts of my…

0106 biological sciencesNematodaPhysiology[SDV]Life Sciences [q-bio]NepovirusPlant Science01 natural sciencesXiphinema indexPlant RootsGlomeromycota03 medical and health sciencesGene Expression Regulation PlantMycorrhizaeBotanyGallAnimalsVitisMycorrhizaGlomeromycotaGlomus030304 developmental biologyPlant DiseasesPlant Proteins2. Zero hunger0303 health sciencesbiologyarbuscular mycorrhizaGrapevine fanleaf virussplit-root systembiology.organism_classificationgrapevineNematode[SDE]Environmental Sciencesbioprotectionxiphinema indexdefence gene expressionRootstock010606 plant biology & botanyResearch Paper
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Spatiotemporal Structure of Host‐Pathogen Interactions in a Metapopulation

2009

International audience; The ecological and evolutionary dynamics of species are influenced by spatiotemporal variation in population size. Unfortunately, we are usually limited in our ability to investigate the numerical dynamics of natural populations across large spatial scales and over long periods of time. Here we combine mechanistic and statistical approaches to reconstruct continuous-time infection dynamics of an obligate fungal pathogen on the basis of discrete-time occurrence data. The pathogen, Podosphaera plantaginis, infects its host plant, Plantago lanceolata, in a metapopulation setting where the presence of the pathogen has been recorded annually for 6 years in similar to 4,00…

0106 biological sciencesPODOSPHAERA PLANTAGINISMetapopulationRELATION PLANTE-PATHOGENEBiologyENCOUNTER RATE010603 evolutionary biology01 natural sciences03 medical and health sciencesAscomycotaHOST-PARASITE INTERACTIONAnimals[INFO]Computer Science [cs]MECHANISTIC-STATISTICAL MODEL[MATH]Mathematics [math]Evolutionary dynamicsPlantagoFinlandEcology Evolution Behavior and SystematicsOverwinteringCoevolutionPlant Diseases030304 developmental biologyLocal adaptation0303 health sciencesObligateHost (biology)EcologyCOEVOLUTIONPopulation sizeBiological EvolutionSURVIVAL PROBABILITYTEMPORAL STABILITYPLANTAGO LANCELOLATAHost-Pathogen InteractionsSeasonsAlgorithmsThe American Naturalist
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The grapevine flagellin receptor VvFLS2 differentially recognizes flagellin-derived epitopes from the endophytic growth-promoting bacterium Burkholde…

2014

International audience; The role of flagellin perception in the context of plant beneficial bacteria still remains unclear. Here, we characterized the flagellin sensing system flg22-FLAGELLIN SENSING 2 (FLS2) in grapevine, and analyzed the flagellin perception in the interaction with the endophytic plant growth-promoting rhizobacterium (PGPR) Burkholderia phytofirmans. The functionality of the grapevine FLS2 receptor, VvFLS2, was demonstrated by complementation assays in the Arabidopsis thaliana fls2 mutant, which restored flg22-induced H2O2 production and growth inhibition. Using synthetic flg22 peptides from different bacterial origins, we compared recognition specificities between VvFLS2…

0106 biological sciencesPhysiologyBurkholderia phytofirmans[SDV]Life Sciences [q-bio]flg22ArabidopsisColony Count MicrobialPlant Sciencemedicine.disease_cause01 natural sciencesEpitopesArabidopsisEndophytesArabidopsis thalianaPlant ImmunityVitisDisease ResistancePlant Proteins0303 health sciencesbiologyBurkholderia phytofirmansmicrobe-associated molecular pattern (MAMP)Xanthomonas campestrisPGPR[SDE]Environmental SciencesBotrytispattern recognition receptor (PRR)BurkholderiaMolecular Sequence DataContext (language use)Receptors Cell SurfaceMicrobiology03 medical and health sciencesSpecies Specificitymedicine[SDV.BV]Life Sciences [q-bio]/Vegetal BiologyComputer SimulationAmino Acid Sequenceflagellin sensing030304 developmental biologyPlant DiseasesfungiCell MembraneGenetic Complementation TestPathogenic bacteriabiology.organism_classificationVitis viniferaMutationbiology.proteinReactive Oxygen SpeciesFlagellinBacteria010606 plant biology & botanyFlagellinThe New phytologistReferences
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Glutathione deficiency of the Arabidopsis mutant pad2-1 affects oxidative stress-related events, defense gene expression and hypersensitive response

2011

L'article original est publié par The American Society of Plant Biologists; International audience; The Arabidopsis (Arabidopsis thaliana) phytoalexin-deficient mutant pad2-1 displays enhanced susceptibility to a broad range of pathogens and herbivorous insects that correlates with deficiencies in the production of camalexin, indole glucosinolates, and salicylic acid (SA). The pad2-1 mutation is localized in the GLUTAMATE-CYSTEINE LIGASE (GCL) gene encoding the first enzyme of glutathione biosynthesis. While pad2-1 glutathione deficiency is not caused by a decrease in GCL transcripts, analysis of GCL protein level revealed that pad2-1 plants contained only 48% of the wild-type protein amoun…

0106 biological sciencesPhysiologyMutantGlutathione reductaseArabidopsisOligosaccharidesPlant Science01 natural scienceschemistry.chemical_compoundAnti-Infective AgentsGene Expression Regulation PlantCamalexinArabidopsis thaliana0303 health sciencesGlutathioneBiochemistryHost-Pathogen InteractionsDisease SusceptibilitySalicylic AcidOxidation-ReductionSignal TransductionHypersensitive responsePhytophthoradisease resistanceBiologyNitric Oxiderespiratory burst oxidase homolog d[SDV.GEN.GPL]Life Sciences [q-bio]/Genetics/Plants genetics03 medical and health sciencesStress PhysiologicalGeneticsPlants Interacting with Other Organismsglutathione reductase030304 developmental biologyPlant DiseasesArabidopsis ProteinsCell MembraneWild typeGlutathioneHydrogen Peroxidebiology.organism_classificationMolecular biologyPlant LeavesOxidative StresschemistryMutationglutathione-s-transferaseIsochorismate synthasebiology.proteinglutamate-cysteine ligaseReactive Oxygen Species010606 plant biology & botany
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Multilocus sequence typing confirms the close genetic inter-relatedness between three distinct flavescence doree phytoplasma strain clusters and grou…

2007

ABSTRACT Vineyards of southern France and northern Italy are affected by the flavescence dorée (FD) phytoplasma, a quarantine pathogen transmitted by the leafhopper of Nearctic origin Scaphoideus titanus . To better trace propagation of FD strains and identify possible passage between the vineyard and wild plant compartments, molecular typing of phytoplasma strains was applied. The sequences of the two genetic loci map and uvrB - degV , along with the sequence of the secY gene, were determined among a collection of FD and FD-related phytoplasmas infecting grapevine, alder, elm, blackberry, and Spanish broom in Europe. Sequence comparisons and phylogenetic analyses consistently indicated the…

0106 biological sciencesPhytoplasmaMolecular Sequence DataAlnus01 natural sciencesApplied Microbiology and BiotechnologyFLAVESCENCE DOREEMALADIE DES PLANTES03 medical and health sciencesPlant MicrobiologyPhylogeneticsMOLLICUTEBotanyPHYTOPLASMEVitisPhylogenyComputingMilieux_MISCELLANEOUS030304 developmental biologyDNA PrimersPlant Diseases2. Zero hungerGenetics[SDV.EE]Life Sciences [q-bio]/Ecology environment0303 health sciencesEcologyPhylogenetic treebiologyBase SequenceJAUNISSEGrapevine yellowsSequence Analysis DNADIVERSITEbiology.organism_classificationScaphoideus titanusLeafhopperEuropeGene ComponentsPhytoplasmaGenes BacterialMultilocus sequence typingFlavescence doréePolymorphism Restriction Fragment Length010606 plant biology & botanyFood ScienceBiotechnology
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Arabidopsis SGS2 and SGS3 genes are required for posttranscriptional gene silencing and natural virus resistance.

2000

AbstractPosttranscriptional gene silencing (PTGS) in plants results from the degradation of mRNAs and shows phenomenological similarities with quelling in fungi and RNAi in animals. Here, we report the isolation of sgs2 and sgs3 Arabidopsis mutants impaired in PTGS. We establish a mechanistic link between PTGS, quelling, and RNAi since the Arabidopsis SGS2 protein is similar to an RNA-dependent RNA polymerase like N. crassa QDE-1, controlling quelling, and C. elegans EGO-1, controlling RNAi. In contrast, SGS3 shows no significant similarity with any known or putative protein, thus defining a specific step of PTGS in plants. Both sgs2 and sgs3 mutants show enhanced susceptibility to virus, d…

0106 biological sciencesRNA-induced transcriptional silencingDNA PlantRNA-induced silencing complexTrans-acting siRNAMolecular Sequence DataPotyvirusArabidopsisRNA-dependent RNA polymerase[SDV.BC]Life Sciences [q-bio]/Cellular BiologyGenes Plant01 natural sciencesCucumovirusGeneral Biochemistry Genetics and Molecular Biology03 medical and health sciencesSolanum lycopersicumRNA interferenceArabidopsisGene expressionGene silencingAmino Acid SequenceGene SilencingCloning MolecularRNA Processing Post-Transcriptional[SDV.BC] Life Sciences [q-bio]/Cellular BiologyComputingMilieux_MISCELLANEOUS030304 developmental biologyPlant DiseasesPlant ProteinsGenetics0303 health sciencesbiologyBase SequenceBiochemistry Genetics and Molecular Biology(all)Arabidopsis ProteinsfungiTobamovirusChromosome MappingGENETIQUEbiology.organism_classificationRNA-Dependent RNA PolymeraseMutagenesis010606 plant biology & botanyCell
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Impact of vector dispersal and host-plant fidelity on the dissemination of an emerging plant pathogen

2012

International audience; Dissemination of vector-transmitted pathogens depend on the survival and dispersal of the vector and the vector's ability to transmit the pathogen, while the host range of vector and pathogen determine the breath of transmission possibilities. In this study, we address how the interaction between dispersal and plant fidelities of a pathogen (stolbur phytoplasma tuf-a) and its vector (Hyalesthes obsoletus: Cixiidae) affect the emergence of the pathogen. Using genetic markers, we analysed the geographic origin and range expansion of both organisms in Western Europe and, specifically, whether the pathogen's dissemination in the northern range is caused by resident vecto…

0106 biological sciencesRange (biology)Population DynamicsPopulation geneticslcsh:Medicine01 natural sciencessanté des plantesphytoplasme du stolburPhyletic PatternsVitisUrtica dioicahyalesthes obsoletuslcsh:SciencePathogenpathologie végétalePhylogenybactérie0303 health sciencesMultidisciplinaryEcologyEcologystolburUrtica dioicaAgricultureBiodiversityHost-Pathogen InteractionPhytoplasmaépidémiologieinsecte vecteuragent pathogèneResearch ArticleDNA BacterialGenetic MarkersPhytoplasmaEvolutionary ProcessesPhytopathology and phytopharmacyEmergenceBiologyDNA MitochondrialMicrobiologyVector Biology03 medical and health sciencesmollicute phytopathogèneIntegrated ControlintéractionEvolutionary SystematicsParasite EvolutionBiologyHybridizationMicrobial Pathogens030304 developmental biologyPlant DiseasesEvolutionary BiologyPopulation BiologyHost (biology)lcsh:Rtransmission de la maladiebiology.organism_classificationPhytopathologie et phytopharmacievariation génétiqueOrganismal Evolution[SDV.BV.PEP]Life Sciences [q-bio]/Vegetal Biology/Phytopathology and phytopharmacyEmerging Infectious DiseasesVector (epidemiology)Microbial EvolutionBiological dispersallcsh:QParasitologyPest ControlPopulation EcologyZoologyEntomologyPopulation Genetics010606 plant biology & botanyCoevolution
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The glutaredoxin ATGRXS13 is required to facilitate Botrytis cinerea infection of Arabidopsis thaliana plants

2011

Summary Botrytis cinerea is a major pre- and post-harvest necrotrophic pathogen with a broad host range that causes substantial crop losses. The plant hormone jasmonic acid (JA) is involved in the basal resistance against this fungus. Despite basal resistance, virulent strains of B. cinerea can cause disease on Arabidopsis thaliana and virulent pathogens can interfere with the metabolism of the host in a way to facilitate infection of the plant. However, plant genes that are required by the pathogen for infection remain poorly described. To find such genes, we have compared the changes in gene expression induced in A. thaliana by JA with those induced after B. cinerea using genome-wide micr…

0106 biological sciencesRegulation of gene expression0303 health sciencesbiologyJasmonic acidfungifood and beveragesVirulenceCell BiologyPlant SciencePlant disease resistancebiology.organism_classification01 natural sciencesMicrobiology03 medical and health scienceschemistry.chemical_compoundchemistryGeneticsArabidopsis thalianaPlant hormonePathogen030304 developmental biology010606 plant biology & botanyBotrytis cinereaThe Plant Journal
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