Search results for "conformation"

showing 10 items of 1414 documents

cis-Dichloridobis(2-isocyanophenyl 4-methoxybenzoate)palladium(II) chloroform monosolvate

2012

In the title compound, [PdCl2(C15H11NO3)2]·CHCl3, the PdII atom adopts a slightly distorted square-planar coordination geometry composed of two Cl atoms in cis positions and two C atoms from isocyanophenyl ligands. The molecular conformation is stabilized by π–π stacking interactions [shortest centroid–centroid distance = 3.600 (1) Å] between substituted benzene rings of different ligands. The crystal packing is characterized by C—H...O and C—H...Cl interactions involving the chloroform solvent molecules.

Metal-Organic PapersCrystallographyChemistryStackingchemistry.chemical_elementGeneral ChemistryCondensed Matter PhysicsBioinformaticsMedicinal chemistrychloroform solvent moleculesSolventCrystalchemistry.chemical_compoundmolecular conformationQD901-999Atomsingle-crystal X-ray studyGeneral Materials ScienceBenzeneta116crystal packingCoordination geometryPalladiumActa Crystallographica. Section E: Structure Reports Online
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Bis(cyclohexylammonium) tetrachlorido(oxalato)stannate(IV)

2013

The title salt, (C6H14N)2[Sn(C2O4)Cl4], was obtained as a by-product from the reaction between 2C6H14N+·C2O42−·1.5H2O and SnCl2·2H2O. The cyclohexylammonium cation has a chair conformation. The complex anion consists of an oxalate anion chelating the SnCl4 moiety, resulting in a distorted octahedral coordination sphere of the SnIV atom with the O atoms in equatorial cis positions. In the crystal, cations and anions are linked through N—H...O and N—H...Cl interactions into a layered arrangement parallel to (100).

Metal-Organic Paperschemistry.chemical_classificationCoordination sphereStannatebiologyCyclohexane conformationSalt (chemistry)General ChemistryCondensed Matter Physicsbiology.organism_classificationMedicinal chemistrylcsh:Chemistrychemistry.chemical_compoundchemistrylcsh:QD1-999TetraMoietyGeneral Materials ScienceAmmoniumChelationActa Crystallographica Section E
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Darstellung und struktur von (EtO)2P(O)CH2Si(Me)2CH2SnMe2Cl—ein sechsringchelat mit sesselkonformation und PO ⋯ Sn(Cl)Me2CH2-trigonaler bipyramide a…

1992

Abstract The title compound (EtO)2P(O)CH2Si(Me)2CH2SnMe2Cl (2) has been synthesized by reaction of the new functional Grignard reagent (EtO)2P(O)CH2CH2SiMe2CH2MgCl with Me3SnCl and subsequent treatment with Me2SnCl2. 2 crystallizes in the non-centrosymmetric orthorhombic space group P212121. The structure was refined to a final R-value of 0.0476. The tin atom is pentacoordinated and exhibits a nearly ideal trigonal-bipyramidal coordination (SnCl 2.518(3), Sn ⋯ O 2.371(5) A). This coordination results from a 6-membered chelate involving a chair conformation. The structure of 2 is compared with analogous compounds containing a PO ⋯ Sn- or CO ⋯ Sn-coordination in the first place and a noncy…

MetalationStereochemistryOrganic ChemistryCyclohexane conformationchemistry.chemical_elementCrystal structureRing (chemistry)BiochemistryMedicinal chemistryInorganic ChemistrychemistryX-ray crystallographyMaterials ChemistryMoleculeOrthorhombic crystal systemPhysical and Theoretical ChemistryTinJournal of Organometallic Chemistry
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1H and 13C NMR signal assignment of synthetic (-)-methyl thyrsiflorin B acetate, (-)-thyrsiflorin C and several scopadulane derivatives.

2005

The 1H and 13C NMR signal assignment of the data of 13 scopadulane-type diterpenes is reported. It was based on one- and two- dimensional NMR techniques which included 1H, 13C, DEPT, HMQC and 1D NOE difference spectroscopy. Copyright © 2005 John Wiley & Sons, Ltd.

Methyl thyrsiflorin B acetateCarbon IsotopesMagnetic Resonance SpectroscopyStereochemistryChemistryMolecular ConformationStereoisomerismGeneral ChemistryCarbon-13 NMRDEPTReference StandardsSignalThyrsiflorin CProton NMRGeneral Materials ScienceDiterpenesProtonsSpectroscopyMagnetic resonance in chemistry : MRC
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Genome characterisation of two Ljungan virus isolates from wild bank voles (Myodes glareolus) in Sweden

2015

Ljungan virus (LV) (family Picornaviridae, genus Parechovirus) is a suspected zoonotic pathogen with associations to human disease in Sweden. LV is a single-stranded RNA virus with a positive sense genome. There are five published Ljungan virus strains, three isolated from Sweden and two from America, and are classified into four genotypes. A further two strains described here were isolated from wild bank voles (Myodes glareolus) caught in Vastmanlands county, Sweden in 1994. These strains were sequenced using next generation pyrosequencing technology on the GS454flx platform. Genetic and phylogenetic analysis of the obtained genomes confirms isolates LV340 and LV342 as two new putative mem…

Microbiology (medical)Genes ViralGenotypeGS454ParechovirusGenome ViralMicrobiologyGenomeEvolution MolecularPhylogeneticsUntranslated Regionspositive selectionGenotypeevolutionMyodes glareolusGeneticsAnimalsSelection GeneticMolecular BiologyEcology Evolution Behavior and SystematicsPhylogenyGeneticsSwedenPicornaviridae InfectionsbiologyPhylogenetic treeArvicolinaeta1183RNA virusLjungan virusbiology.organism_classificationVirologyInfectious DiseasesLjungan virusArvicolinaeVP3ParechovirusNucleic Acid ConformationRNA Viralta1181Infection, Genetics and Evolution
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Characterization of the length polymorphism in the A + T-rich region of the Drosophila obscura group species

1993

In the twelve Drosophila obscura group species studied, belonging to the affinis, obscura, and pseudoobscura subgroups, the mitochondrial DNA length ranges from 15.8 to 17.2 kb. This length polymorphism is mainly due to insertions/deletions in the variable region of the A + T-rich region. In addition, one species (D. tristis) possess a tandem duplication of a 470-bp fragment that contains the replication origin. The same duplication has occurred at least twice in the Drosophila evolutionary history due to the fact that the repetition is analogous to repetitions found in the four species of the D. melanogaster complex. By comparing the nucleotide sequence of the conserved region in D. ambigu…

Mitochondrial DNAMolecular Sequence DataRestriction MappingDNA RecombinantDNA MitochondrialConserved sequenceSpecies SpecificityMolecular evolutionDrosophilidaeSequence Homology Nucleic AcidGene duplicationGeneticsAnimalsMolecular BiologyEcology Evolution Behavior and SystematicsGeneticsPolymorphism GeneticbiologyBase SequenceAdenineNucleic acid sequencebiology.organism_classificationNucleic Acid ConformationDrosophilaTandem exon duplicationDrosophila obscuraSequence AlignmentPlasmidsThymidine
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The complete mitochondrial genome of Bactrocera biguttula (Bezzi) (Diptera: Tephritidae) and phylogenetic relationships with other Dacini

2018

Bactrocera biguttula is an African olive fruit fly that does not attack cultivated olives but rather develops in the fruits of wild species of Olea and Noronhia. The complete mitochondrial genome of an individual specimen was characterized in comparison to other Bactrocera. The phylogenetic relationships of B. biguttula with other Dacini were investigated, with special focus on B. oleae, an agricultural pest known to attack cultivated and wild olives. The sequence had a total length of 15,829 bp, and included the typical features of insect mitogenomes, similarly to the other Bactrocera analysed. Start codons included ATG, ATC, ATT, and TCG (in COI). The majority of stop codons (TAA) were fu…

Mitochondrial DNAOlive fruit fly02 engineering and technologyBiochemistryOpen Reading Frames03 medical and health sciencesComplete sequenceRNA TransferStructural BiologyPhylogeneticsTephritidaeAnimalsBactroceraCodonMolecular BiologyPhylogeny030304 developmental biologyBase CompositionLikelihood Functions0303 health sciencesPhylogenetic treebiologyTephritidaeBayes TheoremGeneral MedicineAfrican olive fruit fly021001 nanoscience & nanotechnologybiology.organism_classificationStop codonMitogenomeWild olivesEvolutionary biologyGenome MitochondrialNucleic Acid ConformationDNA Circular0210 nano-technologyInternational Journal of Biological Macromolecules
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The mitochondrial genome of fission yeast: inability of all introns to splice autocatalytically, and construction and characterization of an intronle…

1991

In this paper we report the inability of four group I introns in the gene encoding subunit I of cytochrome c oxidase (cox1) and the group II intron in the apocytochrome b gene (cob) to splice autocatalytically. Furthermore we present the characterization of the first cox1 intron in the mutator strain anar-14 and the construction and characterization of strains with intronless mitochondrial genomes. We provide evidence that removal of introns at the DNA level (termed DNA splicing) is dependent on an active RNA maturase. Finally we demonstrate that the absence of introns does not abolish homologous mitochondrial recombination.

Mitochondrial DNARNA MitochondrialRNA SplicingMolecular Sequence DataBiologyDNA MitochondrialGenomeElectron Transport Complex IVConsensus SequenceSchizosaccharomycesGeneticsGroup I catalytic intronAmino Acid SequenceCloning MolecularMolecular BiologyGeneGeneticsBase SequenceIntronRNAGroup II intronCytochromes bCytochrome b GroupIntronsMitochondriaRNA splicingNucleic Acid ConformationRNAApoproteinsMolecular and General Genetics MGG
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Probing in cell protein structural changes with time-resolved X-ray scattering

2012

International audience; Investigating protein structural changes inside the cell is a major goal in molecular biology. Here we show that time-resolved wide-angle X-ray scattering is a valuable tool for this purpose. Hemoglobin has been chosen as a model system and its tertiary and quaternary conformational changes following laser flash-photolysis have been tracked in intact red blood cells with nanosecond time resolution.

Model system010402 general chemistry01 natural scienceslaw.invention03 medical and health scienceslaw030304 developmental biology0303 health sciencesChemistryScatteringX-rayTime resolutionin cell studieGeneral ChemistryNanosecondX-ray scatteringCondensed Matter PhysicsLaserConformational changeSettore FIS/07 - Fisica Applicata(Beni Culturali Ambientali Biol.e Medicin)0104 chemical sciencesCrystallographyChemical physicsAllosteric transitionProtein dynamicsense organs[PHYS.COND.CM-SCM]Physics [physics]/Condensed Matter [cond-mat]/Soft Condensed Matter [cond-mat.soft]
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Nitric oxide inhibits the ATPase activity of the chaperone-like AAA+ ATPase CDC48, a target for S-nitrosylation in cryptogein signalling in tobacco c…

2012

NO has important physiological functions in plants, including the adaptative response to pathogen attack. We previously demonstrated that cryptogein, an elicitor of defence reaction produced by the oomycete Phytophthora cryptogea , triggers NO synthesis in tobacco. To decipher the role of NO in tobacco cells elicited by cryptogein, in the present study we performed a proteomic approach in order to identify proteins undergoing S-nitrosylation. We provided evidence that cryptogein induced the S-nitrosylation of several proteins and identified 11 candidates, including CDC48 (cell division cycle 48), a member of the AAA+ ATPase (ATPase associated with various cellular activities) family. In vit…

Models Molecular0106 biological sciencesProtein Conformation[SDV]Life Sciences [q-bio]Nicotiana tabacumATPaseMolecular Sequence DataCell Cycle ProteinsNitric Oxide01 natural sciencesBiochemistrycryptogeinFungal Proteins03 medical and health sciencesValosin Containing ProteinTobaccoAmino Acid Sequencenitric oxide (no)Molecular BiologyPlant Proteins030304 developmental biologyAdenosine Triphosphatases0303 health sciencesbiologyWalker motifsCell BiologyS-Nitrosylationcell division cycle 48 (cdc48)Biotic stressbiology.organism_classificationAAA proteinsProtein Structure TertiaryElicitorBiochemistryChaperone (protein)[SDE]Environmental Sciencesbiology.proteins-nitrosylationplant defence responses010606 plant biology & botanyBiochemical Journal
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