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showing 10 items of 855 documents

Can Deliberately Incomplete Gene Sample Augmentation Improve a Phylogeny Estimate for the Advanced Moths and Butterflies (Hexapoda: Lepidoptera)?

2011

Abstract This paper addresses the question of whether one can economically improve the robustness of a molecular phylogeny estimate by increasing gene sampling in only a subset of taxa, without having the analysis invalidated by artifacts arising from large blocks of missing data. Our case study stems from an ongoing effort to resolve poorly understood deeper relationships in the large clade Ditrysia ( > 150,000 species) of the insect order Lepidoptera (butterflies and moths). Seeking to remedy the overall weak support for deeper divergences in an initial study based on five nuclear genes (6.6 kb) in 123 exemplars, we nearly tripled the total gene sample (to 26 genes, 18.4 kb) but only in a…

0106 biological sciencesNonsynonymous substitutionNuclear genetaxon samplingStatistics as TopicGenes Insect010603 evolutionary biology01 natural sciencesmolecular phylogeneticsGenetic Heterogeneitymissing data03 medical and health sciencesDitrysiaGeneticsAnimalsGelechioideaPhylogenyEcology Evolution Behavior and Systematics030304 developmental biologyGenetics0303 health sciencesbiologyNucleotidesHexapodaClassificationnuclear genesbiology.organism_classificationMissing dataLepidopteragene samplingTaxonMacrolepidopteraEvolutionary biologyMolecular phylogeneticsDitrysiaRegular ArticlesSystematic Biology
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Effects of arbuscular mycorrhizal fungi on Gazania rigens pot plant cultivation in a Mediterranean environment

2018

Herbaceous plants used in island beds and borders need to be rapid growing, high performing and maintaining good visual quality during the growing season. Arbuscular mycorrhizal (AM) fungi application is acquiring interest for its beneficial effects on ornamental bedding plants. Gazania rigens is a herbaceous ornamental plant grown for its large daisy-like flowers. The species thrives in the coastal areas of the Mediterranean region, particularly in the mild climate of southern Italy and Sicily, where performs well in summer bedding schemes in sea side gardens even in dry and windy conditions. The aim of this study was to evaluate the effect of inoculation with Rhizophagus irregularis on se…

0106 biological sciencesRhizophagus irregularisGazaniaPerennial plantmicorrhizal inoculationGrowing seasonPlant ScienceSettore AGR/04 - Orticoltura E FloricolturaHorticulture01 natural sciencesbedding plantOrnamental plantTransplantingRhizophagus irregularisperennialbiologyGazania rigensSettore AGR/12 - Patologia Vegetale04 agricultural and veterinary sciencesHerbaceous plantbiology.organism_classificationHorticulture040103 agronomy & agricultureornamental quality0401 agriculture forestry and fisheriesAgronomy and Crop Science010606 plant biology & botany
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Combined phosphate and nitrogen limitation generates a nutrient stress transcriptome favorable for arbuscular mycorrhizal symbiosis in M edicago trun…

2013

International audience; Arbuscular mycorrhizal (AM) symbiosis is stimulated by phosphorus (P) limitation and contributes to P and nitrogen (N) acquisition. However, the effects of combined P and N limitation on AM formation are largely unknown. Medicago truncatula plants were cultivated in the presence or absence of Rhizophagus irregularis (formerly Glomus intraradices) in P-limited (LP), N-limited (LN) or combined P- and N-limited (LPN) conditions, and compared with plants grown in sufficient P and N. The highest AM formation was observed in LPN, linked to systemic signaling by the plant nutrient status. Plant free phosphate concentrations were higher in LPN than in LP, as a result of cros…

0106 biological sciencesRhizophagus irregularisNitrogenPhysiologyPlant SciencePlant Roots01 natural sciencesPhosphatesPhosphorus metabolismTranscriptome03 medical and health scienceschemistry.chemical_compoundNutrientSymbiosisGene Expression Regulation PlantStress PhysiologicalMycorrhizaeMedicago truncatulaBotanyPlant defense against herbivory[SDV.BV]Life Sciences [q-bio]/Vegetal BiologyPhosphate Transport ProteinsGlomeromycotaSymbiosisPlant Proteins030304 developmental biology2. Zero hunger0303 health sciencesbiologyTerpenesfungifood and beveragesPhosphorusPhosphatebiology.organism_classificationMedicago truncatulaErythritolchemistrySugar PhosphatesTranscriptomeSignal Transduction010606 plant biology & botanyNew Phytologist
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Transcriptional responses of Medicago truncatula upon sulfur deficiency stress and arbuscular mycorrhizal symbiosis

2014

International audience; Sulfur plays an essential role in plants' growth and development and in their response to various abiotic and biotic stresses despite its leachability and its very low abundance in the only form that plant roots can uptake (sulfate). It is part of amino acids, glutathione (GSH), thiols of proteins and peptides, membrane sulfolipids, cell walls and secondary products, so reduced availability can drastically alter plant growth and development. The nutritional benefits of symbiotic interactions can help the plant in case of S deficiency. In particular the arbuscular mycorrhizal (AM) interaction improves N, P and S plant nutrition, but the mechanisms behind these exchang…

0106 biological sciencesRhizophagus irregularisS deficiencyTranscription Genetic[SDV]Life Sciences [q-bio]FungusPlant Sciencelcsh:Plant culture01 natural sciencesAM interactionrhizophagus irregularissulfur deficiencyTranscriptomeCell wall03 medical and health sciencesBotanymedicago truncatula;transcriptome;S deficiency;AM interaction;rhizophagus irregularis[SDV.BV]Life Sciences [q-bio]/Vegetal Biologylcsh:SB1-1110Original Research ArticleGene030304 developmental biology2. Zero hungerAbiotic component0303 health sciencescarencebiologyarbuscular mycorrhizafungifood and beveragesmedicago truncatulabiology.organism_classificationMedicago truncatulaArbuscular Mycorrhizal Symbiosis[SDE]Environmental SciencesPlant nutritionnutrition soufréetranscriptome010606 plant biology & botany
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Organelle protein changes in arbuscular mycorrhizal Medicago truncatula roots as deciphered by subcellular proteomics

2019

Prod 2020-8c SPE IPM INRA UB CNRS; The roots of most land plants can enter a symbiotic relationship with arbuscular mycorrhizal (AM) soil‐borne fungi belonging to the phylum Glomeromycota, which improves the mineral nutrition of the host plant. The fungus enters the root through the epidermis and grows into the cortex where it differentiates into a highly branched hyphal structure called the arbuscule. The role of the plant membrane system as the agent for cellular morphogenesis and signal/nutrient exchanges is especially accentuated during AM endosymbiosis. Notably, fungal hyphae are always surrounded by the host membrane, which is referred to as the perifungal membrane around intracellula…

0106 biological sciencesRhizophagus irregularis[SDV]Life Sciences [q-bio]BiologyProteomicsplasma membrane01 natural sciences03 medical and health sciencesroot plastidsBotanyOrganelle[SDV.BV]Life Sciences [q-bio]/Vegetal BiologyRhizophagus irregularismicrosomesShotgun proteomics030304 developmental biology0303 health sciencesspectral countingSpectral countingfungifood and beveragesbiology.organism_classificationMedicago truncatulashotgun proteomicscellular fractionation methods[SDE]Environmental SciencesArbuscular mycorrhizal010606 plant biology & botany
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Genome of an arbuscular mycorrhizal fungus provides insight into the oldest plant symbiosis

2013

International audience; The mutualistic symbiosis involving Glomeromycota, a distinctive phylum of early diverging Fungi, is widely hypothesized to have promoted the evolution of land plants during the middle Paleozoic. These arbuscular mycorrhizal fungi (AMF) perform vital functions in the phosphorus cycle that are fundamental to sustainable crop plant productivity. The unusual biological features of AMF have long fascinated evolutionary biologists. The coenocytic hyphae host a community of hundreds of nuclei and reproduce clonally through large multinucleated spores. It has been suggested that the AMF maintain a stable assemblage of several different genomes during the life cycle, but thi…

0106 biological sciencesRhizophagus irregularismutualism[SDV]Life Sciences [q-bio]Molecular Sequence DataFungus01 natural sciencesGenomecarbohydrate-active enzymes; effector; fungal evolution; glomales; mutualismGlomeromycotaEvolution Molecular03 medical and health sciencesSymbiosisMycorrhizaeBotanyGlomeromycotaSymbiosisGenefungal evolution030304 developmental biologyGenomic organizationMucoromycotina0303 health sciencesMultidisciplinarybiology[ SDV ] Life Sciences [q-bio]Base SequencefungiglomalesSequence Analysis DNA15. Life on landPlantsBiological Sciencesbiology.organism_classificationeffectorEvolutionary biologycarbohydrate-active enzymesGenome Fungal010606 plant biology & botany
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Engineering CRISPR guide RNA riboswitches for in vivo applications

2019

CRISPR-based genome editing provides a simple and scalable toolbox for a variety of therapeutic and biotechnology applications. Whilst the fundamental properties of CRISPR proved easily transferable from the native prokaryotic hosts to eukaryotic and multicellular organisms, the tight control of the CRISPR-editing activity remains a major challenge. Here we summarise recent developments of CRISPR and riboswitch technologies and recommend novel functionalised synthetic-gRNA (sgRNA) designs to achieve inducible and spatiotemporal regulation of CRISPR-based genetic editors in response to cellular or extracellular stimuli. We believe that future advances of these tools will have major implicati…

0106 biological sciencesRiboswitchComputer scienceGenetic enhancementBiomedical EngineeringBioengineeringComputational biology01 natural sciences03 medical and health sciencesSynthetic biologyGenome editing010608 biotechnologyHumansCRISPRClustered Regularly Interspaced Short Palindromic RepeatsGuide RNAQH426030304 developmental biologyGene Editing0303 health sciencesReproducibility of ResultsRNAMulticellular organismRiboswitchGenetic EngineeringRNA Guide KinetoplastidaBiotechnologyCurrent Opinion in Biotechnology
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A laplace type problem for three lattices with non-convex cell

2016

In this paper we consider three lattices with cells represented in Fig. 1, 3 and 5 and we determine the probability that a random segment of constant length intersects a side of lattice. c ⃝2016 All rights reserved.

0209 industrial biotechnologyAlgebra and Number TheoryLaplace transformHigh Energy Physics::Lattice020208 electrical & electronic engineeringMathematical analysisRegular polygon02 engineering and technologyGeometric probabilityRandom setsGeometric probability stochastic geometry random sets random convex sets and integral geometry020901 industrial engineering & automationRandom convex sets and integral geometrySettore MAT/05 - Analisi MatematicaLattice (order)0202 electrical engineering electronic engineering information engineeringStochastic geometrySettore MAT/03 - GeometriaAnalysisMathematics
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New results on stability analysis and stabilization of time-delay continuous Markovian jump systems with partially known rates matrix

2015

Summary In this note, the problems of stability analysis and controller synthesis of Markovian jump systems with time-varying delay and partially known transition rates are investigated via an input–output approach. First, the system under consideration is transformed into an interconnected system, and new results on stochastic scaled small-gain condition for stochastic interconnected systems are established, which are crucial for the problems considered in this paper. Based on the system transformation and the stochastic scaled small-gain theorem, stochastic stability of the original system is examined via the stochastic version of the bounded realness of the transformed forward system. Th…

0209 industrial biotechnologyStochastic stabilityMechanical EngineeringGeneral Chemical EngineeringBiomedical EngineeringRegular polygonStability (learning theory)Aerospace Engineering02 engineering and technologyIndustrial and Manufacturing EngineeringMarkovian jumpMatrix (mathematics)020901 industrial engineering & automationControl and Systems EngineeringSystem transformationControl theoryBounded function0202 electrical engineering electronic engineering information engineering020201 artificial intelligence & image processingElectrical and Electronic EngineeringMathematicsInternational Journal of Robust and Nonlinear Control
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Models for preterm cortical development using non invasive clinical EEG

2017

AbstractThe objective of this study was to evaluate the piglet and the mouse as model systems for preterm cortical development. According to the clinical context, we used non invasive EEG recordings. As a prerequisite, we developed miniaturized Ag/AgCl electrodes for full band EEG recordings in mice and verified that Urethane had no effect on EEG band power. Since mice are born with a “preterm” brain, we evaluated three age groups: P0/P1, P3/P4 and P13/P14. Our aim was to identify EEG patterns in the somatosensory cortex which are distinguishable between developmental stages and represent a physiologic brain development. In mice, we were able to find clear differences between age groups wit…

0301 basic medicineBrain developmentsomatosensory cortexmouse modelContext (language use)Neurosciences. Biological psychiatry. NeuropsychiatryBiologyElectroencephalographySomatosensory system600 Technik Medizin angewandte Wissenschaften::610 Medizin und Gesundheit::616 KrankheitenInterhemispheric coherence03 medical and health sciences0302 clinical medicine616medicineCoherence (signal processing)cortical developmentmedicine.diagnostic_testGeneral Neurosciencephase amplitude couplingNon invasivetelemetrycoherence030104 developmental biologypigletfull band eegpretermNeuroscience030217 neurology & neurosurgeryPhase amplitude couplingRegular ArticlesRC321-571Translational Neuroscience
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