Search results for "ribosome"

showing 10 items of 109 documents

Proteins from rat liver cytosol which stimulate mRNA transport. Purification and interactions with the nuclear envelope mRNA translocation system.

1986

Two polysome-associated proteins with particular affinities for poly(A) have been purified from rat liver. These proteins stimulate the efflux of mRNA from isolated nuclei in conditions under which such efflux closely stimulates mRNA transport in vivo, and they are therefore considered as mRNA-transport-stimulatory proteins. Their interaction with the mRNA-translocation system in isolated nuclear envelopes has been studied. The results are generally consistent with the most recently proposed kinetic model of mRNA translocation. One protein, P58, has not been described previously. It inhibits the protein kinase that down-regulates the NTPase, it enhances the NTPase activity in both the prese…

MaleNucleocytoplasmic Transport ProteinsNuclear EnvelopeRNA-binding proteinBiologyBiochemistryCytosolPhosphoprotein PhosphatasesMRNA transportAnimalsRNA MessengerProtein kinase AMessenger RNANucleocytoplasmic Transport ProteinsRNARNA-Binding ProteinsBiological TransportRats Inbred StrainsNucleoside-TriphosphatasePhosphoric Monoester HydrolasesCell biologyRatsCytosolBiochemistryLiverPolyribosomesPhosphorylationCarrier ProteinsPoly AProtein KinasesEuropean journal of biochemistry
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Electron microscopic study on the larval and adult corpus allatum of Oncopeltus fasciatus dallas (insecta, heteroptera)

1973

1. The ultrastructure of the corpora allata of last larval instars and adults of Oncopeltus was studied. The unpaired gland undergoes submicroscopic alterations and shows signs of degradation in old animals. The organ is partly covered and penetrated by corpus cardiacum tissue. Axons with different types of neurosecretory granules form synaptoid contacts with the corpus allatum cells.

Maleendocrine systemInsectaHistologyGolgi ApparatusBiologyEndoplasmic ReticulumPathology and Forensic MedicineSex FactorsAnimalsElectron microscopicCell NucleusLarvaHeteropteraCell BiologyAnatomybiology.organism_classificationNeurosecretory SystemsCorpus CardiacumAxonsJuvenile HormonesMicroscopy ElectronUltrastructureInstarFemaleCorpus allatumLysosomesRibosomesCell NucleolusNeurosecretory granulesZeitschrift f�r Zellforschung und Mikroskopische Anatomie
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Ultrastructure of differentiating hemocytes in the embryo of Oncopeltus fasciatus dallas (insecta, heteroptera).

1978

The hemocytes of Oncopeltus differentiate rather early during embryogenesis. They are segregated by the mesoderm soon after its formation (about 50h after egg deposition). Newly segregated hemocytes show the “typical” features of “embryonic” cells: many free ribosomes, a few strands of rough ER, the cisternae of which are considerably distended, electron lucent vacuoles around the periphery, and glycogen deposits. A few hours thereafter the hemocytes undergo striking subcellular changes. First, glycogen, electron lucent vacuoles and rough ER disappear and phagocytotic activity can be observed. Golgi complexes become well expressed and give rise to electron dense vesicles which fuse to large…

MesodermHistologyHemocytesInsectaGolgi ApparatusVacuoleBiologyEndoplasmic ReticulumPathology and Forensic Medicinesymbols.namesakePhagocytosismedicineAnimalsInclusion BodiesBlood CellsEndoplasmic reticulumVesicleEmbryogenesisCell DifferentiationCell BiologyAnatomyGolgi apparatusCell biologymedicine.anatomical_structureCytoplasmLarvaVacuolessymbolsUltrastructureRibosomesGlycogenCell and tissue research
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Messenger RNA of the large subunit of ribulose-1,5-bisphosphate carboxylase from Chlamydomonas reinhardi. Isolation and properties.

1979

Polysomes specifically synthesizing the large subunit of ribulose-1,5-bisphosphate carboxylase were isolated from Chlamydomonas reinhardi cells by the indirect immunoprecipitation method. Electrophoretic analysis showed that the immunoprecipitated polysomes were of chloroplast origin. The mRNA coding for the large subunit which was purified from immunoprecipitated polysomes migrated at the 19-S position on sucrose density gradients, and its molecular weight was estimated to be 7.3 x 10(5) by acid-urea/agarose gel electrophoresis. The mRNA was translated in vivo with a cell-free protein-synthesizing system derived from Escherichia coli to give full-length large-subunit polypeptides.

Messenger RNARibulose 15-bisphosphateImmunoprecipitationCarboxy-LyasesProtein subunitRibulose-Bisphosphate CarboxylaseChlamydomonasChlamydomonasBiologybiology.organism_classificationBiochemistryMolecular biologyPyruvate carboxylaseMolecular Weightchemistry.chemical_compoundBiochemistrychemistryPolysomePolyribosomesProtein BiosynthesisAgarose gel electrophoresisEscherichia coliRNA MessengerEuropean journal of biochemistry
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Candida albicans UBI3 and UBI4 promoter regions confer differential regulation of invertase production to Saccharomyces cerevisiae cells in response …

2002

Candida albicans ubiquitin genes UBI3 and UBI4 encode a ubiquitin-hybrid protein involved in ribosome biogenesis and polyubiquitin, respectively. In this work we show that UBI3 and UBI4 promoter regions confer differentialexpr ession consistent with the function of their encoded gene products. Hybrid genes were constructed containing the SUC2 coding region under the controlof UBI3 or UBI4 promoters in the yeast vector pLC7. Invertase production in Saccharomyces cerevisiae transformants was differentially regulated: the UBI4 promoter was induced by stress conditions (thermalupshift and/or starvation) whereas the UBI3 promoter conferred constitutive invertase production in growing yeast cells…

Microbiology (medical)Hot TemperatureGlycoside HydrolasesSaccharomyces cerevisiaeRibosome biogenesisSaccharomyces cerevisiaeMicrobiology:CIENCIAS DE LA VIDA [UNESCO]:CIENCIAS DE LA VIDA::Microbiología [UNESCO]Gene Expression Regulation FungalCandida albicansUNESCO::CIENCIAS DE LA VIDAPromoter Regions GeneticCandida albicansUNESCO::CIENCIAS DE LA VIDA::MicrobiologíaUbiquitinsGeneRegulation of gene expressionbeta-FructofuranosidasebiologyPromoterbiology.organism_classificationMolecular biologyCell biologyInvertaseCandida albicans ; Ubiquitin genes ; Invertase ; Saccharomyces cerevisiae ; Promoter gene fusion ; Heterologous expressionInvertaseUbiquitin genesHeterologous expressionHeterologous expressionPromoter gene fusionInternational Microbiology
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Role of Solvent on Nonenzymatic Peptide Bond Formation Mechanisms and Kinetic Isotope Effects

2013

Based on the hypothesis that similar mechanisms are involved in the peptide bond formation in aqueous solution and in the ribosome, the aminolysis of esters in aqueous solution has been the subject of numerous studies as the reference reaction for the catalyzed process. The mechanisms proposed in the literature have been explored in the present paper by hybrid QM/MM molecular dynamics simulations. The free energy profiles have been computed with the QM region of the system described at semiempirical AM1 level and by DFT within the M06-2X functional. According to the results, the formation of adduct zwitterion species is a preliminary step required for all possible mechanisms. Then, from dif…

Models MolecularEster aminolysisMolecular Dynamics SimulationMethyl formateBiochemistryCatalysisMolecular dynamicschemistry.chemical_compoundColloid and Surface ChemistryAminolysisIsotopesComputational chemistryKinetic isotope effectOrganic chemistryPeptide bondConformational isomerismDensity functionalsChemistryAqueous-solutionGeneral ChemistryHydrazinolysisRibosomeTransition stateKineticsSolvation shellChorismate mutaseZwitterionSolventsTransition-state structuresPeptides
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Peptide Bond Formation Mechanism Catalyzed by Ribosome

2015

In this paper we present a study of the peptide bond formation reaction catalyzed by ribosome. Different mechanistic proposals have been explored by means of Free Energy Perturbation methods within hybrid QM/MM potentials, where the chemical system has been described by the M06-2X functional and the environment by means of the AMBER force field. According to our results, the most favorable mechanism in the ribosome would proceed through an eight-membered ring transition state, involving a proton shuttle mechanism through the hydroxyl group of the sugar and a water molecule. This transition state is similar to that described for the reaction in solution (J. Am. Chem. Soc. 2013, 135, 8708–871…

Models MolecularReaction mechanismProtein ConformationStereochemistryElectronsBiochemistryRibosomeArticleCatalysisCatalysisFree energy perturbationColloid and Surface ChemistryProtein structureComputational chemistryMoleculePeptide bondcatalysisChemistryGeneral Chemistrypeptide bond formationribosomeBiocatalysispeptidesBiocatalysisThermodynamicsPeptidesRibosomesJournal of the American Chemical Society
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The 5' Untranslated Region of the

2018

Many of the virulence traits that make Candida albicans an important human fungal pathogen are regulated on a transcriptional level. Here, we report an important regulatory contribution of translation, which is exerted by the extensive 5′ untranslated regulatory sequence (5′ UTR) of the transcript for the protein Efg1, which determines growth, metabolism, and filamentation in the fungus. The presence of the 5′ UTR is required for efficient translation of Efg1, to promote filamentation. Because transcripts for many relevant regulators contain extensive 5′ UTR sequences, it appears that the virulence of C. albicans depends on the combination of transcriptional and translational regulatory mec…

Molecular Biology and PhysiologyDNA Mutational AnalysisEFG1Hyphaehyphal morphogenesisGene Expressiontranslationposttranscriptional regulationDNA-Binding ProteinsFungal Proteinsfilamentation5′ UTRGenes ReporterPolyribosomesProtein BiosynthesisCandida albicansMorphogenesisHumans5' Untranslated RegionsTranscription FactorsResearch ArticlemSphere
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Functional variants of 5S rRNA in the ribosomes of common sea urchin Paracentrotus lividus

2012

Abstract We have previously reported a molecular and cytogenetic characterization of three different 5S rDNA clusters in the sea urchin Paracentrotus lividus ; this study, performed at DNA level only, lends itself as starting point to verify that these clusters could contain transcribed genes, then, to demonstrate the presence of heterogeneity at functional RNA level, also. In the present work we report in P. lividus ribosomes the existence of several transcribed variants of the 5S rRNA and we associate all transcribed variants to the cluster to which belong. Our finding is the first demonstration of the presence of high heterogeneity in functional 5S rRNA molecules in animal ribosomes, a f…

Molecular Sequence DataDNA RibosomalPolymerase Chain ReactionRibosomeParacentrotus lividusSea urchin Paracentrotus lividus 5S gene 5S rRNA variants Single-strand conformation polymorphism (SSCP)5S ribosomal RNAchemistry.chemical_compoundSequence Homology Nucleic Acidbiology.animalGeneticsAnimalsCloning MolecularInternal transcribed spacerSea urchinGenePolymorphism Single-Stranded ConformationalGeneticsBase SequencebiologyRNA Ribosomal 5SComputational BiologyGeneral MedicineNon-coding RNAbiology.organism_classificationSettore BIO/18 - GeneticachemistryOocytesParacentrotusRibosomesDNAGene
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Expression of HIP/PAP mRNA in Human Hepatoma Cell Lines

2002

The present study attempts to shed more light on the role of hepatocarcinoma-intestine-pancreas/pancreatic associated protein (HIP/PAP) in hepatoma cells. We initially examined, by reverse transcription-polymerase chain reaction (RT-PCR), the HIP/PAP transcripts present in human hepatoma cell lines of different origins and with different grades of differentiation and genetic profiles. We also used DNA sequencing analysis to investigate the structure of the HIP/PAP gene. Further investigation is necessary to define the role of HIP/PAP during the development of human hepatocellular carcinoma and to ascertain whether the use of different transcripts is helpful in regulating HIP/PAP expression …

Pathologymedicine.medical_specialtyCarcinoma HepatocellularSettore MED/09 - Medicina InternaPancreatitis-Associated ProteinscarcinomaGeneral Biochemistry Genetics and Molecular BiologyHistory and Philosophy of ScienceAntigenAntigens NeoplasmHIP/PAPBiomarkers TumorTumor Cells CulturedmedicineCarcinomaHumansNeoplasmLectins C-TypeRNA MessengerPancreatitis-Associated ProteinsN-Glycosyl HydrolasesGenePlant ProteinsMessenger RNAbusiness.industryGeneral NeuroscienceLiver NeoplasmsAcute-phase proteinpancreatitihepatomamedicine.diseasePancreatitisHepatocellular carcinomaRibosome Inactivating Proteins Type 1Cancer researchproteinbusinessAcute-Phase ProteinsAnnals of the New York Academy of Sciences
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