Search results for "bioinformatics"
showing 10 items of 1632 documents
Insights into genome plasticity of the wine-making bacterium Oenococcus oeni strain ATCC BAA-1163 by decryption of its whole genome.
2008
International audience; Studying genomes of O. oeni strains having opposite oenological aptitudes is important for understanding why this lactic acid bacterium involved in malolactic fermentation is so well adapted to wine. Here, the genome of a strain ATCC BAA-1163, is described and compared with the recently reported genome of the better wine-adapted strain PSU-1. The BAA-1163 genome (8X) was obtained by shotgun sequencing and Phrap assembling. Compact and 62% AT-rich, it consists of a circular 1,792,103-bp chromosome and a 3,948-bp plasmid. It was analysed through a CAAT-Box annotation platform and manually inspected. A total of 51 RNA genes were detected, including two rRNA operons (the…
Numerical models contribute to expand the sweet taste chemical space
2021
Optimisation et implémentation de méthodes bio-inspirées d'extraction de caractéristiques pour la reconnaissance d'objets visuels
2016
Industry has growing needs for so-called “intelligent systems”, capable of not only ac-quire data, but also to analyse it and to make decisions accordingly. Such systems areparticularly useful for video-surveillance, in which case alarms must be raised in case ofan intrusion. For cost saving and power consumption reasons, it is better to perform thatprocess as close to the sensor as possible. To address that issue, a promising approach isto use bio-inspired frameworks, which consist in applying computational biology modelsto industrial applications. The work carried out during that thesis consisted in select-ing bio-inspired feature extraction frameworks, and to optimize them with the aim t…
Whole mirror duplication-random loss model and pattern avoiding permutations
2010
International audience; In this paper we study the problem of the whole mirror duplication-random loss model in terms of pattern avoiding permutations. We prove that the class of permutations obtained with this model after a given number p of duplications of the identity is the class of permutations avoiding the alternating permutations of length p2+1. We also compute the number of duplications necessary and sufficient to obtain any permutation of length n. We provide two efficient algorithms to reconstitute a possible scenario of whole mirror duplications from identity to any permutation of length n. One of them uses the well-known binary reflected Gray code (Gray, 1953). Other relative mo…
Approche préventive de la qualité des données d'importation dans le contexte de la protéomique clinique
2011
International audience; Dans le domaine biomédical, la protéomique est confrontée à des sources de données de plus en plus nombreuses et à des volumes de données très importants du fait de la multiplication des technologies dites à haut débit. L'hétérogénéité de la provenance des données implique de fait une hétérogénéité dans la représentation et le contenu de ces données. Les données peuvent aussi se révéler incorrectes ce qui engendre des erreurs sur les conclusions des expériences protéomiques. Notre approche a pour objectif de garantir la qualité initiale des données lors de leur importation dans un système d'information dédié à la protéomique. Elle est basée sur le couplage entre des …
CeLL, an agent based model for exploring the spatial influence influence of climate change on Lobesia botrana population dynamics
2016
International audience; The European Grapevine moth (Lobesia botrana) is one of the most noxious vineyard-pests in the European and Mediterranean area. Its larvae feed on grapevine flowers and berries, and usually cause considerable damage, also by facilitating saphrophytic infections to berries.The biology of L. botrana has been investigated since the 80s. A number of studies has tested its physiology and behaviour in experimental conditions (Hurtrel et Thiéry 1999), in field conditions (Stockel et al. 1994), and using mathematical modelling techniques. Whereas the modelling approaches that have been proposed in the literature are hetereogeneus they generally focus on the phenology and pop…
Analysis of headspace of flavour compounds using PTR-ToF Mass Spectrometry: optimisation of acquisition parameters
2011
National audience
Decoding sweet taste from chemical structures
2019
International audience
L'annuaire des Centres de Ressources Biologiques français
2011
International audience
The I3-CRB project and the French biological ressources centers
2010
International audience