Search results for "Assay"

showing 10 items of 2241 documents

Novel σ1 antagonists designed for tumor therapy: Structure – activity relationships of aminoethyl substituted cyclohexanes

2021

Abstract Depending on the substitution pattern and stereochemistry, 1,3-dioxanes 1 with an aminoethyl moiety in 4-position represent potent σ1 receptor antagonists. In order to increase the stability, a cyclohexane ring first replaced the acetalic 1, 3-dioxane ring of 1. A large set of aminoethyl substituted cyclohexane derivatives was prepared in a six-step synthesis. All enantiomers and diastereomers were separated by chiral HPLC at the stage of the primary alcohol 7, and their absolute configuration was determined by CD spectroscopy. Neither the relative nor the absolute configuration had a large impact on the σ1 affinity. The highest σ1 affinity was found for cis-configured benzylamines…

DU145 tumor cellsCachannelPrimary alcohol01 natural sciencesAminoethylcyclohexanes; Antagonistic activity; Biotransformation; Ca; 2+; influx assay; Calculated free energy of binding; CD spectroscopy; Chiral HPLC; DU145 tumor cells; Inhibition of human prostate tumor cell growth; Lipophilicity; Molecular dynamics simulations; Molecular interactions; per-residue binding free energy; Selectivity; Stereochemistry; Structure affinity relationships; Voltage gated Ca; 2+; channel; σ receptors; σ; 1; receptor affinityInhibition of human prostate tumor cell growthStereochemistryDrug DiscoveryMoietySelectivityBiotransformationσ receptor0303 health sciencesChemistryAminoethylcyclohexanesCD spectroscopyAbsolute configurationAminoethylcyclohexaneMolecular interactionGeneral MedicineAntagonistic activityper-residue binding free energyreceptor affinityLipophilicityVoltage gated CaStereochemistry12+Calculated free energy of bindingRetinal ganglion03 medical and health sciencesσMolecular dynamics simulationChiral HPLCLipophilicityMolecular interactionsStructure affinity relationship030304 developmental biologyPharmacologyDU145 tumor cellinflux assayMolecular dynamics simulations010405 organic chemistryOrganic ChemistryDiastereomer0104 chemical sciencesChiral column chromatographyσ receptorsStructure affinity relationshipsEnantiomerEuropean Journal of Medicinal Chemistry
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Ligand-based discovery of novel trypanosomicidal drug-like compounds: In silico identification and experimental support

2010

Abstract Two-dimensional bond-based linear indices and linear discriminant analysis are used in this report to perform a quantitative structure–activity relationship study to identify new trypanosomicidal compounds. A database with 143 anti-trypanosomal and 297 compounds having other clinical uses, are utilized to develop the theoretical models. The best discriminant models computed using bond-based linear indices provides accuracies greater than 90 for both training and test sets. Our models identify as anti-trypanosomals five out of nine compounds of a set of already-synthesized substances. The in vitro anti-trypanosomal activity of this set against epimastigote forms of Trypanosoma cruzi…

Databases FactualMolecular modelCell SurvivalStereochemistryTrypanosoma cruziIn silicoNitro compoundQuantitative Structure-Activity RelationshipComputational biologyLigandsChemometricsDrug DiscoveryAnimalsHumansChagas DiseaseTrypanosoma cruziAmastigotePharmacologychemistry.chemical_classificationLife Cycle StagesbiologyOrganic ChemistryDiscriminant AnalysisBiological activityGeneral MedicineFibroblastsModels Theoreticalbiology.organism_classificationLinear discriminant analysisTrypanocidal AgentsHigh-Throughput Screening AssayschemistryAlgorithmsSoftwareEuropean Journal of Medicinal Chemistry
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An open-source computational and data resource to analyze digital maps of immunopeptidomes

2015

We present a novel mass spectrometry-based high-throughput workflow and an open-source computational and data resource to reproducibly identify and quantify HLA-associated peptides. Collectively, the resources support the generation of HLA allele-specific peptide assay libraries consisting of consensus fragment ion spectra, and the analysis of quantitative digital maps of HLA peptidomes generated from a range of biological sources by SWATH mass spectrometry (MS). This study represents the first community-based effort to develop a robust platform for the reproducible and quantitative measurement of the entire repertoire of peptides presented by HLA molecules, an essential step towards the de…

Databases FactualimmunopeptidomeQH301-705.5Systems biologyScienceImmunologyComputational biologyBiologyBioinformaticsMass spectrometryGeneral Biochemistry Genetics and Molecular BiologyMass Spectrometry03 medical and health sciencesResource (project management)Fragment (logic)HLA Antigenstargeted mass spectrometryHigh-Throughput Screening AssaysDIAhumanAntigenshuman leukocytes antigenBiology (General)030304 developmental biology0303 health sciencesAntigen PresentationGeneral Immunology and MicrobiologyDigital mappingGeneral Neuroscience030302 biochemistry & molecular biologyQRComputational BiologyGeneral Medicine3. Good healthTools and ResourcesHigh-Throughput Screening AssaysWorkflowTargeted mass spectrometrySWATH-MSMedicinePeptidesComputational and Systems BiologyeLife
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In Vitro Evaluation of the Biological Effects of ACTIVA Kids BioACTIVE Restorative, Ionolux, and Riva Light Cure on Human Dental Pulp Stem Cells

2019

This study aimed to analyze the biological effects of three new bioactive materials on cell survival, migration, morphology, and attachment in vitro. ACTIVA Kids BioACTIVE Restorative (Pulpdent, Watertown, MA, USA) (Activa), Ionolux (Voco, Cuxhaven, Germany), and Riva Light Cure UV (SDI, Bayswater, Australia) (Riva) were handled and conditioned with a serum-free culture medium. Stem cells from human dental pulp (hDPSCs) were exposed to material extracts, and metabolic activity, cell migration, and cell morphology were evaluated. Cell adhesion to the different materials was analyzed by scanning electron microscopy (SEM). The chemical composition of the materials was evaluated by energy-dispe…

Dental materialsCytotoxicityCellGlass ionomer cement02 engineering and technologyCell morphologylcsh:TechnologyOdontologiaArticleBiological properties03 medical and health sciences0302 clinical medicineDental pulp stem cellsdental pulp cellsmedicinedental materialsGeneral Materials ScienceViability assayBioactive materialslcsh:MicroscopyCell adhesionlcsh:QC120-168.85biological propertieslcsh:QH201-278.5lcsh:TChemistrybioactive materialsCell migration030206 dentistry021001 nanoscience & nanotechnologyMolecular biologyDental pulp cellsmedicine.anatomical_structurelcsh:TA1-2040cytotoxicitylcsh:Descriptive and experimental mechanicslcsh:Electrical engineering. Electronics. Nuclear engineeringStem celllcsh:Engineering (General). Civil engineering (General)0210 nano-technologylcsh:TK1-9971Materials
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Separation of deoxyribonucleases (DNases) of normal human stratum corneum and psoriatic scales by micro-disc-electrophoresis.

1975

Normal stratum corneum and psoriatic scales were homogenized and a differential centrifugation was performed. The DNase activity of the individual fractions was investigated by micro-disc-electrophoresis. At pH 5 only in the 600 × g pellet and 105.000 × g supernatant of normal keratin DNase activity could be observed. However, all psoriatic fractions showed distinct enzyme activities. At pH 7.4 little psoriatic DNase activity could only be demonstrated in the 105.000 × g supernatant. Except from the 15.000 × g pellet all fractions of normal stratum corneum displayed marked activities. In addition the 105.000 × g supernatant showed two different DNase bands.

DermatologyKeratinStratum corneummedicineHumansPsoriasisCentrifugationPolyacrylamide gel electrophoresisSkinDifferential centrifugationchemistry.chemical_classificationChromatographyDeoxyribonucleasesintegumentary systembiologyChemistryGeneral MedicineHydrogen-Ion ConcentrationEnzyme assayIsoenzymesMolecular WeightElectrophoresismedicine.anatomical_structurebiology.proteinElectrophoresis Polyacrylamide GelDeoxyribonucleasesSubcellular FractionsArchives for dermatological research = Archiv fur dermatologische Forschung
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Bioanalysis of digoxin and its metabolites using direct serum injection combined with liquid chromatography and on-line immunochemical detection.

1994

Abstract An automated dual-column liquid chromatographic assay for digoxin is described. Serum samples are directly injected onto a restricted-access solid-phase extraction support. After liquid chromatographic (LC) separation on a C18 analytical column, antigenic analytes are detected by means of post-column immunochemical detection (ICD) using fluorescein-labelled antibodies against digoxigenin. The detection limit of this assay is 160 pg/ml (preconcentration of 1.0 ml serum). With the present method digoxin and three of its cross-reactive metabolites were determined in serum taken from patients which were orally administered a 1-mg dose of digoxin. The results obtained with LC—ICD were c…

Detection limitBioanalysisAnalyteDigoxinChromatographyDigoxinmedicine.diagnostic_testMetaboliteImmunochemistryFluoroimmunoassayGeneral ChemistryCross Reactionschemistry.chemical_compoundchemistryImmunoassaymedicineDigoxigeninHumansQuantitative analysis (chemistry)DigoxigeninBiomarkersChromatography High Pressure Liquidmedicine.drugJournal of chromatography. B, Biomedical applications
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Changes in yield ofin-vivo fluorescence of chlorophyll a as a tool for selective herbicide monitoring

1993

Triazines and derivatives of phenylurea, which are often found in outdoor water samples, induce specific changes in the yield of thein-vivo chlorophyll α-fluorescence of PSII. These changes are correlated quantitatively with the concentration of the herbicides and can therefore be used to set-up a low-price monitor system. In order to detect selectively the herbicide-sensitive part of the fluorescence emission a pulse amplitude modulated fluorimeter was used. The bioassay system was optimised with respect to test organism, growing and measuring conditions. The relationship between fluorescence yield and herbicide concentrations were experimentally determined for the triazines atrazine and s…

Detection limitChromatographyFluorescence spectrometryDCMUSimazinePlant ScienceAquatic Sciencechemistry.chemical_compoundchemistryChlorophyllFluorometerEnvironmental chemistryBioassayAtrazineJournal of Applied Phycology
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Simultaneous homogeneous immunoassay of phenytoin and phenobarbital using a Nafion-loaded carbon paste electrode and two redox cationic labels

1997

Abstract The dual-analyte homogeneous immunoassay of two antiepileptic drugs was carried out simultaneously at physiological pH by square-wave voltammetry at a Nafion-loaded carbon paste electrode. Phenobarbital (PB) and phenytoin (DPH) were labeled by a cobaltocenium salt (Cc+) and a ferroceneammonium salt (N+Fc), respectively, and the corresponding standard redox potentials were −1.05 V and 0.26 V. Detection limits of 0.25 and 0.2 μM were achieved for PB-Cc+ and DPH-N+Fc (S/N = 3) after a 5-minute accumulation step, with linear responses over the 0.25–5 and 0.2–5 μM ranges, respectively. The relative standard deviation was evaluated to be ≥ 11% for 1 μM of each labeled drug. The separate,…

Detection limitReproducibilityChromatographymedicine.diagnostic_testCationic polymerizationBiochemistryRedoxAnalytical ChemistryCarbon paste electrodechemistry.chemical_compoundchemistryNafionImmunoassaymedicineEnvironmental ChemistryVoltammetrySpectroscopyAnalytica Chimica Acta
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Moiety and linker site heterologies for highly sensitive immunoanalysis of cyprodinil in fermented alcoholic drinks

2015

Cyprodinil is a new-generation anilinopyrimidine fungicide widely used in crop protection and frequently found in fruits. In this study, novel derivatives of cyprodinil with linker site heterologies were synthesized and employed in order to produce antibodies with enhanced affinity. Moreover, moiety-heterologous haptens were designed and prepared for assay sensitivity improvement. Two competitive enzyme-linked immunosorbent assays for the analysis of this active substance were developed using direct and indirect formats, achieving IC50 values around 0.15 μg/L. Analytical figures of merit and usability of the optimized assays were evaluated with wine and cider as model food processed matrice…

Detection limitWineHapten designChromatographyChemistryFood analysisFungicideWineAssay sensitivityHighly sensitiveCidersMoietyFermentationELISAHaptenLinkerFood ScienceBiotechnology
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The biological activity of bacteriophage DNA, prepared by the cationic detergent dilution technique

1975

Abstract The preparation of phage lambda DNA infecting E. coli K 12 with cationic detergent is described. This DNA infects E. coli spheroblasts with the same efficiency as DNA prepared by phenol methods.

DetergentsViral Plaque AssayBiologyVirus Replicationmedicine.disease_causeColiphagesBacteriophagechemistry.chemical_compoundEscherichia coliGeneticsmedicinePhenolEscherichia coliVirus quantificationDNA VirusesBiological activityLambda phageChromatography Ion Exchangebiology.organism_classificationMolecular biologyQuaternary Ammonium CompoundschemistryBiochemistryViral replicationDNA ViralDNANucleic Acids Research
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