Search results for "Vesicles"

showing 10 items of 482 documents

Mechanisms of RNA loading into exosomes

2015

AbstractUpon fusion of multivesicular bodies (MVBs) with the plasma membrane, intraluminal vesicles (ILVs) are released into the extracellular space as exosomes. Since the lipid composition of the exosomal membrane resembles that of raft microdomains, the inward budding process involves the raft-like region of the MVB limiting membrane. Although published research suggests that cellular RNAs may be selectively sorted into exosomes, the molecular mechanisms remain elusive. In this review, we suggest that there is a continuous interaction of cellular RNAs with the outer (cytoplasmic) surface of MVBs and that the selection for incorporation of these RNAs into ILVs is based on their affinity to…

CeramideBiophysicsBiologyExosomesModels BiologicalBiochemistryIntraluminal vesiclesCeramideMembrane Lipidschemistry.chemical_compoundRaftsMembrane MicrodomainsStructural BiologymicroRNAGeneticsExtracellularAnimalsHumansMolecular BiologyVesicleCell MembraneMembraneMultivesicular BodiesRNA-Binding ProteinsRNAMicroRNACell BiologyRaftMicrovesiclesCell biologychemistryCytoplasmRNAlipids (amino acids peptides and proteins)FEBS Letters
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Automatic detection of large dense-core vesicles in secretory cells and statistical analysis of their intracellular distribution.

2010

Analyzing the morphological appearance and the spatial distribution of large dense-core vesicles (granules) in the cell cytoplasm is central to the understanding of regulated exocytosis. This paper is concerned with the automatic detection of granules and the statistical analysis of their spatial locations in different cell groups. We model the locations of granules of a given cell as a realization of a finite spatial point process and the point patterns associated with the cell groups as replicated point patterns of different spatial point processes. First, an algorithm to segment the granules using electron microscopy images is proposed. Second, the relative locations of the granules with…

Chromaffin CellsInformation Storage and RetrievalBiologyBioinformaticsModels BiologicalSensitivity and SpecificityPoint processExocytosislaw.inventionPattern Recognition AutomatedMicelawArtificial IntelligenceImage Interpretation Computer-AssistedGeneticsAnimalsSecretionChromaffin GranulesComputer SimulationCells CulturedModels StatisticalApplied MathematicsVesicleSecretory VesiclesReproducibility of ResultsImage EnhancementEmpirical distribution functionMicroscopy ElectronAnimals NewbornCytoplasmData Interpretation StatisticalElectron microscopeBiological systemIntracellularAlgorithmsBiotechnologyIEEE/ACM transactions on computational biology and bioinformatics
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Editorial: The Role of the Muscle Secretome in Health and Disease

2020

myokines, exercise, muscle-derived secreted factors, circulating miRNA, extracellular vesicles

Circulating mirnasexerciselcsh:QP1-981Physiologybusiness.industrymyokinesmuscle-derived secreted factors.DiseaseBioinformaticsExtracellular vesicleslcsh:Physiologycirculating miRNAPhysiology (medical)MyokineMedicineextracellular vesiclebusinessextracellular vesiclesmuscle-derived secreted factorsFrontiers in Physiology
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Liquid Biopsy in Diagnosis and Prognosis of High-Grade Gliomas; State-of-the-Art and Literature Review

2022

Gliomas, particularly high-grade gliomas, represent the most common and aggressive tumors of the CNS and are still burdened by high mortality and a very poor prognosis, regardless of the type of therapy. Their diagnosis and monitoring rely on imaging techniques and direct biopsy of the pathological tissue; however, both procedures have inherent limitations. To address these limitations, liquid biopsies have been proposed in this field. They could represent an innovative tool that could help clinicians in the early diagnosis, monitoring, and prognosis of these tumors. Furthermore, the rapid development of next-generation sequencing (NGS) technologies has led to a significant reduction in seq…

Circulating tumor DNAHigh-grade gliomaLiquid biopsySpace and Planetary ScienceSettore MED/27 - NeurochirurgiaNext-generation sequencingPaleontologyExtracellular vesiclesMiRNAGBMGeneral Biochemistry Genetics and Molecular BiologyEcology Evolution Behavior and Systematics
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Sorting signals in the cytosolic tail of plant p24 proteins involved in the interaction with the COPII coat.

2004

The ability of the cytosolic tail of a plant p24 protein to bind COPI and COPII subunits from plant and animal sources in vitro has been examined. We have found that a dihydrophobic motif in the -7,-8 position (relative to the cytosolic carboxy-terminus), which strongly cooperates with a dilysine motif in the -3,-4 position for COPI binding, is required for COPII binding. In addition, we show that COPI and COPII coat proteins from plant cytosol compete for binding to the sorting motifs in these tails. Only in the absence of the dilysine motif in the -3,-4 position or after COPI depletion could we observe COPII binding to the p24 tail. This competition is not observed when using rat liver cy…

CoatPhysiologyAmino Acid MotifsArabidopsisReceptors Cytoplasmic and NuclearPlant ScienceBiologyCoat Protein Complex ICytosolAnimalsCOPIIBinding SitesVesicular-tubular clusterArabidopsis ProteinsCell BiologyGeneral MedicineCOPIPlant cellIn vitroPeptide FragmentsCell biologyRatsCytosolProtein TransportRat liverCOP-Coated VesiclesProtein BindingSignal TransductionPlantcell physiology
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EXTRACELLULAR VESCICLES DERIVED FROM GUT MICROBIOTA IN INFLAMMATORY BOWEL DISEASE AND COLORECTAL CANCER

2021

The human gut microbiome encompasses inter alia, the myriad bacterial species that create the optimal host-micro-organism balance essential for normal metabolic and immune function. Various lines of evidence suggest that dys-regulation of the microbiota-host interaction is linked to pathologies such as inflammatory bowel disease (IBD) and colorectal cancer (CRC). Extracellular vesicles (EVs), found in virtually all body fluids and produced by both eukaryotic cells and bacteria are involved in cell-cell communication and crosstalk mechanisms, such as the immune response, barrier function and intestinal flora. This review highlights advancements in knowledge of the functional role that EVs ma…

Colorectal cancerGut microbiotaGut floraInflammatory bowel diseaseInflammatory bowel diseaseGeneral Biochemistry Genetics and Molecular BiologyExtracellular VesiclesImmune systemFlora (microbiology)HumansMedicineMicrobiomeBarrier functionBacteriabiologybusiness.industryMicrobiotaRInflammatory Bowel Diseasesmedicine.diseasebiology.organism_classificationColorectal cancerdigestive system diseasesGastrointestinal MicrobiomeCrosstalk (biology)ImmunologyMedicinecolo-rectal cancer extracellular vescicles gut microbiota inflammatory bowel dseaseColorectal Neoplasmsbusiness
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Quantitative Analysis of Dynamic Association in Live Biological Fluorescent Samples

2014

Determining vesicle localization and association in live microscopy may be challenging due to non-simultaneous imaging of rapidly moving objects with two excitation channels. Besides errors due to movement of objects, imaging may also introduce shifting between the image channels, and traditional colocalization methods cannot handle such situations. Our approach to quantifying the association between tagged proteins is to use an object-based method where the exact match of object locations is not assumed. Point-pattern matching provides a measure of correspondence between two point-sets under various changes between the sets. Thus, it can be used for robust quantitative analysis of vesicle …

Computer and Information SciencesFluorescence-lifetime imaging microscopyMatching (graph theory)Cell SurvivalImage ProcessingAssociation (object-oriented programming)SciencerakkulatBioinformaticsTime-Lapse ImagingFluorescenceImage (mathematics)cellular structuresfluorescence imagingCell Line TumorMolecular Cell BiologyalgoritmitHumansComputer SimulationkuvantamismenetelmätPhysicsta113MicroscopyvesiclesMultidisciplinarySoftware Toolsbusiness.industryCytoplasmic VesiclesQRta1182Biology and Life SciencesSoftware EngineeringColocalizationExperimental dataPattern recognitionCell BiologyObject (computer science)imaging techniquesMolecular ImagingfluoresenssimikroskopiaSignal ProcessingEngineering and TechnologyMedicineArtificial intelligenceCellular Structures and OrganellesbusinessVesicle localizationResearch ArticlePLoS ONE
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Cytoplasmic microvesicles in chromophobe cell renal carcinoma demonstrated by freeze fracture

1987

In the chromophobe cell type of renal carcinoma, cytoplasmic microvesicles (frequently with "inner vesicles") demonstrable by transmission electron microscopy are one of the most important diagnostic features. The present paper reports on these microvesicles in freeze fracture replicas. Their diameter is mainly between 140 and 300 micron, but smaller and very much larger vesicles may also occur. The vesicle membrane is devoid of, or contains only scanty intramembranous particles. Cytoplasmic invaginations, probably the precursors of "inner vesicles" can also be detected. Connections with the agranular endoplasmic reticulum, mitochondria or other cell components could not be documented. Larg…

CytoplasmPathologymedicine.medical_specialtyKidneyVesicleCellChromophobe cellVacuoleBiologyMitochondrionKidney NeoplasmsMicrovesiclesmedicine.anatomical_structureCytoplasmmedicineFreeze FracturingHumansCarcinoma Renal CellVirchows Archiv B Cell Pathology Including Molecular Pathology
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Synaptic release of zinc from brain slices: factors governing release, imaging, and accurate calculation of concentration.

2006

Cerebrocortical neurons that store and release zinc synaptically are widely recognized as critical in maintenance of cortical excitability and in certain forms of brain injury and disease. Through the last 20 years, this synaptic release has been observed directly or indirectly and reported in more than a score of publications from over a dozen laboratories in eight countries. However, the concentration of zinc released synaptically has not been established with final certainty. In the present work we have considered six aspects of the methods for studying release that can affect the magnitude of zinc release, the imaging of the release, and the calculated concentration of released zinc. We…

Diagnostic ImagingPyridinesColoring agentschemistry.chemical_elementZincIn Vitro TechniquesRats Sprague-DawleyPregnancyAnimalsAcido edeticoPolycyclic CompoundsRats WistarColoring AgentsEdetic AcidFluorescent DyesNeuronsExtramuralChemistryGeneral NeuroscienceTemperatureBrainOriginal dataRatsSprague dawleyZincDentate GyrusMossy Fibers HippocampalSynapsesFemaleSynaptic VesiclesNeuroscienceJournal of neuroscience methods
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Advanced strategy to exploit wine-making waste by manufacturing antioxidant and prebiotic fibre-enriched vesicles for intestinal health.

2020

Grape extract-loaded fibre-enriched vesicles, nutriosomes, were prepared by combining antioxidant extracts obtained from grape pomaces and a prebiotic, soluble fibre (Nutriose®FM06). The nutriosomes were small in size (from ∼140 to 260 nm), homogeneous (polydispersity index < 0.2) and highly negative (∼ −79 mV). The vesicles were highly stable during 12 months of storage at 25 °C. When diluted with warmed (37 °C) acidic medium (pH 1.2) of high ionic strength, the vesicles only displayed an increase of the mean diameter and a low release of the extract, which were dependent on Nutriose concentration. The formulations were highly biocompatible and able to protect intestinal cells (Caco-2) fro…

Dietary FiberAntioxidantmedicine.medical_treatmentWine02 engineering and technologyGut flora01 natural sciencesAntioxidantsMiceColloid and Surface ChemistryPhospholipid vesiclesFood scienceMice Inbred BALB CSoluble fibre010304 chemical physicsbiologyChemistryVesiclefood and beveragesSurfaces and InterfacesGeneral Medicine021001 nanoscience & nanotechnologyGrape pomaceIntestinal cellsIntestinesHomogeneousFemale0210 nano-technologyBiotechnologyPhospholipid vesiclesCell SurvivalSurface PropertiesGut microbiotaIn vivo studiesAntioxidant activity0103 physical sciencesmedicineAnimalsHumansPrebiotic activityPhysical and Theoretical ChemistryParticle SizeWineWaste ProductsPrebioticfungibiology.organism_classificationGastrointestinal MicrobiomeOxidative StressPrebioticsNutriosomesCaco-2 CellsColloids and surfaces. B, Biointerfaces
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