Search results for "protons"

showing 10 items of 158 documents

Electronic characterisation of the oxidized state of the blue copper protein Rusticyanin by 1 H NMR: Is the axial methionine the dominant influence f…

2001

The oxidized state of rusticyanin, the blue copper protein with the highest redox potential in its class, has been investigated through (1)H nuclear magnetic resonance applied to its cobalt(II) derivative. The assignment of the protons belonging to the coordinated residues has been performed. Many other amino acids situated in the vicinity of the metal ion, including six hydrophobic residues (isoleucine140 and five phenylalanines) have also been identified. The orientation of the main axes of the magnetic susceptibility tensor for the cobalt(II)-rusticyanin as well as its axial, Deltachi(ax), and rhombic, Deltachi(rh), magnetic susceptibility anisotropy components have been determined. A co…

Half-reactionChemistryCopper proteinInorganic chemistrychemistry.chemical_elementCobaltLigandsBiochemistryMagnetic susceptibilityRedoxElectron TransportCrystallographyMethionineBacterial ProteinsAzurinMetalloproteinsRusticyaninProton NMRAnisotropyProtonsAzurinNuclear Magnetic Resonance BiomolecularOxidation-ReductionCobaltCopper
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Probing a Polar Cluster in the Retinal Binding Pocket of Bacteriorhodopsin by a Chemical Design Approach

2012

Bacteriorhodopsin has a polar cluster of amino acids surrounding the retinal molecule, which is responsible for light harvesting to fuel proton pumping. From our previous studies, we have shown that threonine 90 is the pivotal amino acid in this polar cluster, both functionally and structurally. In an attempt to perform a phenotype rescue, we have chemically designed a retinal analogue molecule to compensate the drastic effects of the T90A mutation in bacteriorhodopsin. This analogue substitutes the methyl group at position C(13) of the retinal hydrocarbon chain by and ethyl group (20-methyl retinal). We have analyzed the effect of reconstituting the wild-type and the T90A mutant apoprotein…

Halobacterium salinarumModels MolecularProtein FoldingProtein Denaturation01 natural sciencesBiotecnologiaBiochemistryBiophysics Simulationschemistry.chemical_compoundSensory RhodopsinsHalobacterium salinarum0303 health sciencesMultidisciplinarybiologyProtein StabilityQRTemperatureUltraviolet-visible spectroscopyThermal stabilityBacterial BiochemistryChemistryBiochemistryBacteriorhodopsinsRetinaldehydeMedicineProtonsResearch ArticleSteric effectsHydrogen bondingBioquímicaProtein StructureScienceRetinal bindingBiophysics010402 general chemistryMicrobiologyPhosphates03 medical and health sciencesBiology030304 developmental biologyAspartic AcidBinding SitesAdaptation OcularOrganic ChemistryOrganic SynthesisProteinsChromoproteinsRetinalBacteriorhodopsinBacteriologyBiological TransportChromophorebiology.organism_classification0104 chemical sciencesTransmembrane ProteinschemistryRetinaldehydeBiophysicsbiology.proteinMutant ProteinsPLoS ONE
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Color charge correlations in the proton at NLO: Beyond geometry based intuition

2021

Color charge correlators provide fundamental information about the proton structure. In this Letter, we evaluate numerically two-point color charge correlations in a proton on the light cone including the next-to-leading order corrections due to emission or exchange of a perturbative gluon. The non-perturbative valence quark structure of the proton is modelled in a way consistent with high-$x$ proton structure data. Our results show that the correlator exhibits startlingly non-trivial behavior at large momentum transfer or central impact parameters, and that the color charge correlation depends not only on the impact parameter but also on the relative transverse momentum of the two gluon pr…

High Energy Physics - TheoryQuarkprotonitCOLLISIONSNuclear and High Energy PhysicsProtonFLOWQC1-999FOS: Physical sciencesGeometry114 Physical sciences01 natural sciencesMomentumGLUON DISTRIBUTION-FUNCTIONSHigh Energy Physics - Phenomenology (hep-ph)0103 physical sciencesSCATTERINGFIELDNUCLEON010306 general physicscolor charge correlatorsPhysicsprotons010308 nuclear & particles physicsPhysicsQUARKMomentum transferHigh Energy Physics - PhenomenologyDipoleHigh Energy Physics - Theory (hep-th)Impact parameterNucleonColor chargePhysics Letters B
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Hydrogen-ion driven molecular motions in Cu2+-complexes of a ditopic phenanthrolinophane ligand

2004

One of the first kinetic evaluations of a metal ion interchange between the two coordination sites of a ditopic macrocycle is presented. Garcia-España Monsonis, Enrique, Enrique.Garcia-Es@uv.es ; Soriano Soto, Concepción, Concepcion.Soriano@uv.es ; Verdejo Viu, Begoña, Begona.Verdejo@uv.es

Hydrogen ionHydrogenStereochemistryUNESCO::QUÍMICAKineticschemistry.chemical_elementHydrocarbons CyclicHydrogen ; Cu2 ; Phenanthrolinophane ; Ditopic macrocycleDitopic macrocycleLigands:QUÍMICA [UNESCO]CatalysisIonPhenanthrolinophaneCu2Materials ChemistryMolecular motionOrganometallic CompoundsLigandChemistryUNESCO::QUÍMICA::Química inorgánicaMetals and AlloysGeneral ChemistryHydrogen-Ion Concentration:QUÍMICA::Química inorgánica [UNESCO]Surfaces Coatings and FilmsElectronic Optical and Magnetic MaterialsCrystallographyKineticsCeramics and CompositesProtonsCopperHydrogen
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Transcriptional regulation of the proton translocating NADH dehydrogenase genes (nuoA-N) of Escherichia coli by electron acceptors, electron donors a…

1995

The promoter region and transcriptional regulation of the nuoA-N gene locus encoding the proton-translocating NADH:quinone oxidoreductase was analysed. A 560 bp intergenic region upstream of the nuo locus was followed by a gene (designated lrhA for LysR homologue A) coding for a gene regulator similar to those of the LysR family. Disruption of lrhA did not affect growth (respiratory or non-respiratory) or expression of nuo significantly. Transcriptional regulation of nuo by electron acceptors, electron donors and the transcriptional regulators ArcA, FNR, NarL and NarP, and by IHF (integration host factor) was studied with protein and operon fusions containing the promoter region up to base …

Integration Host FactorsIron-Sulfur ProteinsTranscription GeneticOperonMolecular Sequence DataRepressorLocus (genetics)medicine.disease_causeMicrobiologyElectron TransportBacterial ProteinsOperonmedicineTranscriptional regulationEscherichia coliAmino Acid SequencePromoter Regions GeneticMolecular BiologyEscherichia coliGenebiologyBase SequenceSequence Homology Amino AcidEscherichia coli ProteinsNADH dehydrogenasePromoterNADH DehydrogenaseGene Expression Regulation BacterialMolecular biologyAerobiosisDNA-Binding ProteinsRepressor ProteinsBiochemistrybiology.proteinbacteriaProtonsSequence AlignmentBacterial Outer Membrane ProteinsTranscription FactorsMolecular microbiology
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Determination of metabolite concentrations in human brain tumour biopsy samples using HR-MAS and ERETIC measurements.

2009

Accurate determination of the concentration of the metabolites contained in intact human biopsies of 10 glioblastoma multiforme samples was achieved using one-dimensional 1H high-resolution magic angle spinning (HR-MAS) NMR combined with ERETIC™ (electronic reference to in vivo concentrations) measurements. The amount of sample used ranged from 6.8 to 12.9 mg. Metabolite concentrations were measured in each sample using two methods: with DSS (2,2-dimethyl-2-silapentane-5-sulfonate sodium salt) as an internal reference and with ERETIC™ as an external electronically generated reference. The ERETIC™ signal was shown to be highly reproducible and did not affect the spectral quality. The concent…

Internal standardChromatographyMagnetic Resonance Spectroscopymedicine.diagnostic_testChemistryBrain NeoplasmsMetaboliteAnalytical chemistryHuman brainNeoplasm Proteinschemistry.chemical_compoundmedicine.anatomical_structureIn vivoBiopsymedicineMagic angle spinningBiomarkers TumorMolecular MedicineHumansRadiology Nuclear Medicine and imagingSample preparationProtonsSpectroscopyEx vivoAlgorithmsNMR in biomedicine
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A proton-translocating H+-ATPase is involved in C6 glial pH regulation.

1998

AbstractGlial cells extrude acid equivalents to maintain pHi. Although four mechanisms have been described so far, pHi-control under physiological conditions is still not sufficiently explained. We therefore investigated whether a H+-translocating ATPase is involved in glial pHi homeostasis using an established glial cell line (C6 glioma). In the absence of bicarbonate, the inhibition of H+-ATPases by NEM led to a pHi decrease. The application of a more specific inhibitor (NBD-Cl) showed that the H+-ATPase involved is of the vacuolar type. Inhibition went along with delayed cell swelling. Together with the fact that glial acidification was far more pronounced in Na+-free media, this may ser…

Intracellular FluidBicarbonateATPaseBiophysicsStimulationpHi-regulationBiochemistrychemistry.chemical_compoundEquivalentCell volumemedicineTumor Cells CulturedAnimalsCell SizebiologyChemistryBiological TransportC6 gliomaVacuolar type H+-ATPaseCell BiologyGliomaHydrogen-Ion ConcentrationAmilorideCell biologyCulture MediaRatsProton-Translocating ATPasesmedicine.anatomical_structureCell culturebiology.proteinProtonsAstrocyteAcidsHomeostasismedicine.drugAstrocyteBiochimica et biophysica acta
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QEC value of the superallowed β emitter 42Sc

2017

The QEC value of the superallowed β+ emitter Sc42 has been measured with the JYFLTRAP Penning-trap mass spectrometer at the University of Jyväskylä to be 6426.350(53) keV. This result is at least a factor of four more precise than all previous measurements, which were also inconsistent with one another. As a byproduct we determine the excitation energy of the 7+ isomeric state in Sc42 to be 616.762(46) keV, which deviates by 8σ from the previous measurement. peerReviewed

Ion Traps (Instrumentation)astrofysiikkasuperallowed emittersAntiprotonsAtomic Weightsydinfysiikkaatomipainot
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Gas-phase ion chemistry of protonated melatonin

2009

The gas-phase ion chemistry of protonated melatonin has been investigated by mass spectrometric (MS) techniques involving chemical ionisation, fast atom bombardment and electrospray ionisation. Either naturally-occurring or collision-induced decomposition experiments have been carried out using side chain tetra-deuterium-labelled derivatives, as well as the corresponding N–D derivatives obtained by exchange with D2O. The analysis of experimental results allows definite pathways for the formation of the ion at m/z 174 to be assigned and sheds some more light on the overall fragmentation pathways. Experiments on labelled derivatives evidenced H–D scrambling processes during fragmentation.

IonsElectrospraySpectrometry Mass Electrospray IonizationChemistryElectrospray ionizationInorganic chemistryDeuterium Exchange MeasurementProtonationmelatonin ESI/MS ESI/MS/MSion chemistryGeneral MedicineFast atom bombardmentPhotochemistryAtomic and Molecular Physics and OpticsIonFragmentation (mass spectrometry)AmmoniaTandem Mass SpectrometryAcetamidesProton affinityQuantum TheoryGasesProtonsSpectroscopyGas-phase ion chemistryMelatonin
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A fundamental catalytic difference between zinc and manganese dependent enzymes revealed in a bacterial isatin hydrolase

2018

Scientific reports 8(1), 13104 (2018). doi:10.1038/s41598-018-31259-y

IsatinModels Molecular0301 basic medicineStereochemistryGlutaminelcsh:Medicine010402 general chemistry01 natural sciencesArticleAmidohydrolasesCatalysisEvolution Molecular03 medical and health scienceschemistry.chemical_compoundBacterial ProteinsCatalytic DomainHydrolaseCatalytic triadAmino Acid SequenceRhodobacteraceaelcsh:ScienceConserved SequenceKynureninechemistry.chemical_classificationManganeseMultidisciplinarybiologyAmidohydrolaseHydrolysisIsatinlcsh:RActive site6000104 chemical sciencesZinc030104 developmental biologyEnzymechemistryBiocatalysisArylformamidaseBiocatalysisbiology.proteinQuantum Theorylcsh:QProtonsddc:600
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