Search results for "photobleaching"

showing 10 items of 59 documents

The Nonbilayer Lipid MGDG and the Major Light-Harvesting Complex (LHCII) Promote Membrane Stacking in Supported Lipid Bilayers.

2018

The thylakoid membrane of algae and land plants is characterized by its intricate architecture, comprising tightly appressed membrane stacks termed grana. The contributions of individual components to grana stack formation are not yet fully elucidated. As an in vitro model, we use supported lipid bilayers made of thylakoid lipid mixtures to study the effect of major light-harvesting complex (LHCII), different lipids, and ions on membrane stacking, seen as elevated structures forming on top of the planar membrane surface in the presence of LHCII protein. These structures were examined by confocal laser scanning microscopy, atomic force microscopy, and fluorescence recovery after photobleachi…

0106 biological sciences0301 basic medicineMicroscopy ConfocalChemistryLipid BilayersStackingLight-Harvesting Protein ComplexesPeasfood and beveragesFluorescence recovery after photobleachingMicroscopy Atomic Force01 natural sciencesBiochemistryLight-harvesting complexDiglycerides03 medical and health sciences030104 developmental biologyGlycolipidMembraneThylakoidConfocal laser scanning microscopyBiophysicslipids (amino acids peptides and proteins)Lipid bilayer010606 plant biology & botanyBiochemistry
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Double-exponential kinetics of binding and redistribution of the fluorescent dyes in cell membranes witness for the existence of lipid microdomains.

2018

Abstract New technique of detecting lateral heterogeneity of the plasma membrane of living cells by means of membrane-binding fluorescent dyes is proposed. The kinetics of dye incorporation into the membrane or its lateral diffusion inside the membrane is measured and decomposed into exponential components by means of the Maximum Entropy Method. Two distinct exponential components are obtained consistently in all cases for several fluorescent dyes, two different cell lines and in different types of experiments including spectroscopy, flow cytometry and fluorescence recovery after photobleaching. These components are attributed to the liquid-ordered and disordered phases in the plasma membra…

0301 basic medicineKineticsBiophysicsBiochemistryFlow cytometry03 medical and health sciencesJurkat Cells0302 clinical medicineMembrane MicrodomainsmedicineHumansSpectroscopyMolecular BiologyDynamic equilibriumFluorescent Dyesmedicine.diagnostic_testChemistryLipid microdomainFluorescence recovery after photobleachingCell BiologyFluorescenceLipidsKinetics030104 developmental biologyMembraneSpectrometry Fluorescence030220 oncology & carcinogenesisBiophysicsFluorescence Recovery After PhotobleachingHeLa CellsBiochemical and biophysical research communications
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Single Particle Plasmon Sensors as Label-Free Technique To Monitor MinDE Protein Wave Propagation on Membranes.

2016

We use individual gold nanorods as pointlike detectors for the intrinsic dynamics of an oscillating biological system. We chose the pattern forming MinDE protein system from Escherichia coli (E. coli), a prominent example for self-organized chemical oscillations of membrane-associated proteins that are involved in the bacterial cell division process. Similar to surface plasmon resonance (SPR), the gold nanorods report changes in their protein surface coverage without the need for fluorescence labeling, a technique we refer to as NanoSPR. Comparing the dynamics for fluorescence labeled and unlabeled proteins, we find a reduction of the oscillation period by about 20%. The absence of photoble…

0301 basic medicineLipid BilayersAnalytical chemistryBioengineeringCell Cycle Proteins02 engineering and technologyBiosensing Techniques03 medical and health sciencesMin SystemEscherichia coliGeneral Materials ScienceSurface plasmon resonancePlasmonFluorescent DyesAdenosine TriphosphatasesNanotubesOscillationChemistryMechanical EngineeringEscherichia coli ProteinsGeneral ChemistrySurface Plasmon Resonance021001 nanoscience & nanotechnologyCondensed Matter PhysicsFluorescencePhotobleaching030104 developmental biologyBiophysicsNanorodGold0210 nano-technologyBiosensorNano letters
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A FRAP-Based Method for Monitoring Molecular Transport in Ciliary Photoreceptor Cells In Vivo

2016

The outer segment of rod and cone photoreceptor cells represents a highly modified primary sensory cilium. It renews on a daily basis throughout lifetime and effective vectorial transport to the cilium is essential for the maintenance of the photoreceptor cell function. Defects in molecules of transport modules lead to severe retinal ciliopathies. We have recently established a fluorescence recovery after photobleaching (FRAP)-based method to monitor molecular trafficking in living rodent photoreceptor cells. We irreversibly bleach the fluorescence of tagged molecules (e.g. eGFP-Rhodopsin) in photoreceptor cells of native vibratome sections through the retina by high laser intensity. In the…

0301 basic medicineRetinagenetic structuresbiologyChemistryCiliumFluorescence recovery after photobleachingRetinalRod Cell Outer SegmentPhotoreceptor cellTransport protein03 medical and health scienceschemistry.chemical_compound030104 developmental biologymedicine.anatomical_structureRhodopsinmedicineBiophysicsbiology.proteinsense organs
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The Stress-Inducible Protein DRR1 Exerts Distinct Effects on Actin Dynamics.

2018

Cytoskeletal dynamics are pivotal to memory, learning, and stress physiology, and thus psychiatric diseases. Downregulated in renal cell carcinoma 1 (DRR1) protein was characterized as the link between stress, actin dynamics, neuronal function, and cognition. To elucidate the underlying molecular mechanisms, we undertook a domain analysis of DRR1 and probed the effects on actin binding, polymerization, and bundling, as well as on actin-dependent cellular processes. Methods: DRR1 domains were cloned and expressed as recombinant proteins to perform in vitro analysis of actin dynamics (binding, bundling, polymerization, and nucleation). Cellular actin-dependent processes were analyzed in trans…

0301 basic medicineTU3ADRR1macromolecular substancesCatalysisArticleInorganic Chemistrylcsh:Chemistryactin dynamics03 medical and health sciencesSerum response factorCitosqueletProteïnes citosquelètiquesFAM107AHumansGenes Tumor SuppressorPhysical and Theoretical ChemistryCytoskeletonMolecular Biologylcsh:QH301-705.5SpectroscopyActinCytoskeletonstress physiologyMicroscopy ConfocalbiologyChemistryOrganic ChemistryFluorescence recovery after photobleachingNuclear ProteinscytoskeletonGeneral Medicinestress physiology ; cytoskeleton ; actin dynamics ; DRR1 ; TU3A ; FAM107AActinsComputer Science ApplicationsCell biologyddc:Cytoskeletal proteinsActinin alpha 1030104 developmental biologyTreadmillingProfilinlcsh:Biology (General)lcsh:QD1-999biology.proteinGelsolinFluorescence Recovery After PhotobleachingHeLa CellsInternational journal of molecular sciences
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Multi-approach metabolomics analysis and artificial simplified phytocomplexes reveal cultivar-dependent synergy between polyphenols and ascorbic acid…

2017

Fruits of the sweet cherry (Prunus avium L.) accumulate a range of antioxidants that can help to prevent cardiovascular disease, inflammation and cancer. We tested the in vitro antioxidant activity of 18 sweet cherry cultivars collected from 12 farms in the protected geographical indication region of Marostica (Vicenza, Italy) during two growing seasons. Multiple targeted and untargeted metabolomics approaches (NMR, LC-MS, HPLC-DAD, HPLC-UV) as well as artificial simplified phytocomplexes representing the cultivars Sandra Tardiva, Sandra and Grace Star were then used to determine whether the total antioxidant activity reflected the additive effects of each compound or resulted from synergis…

0301 basic medicineantioxidantAntioxidantmedicine.medical_treatmentOrganic chemistrylcsh:MedicineAscorbic AcidBiochemistry01 natural sciencesAntioxidantsMass SpectrometryAnalytical ChemistryPrunusSpectrum Analysis Techniquesartificial phytocomplexMetabolitesVitamin CPrunus avium L.Cultivarlcsh:ScienceCherriesChromatography High Pressure LiquidLiquid ChromatographyMicroscopyMultidisciplinaryChromatographic TechniquesLight Microscopyfood and beveragesVitaminsPlantsPhysical sciencesChemistryHorticultureItalyMetabolomesecondaryResearch ArticlePrunus avium L. antioxidant secondary metabolism synergy artificial phytocomplexmetabolism synergyFluorescence Recovery after PhotobleachingLiquid Chromatography-Mass SpectrometryPrunus aviumBiologyResearch and Analysis MethodsFruitsChemical compounds03 medical and health sciencesMetabolomicsSpecies SpecificityOrganic compoundsBotanymedicineMetabolomicsGenetic variabilityNuclear Magnetic Resonance Biomolecular030109 nutrition & dieteticsVitamin C010401 analytical chemistrylcsh:ROrganismsBiology and Life SciencesPolyphenolsAscorbic acid0104 chemical sciencesMetabolismPolyphenolFruitMultiprotein ComplexesLinear Modelslcsh:QPLoS ONE
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Modeling of Particle Number Fluctuations in Entire Cells

2012

In a recent study we developed a method to model protein diffusion in cells [1], where special attention was given to generating from image data of the measured cell a realistic digital model cell in which protein dynamics were simulated. The method was shown to be well suited for modeling non-equilibrium situations that arise, e.g., in photobleaching experiments, and to be capable of producing more detailed information about protein motion than traditional modeling.Another experimental way to assess protein dynamics is to study fluctuations in the local protein number, as it is done, e.g., in fluorescence correlation spectroscopy (FCS), or in similar measurements that apply single-plane il…

0303 health sciencesParticle numberChemistryProtein dynamicsResolution (electron density)BiophysicsAnalytical chemistryFluorescence correlation spectroscopymacromolecular substancesPhotobleaching03 medical and health sciences0302 clinical medicineParticleDiffusion (business)SpectroscopyBiological system030217 neurology & neurosurgery030304 developmental biologyBiophysical Journal
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Photobleaching effects onin vivoskin autofluorescence lifetime

2015

The autofluorescence lifetime of healthy human skin was measured using excitation provided by a picosecond diode laser operating at a wavelength of 405 nm and with fluorescence emission collected at 475 and 560 nm. In addition, spectral and temporal responses of healthy human skin and intradermal nevus in the spectral range 460 to 610 nm were studied before and after photobleaching. A decrease in the autofluorescences lifetimes changes was observed after photobleaching of human skin. A three-exponential model was used to fit the signals, and under this model, the most significant photoinduced changes were observed for the slowest lifetime component in healthy skin at the spectral range 520 …

AdultTime FactorsMaterials scienceLightPhotochemistryBiomedical EngineeringHuman skinAbsorption (skin)LipofuscinBiomaterialsNuclear magnetic resonanceFlavinsIntradermal NevusmedicineHumansNevusskin and connective tissue diseasesPhospholipidsSkinInflammationPhotobleachingbusiness.industryEquipment DesignMiddle AgedHandmedicine.diseasePhotobleachingFluorescenceAtomic and Molecular Physics and OpticsElectronic Optical and Magnetic MaterialsAutofluorescenceSpectrometry FluorescenceOxyhemoglobinsPicosecondFlavin-Adenine DinucleotideNevus IntradermalOptoelectronicsbusinessJournal of Biomedical Optics
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Single Molecule Spectroscopy of Oriented Recombinant Trimeric Light Harvesting Complexes of Higher Plants

2002

The bleaching dynamics of reconstituted single light-harvesting chlorophyll a/b investigated. The complexes containing one histidine6 tag per monomeric subunit were immobilised predominantly in a defined orientation with their symmetry axis perpendicular to a Ni-ion-containing surface allowing for the first time the examination of single LHCIIb in an aqueous environment. Most complexes exhibit photobleaching in one step, indicating coupling between the monomeric subunits leading to an energy transfer between adjacent subunits. Differences in bleaching behaviour between these and previous observations with single LHCIIb are discussed.

Aqueous solutionProtein subunitClinical BiochemistryGeneral ChemistryPhotochemistryPhotobleachingGeneral Biochemistry Genetics and Molecular BiologySingle Molecule Spectroscopylaw.inventionLight-harvesting complexCoupling (electronics)chemistry.chemical_compoundCrystallographyMonomerchemistrylawRecombinant DNAMolecular BiologySingle Molecules
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Parallel Measurements of in-vivo Skin Autofluorescence Lifetimes and Photobleaching Rates

2015

Experimental methodology for parallel measurements of in-vivo skin autofluorescence (AF) lifetimes and photo-bleaching dynamic has been developed and tested. The AF lifetime decay distributions were periodically collected from fixed tissue area with subsequent detection of the fluorescence intensity decrease dynamic at different time shifts after the pulse excitation. Temporal distributions of skin AF lifetimes and bleaching dynamic were collected and analyzed by means of commercial time-correlated single photon counting system. Details of the equipment and data processing are described as well as some measurement results that confirm the feasibility of the proposed technology.

AutofluorescenceFluorescence intensityMaterials scienceOpticsPulse (signal processing)In vivobusiness.industrySkin autofluorescencebusinessPhotobleachingPhoton countingExcitation
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