showing 69 related works from this author
Evaluation of the effect of chance correlations on variable selection using Partial Least Squares -Discriminant Analysis
2013
Variable subset selection is often mandatory in high throughput metabolomics and proteomics. However, depending on the variable to sample ratio there is a significant susceptibility of variable selection towards chance correlations. The evaluation of the predictive capabilities of PLSDA models estimated by cross-validation after feature selection provides overly optimistic results if the selection is performed on the entire set and no external validation set is available. In this work, a simulation of the statistical null hypothesis is proposed to test whether the discrimination capability of a PLSDA model after variable selection estimated by cross-validation is statistically higher than t…
Atmospheric compensation in Fourier transform infrared (FT-IR) spectra of clinical samples.
2013
A new method is proposed for the elimination of the spectral contribution of two atmospheric gases (CO2 and H2O) in Fourier transform infrared (FT-IR) spectra of clinical samples. The algorithm is based on the measurement of reference spectra of H2O followed by an automatic calculation of the spectral contribution of the above-mentioned gases to the sample spectra. Then this contribution is compensated by spectral subtraction. Attenuated total reflectance FT-IR spectra of serum and urine samples in the presence of atmospheric gases were corrected and compared with spectra obtained with an N2 purge. Visual inspection of the spectra as well as calculated noise levels confirmed that the metho…
Metabolomics-based strategy to assess drug hepatotoxicity and uncover the mechanisms of hepatotoxicity involved
2023
AbstractToxicity studies, among them hepatotoxicity, are key throughout preclinical stages of drug development to minimise undesired toxic effects that might eventually appear in the course of the clinical use of the new drug. Understanding the mechanism of injury of hepatotoxins is essential to efficiently anticipate their potential risk of toxicity in humans. The use of in vitro models and particularly cultured hepatocytes represents an easy and robust alternative to animal drug hepatotoxicity testing for predicting human risk. Here, we envisage an innovative strategy to identify potential hepatotoxic drugs, quantify the magnitude of the alterations caused, and uncover the mechanisms of t…
Combining Pharmacokinetics and Vibrational Spectroscopy: MCR-ALS Hard-and-Soft Modelling of Drug Uptake In Vitro Using Tailored Kinetic Constraints
2022
Raman microspectroscopy is a label-free technique which is very suited for the investigation of pharmacokinetics of cellular uptake, mechanisms of interaction, and efficacies of drugs in vitro. However, the complexity of the spectra makes the identification of spectral patterns associated with the drug and subsequent cellular responses difficult. Indeed, multivariate methods that relate spectral features to the inoculation time do not normally take into account the kinetics involved, and important theoretical information which could assist in the elucidation of the relevant spectral signatures is excluded. Here, we propose the integration of kinetic equations in the modelling of drug uptake…
An Infrared Method, with Reduced Solvent Consumption, for the Determination of Chlorsulfuron in Pesticide Formulations
2003
A simple method has been developed for the determination of Chlorsulfuron in pesticide formulations by Fourier Transform Infrared (FTIR). Samples were diluted with CHCl3− , and the FTIR spectra of the samples and standards were obtained at a nominal resolution of 4 cm− 1 from 4000 to 900 cm− 1 with the accumulation of 25 scans. Chlorsulfuron determination was based on the measurement of peak area values from 1373 to 1363 cm− 1 which were corrected by use of a two points baseline defined from 1401 to 1302 cm− 1. The limit of detection achieved, which was of the order of 6 µg g− 1, was appropriate for the determination of Chlorsulfuron in commercially available formulations. FTIR results were…
Determination of PAHs in airborne particles by accelerated solvent extraction and large-volume injection-gas chromatography-mass spectrometry.
2006
Abstract A sensitive and automated method is presented for the determination of polycyclic aromatic hydrocarbons (PAHs) in airborne particulate matter. The procedure includes extraction of PM10-bound PAHs by accelerated solvent extraction (ASE) followed by gel permeation chromatography (GPC) clean-up, and large-volume programmable temperature vaporizer (PTV–LV) injection coupled to GC–MS. The limit of detection (LOD) of the whole method, based on a signal-to-noise ratio (S/N) of 3:1, ranged from 0.26 pg m−3 to 3 pg m−3 when air volumes of 760 m3 are collected. The hexane–acetone mixture (1:1, v/v) gave the best recoveries when ASE parameters were fixed at 125 °C, 1500 psi, and a total time …
Application of point-to-point matching algorithms for background correction in on-line liquid chromatography–Fourier transform infrared spectrometry …
2009
A new background correction method for the on-line coupling of gradient liquid chromatography and Fourier transform infrared spectrometry has been developed. It is based on the use of a point-to-point matching algorithm that compares the absorption spectra of the sample data set with those of a previously recorded reference data set in order to select an appropriate reference spectrum. The spectral range used for the point-to-point comparison is selected with minimal user-interaction, thus facilitating considerably the application of the whole method. The background correction method has been successfully tested on a chromatographic separation of four nitrophenols running acetonitrile (0.08…
Determination of critical eluent composition for polyethylenglycols using on-line liquid chromatography-Fourier transform infrared spectrometry.
2008
In this work, it has been extended to methanol:water mobile phases, the use of a background correction method for on-line LC-FTIR measurements named Univariate background correction based on the use of a reference spectra matrix (UBC-RSM) and absorbance ratios. It permits to overcome the problem related to spectral changes occurring during the gradient elution, which in the past limited the on-line coupling of LC and FTIR to isocratic elutions. The combined use of the aforementioned background correction technique in on-line isocratic and gradient LC-FTIR, and partial least squares (PLS) has been applied for the search of the critical conditions for polymers. Polyethylenglycol (PEG) has bee…
Chemometric extraction of analyte-specific chromatograms in on-line gradient LC-infrared spectrometry
2009
This work exploits the possibilities offered by the recently developed multivariate method named Science-Based Calibration (SBC), for the extraction of ‘analyte-specific’ chromatograms in on-line gradient reversed phase LC-infrared spectrometry (IR) in the presence of a high spectral and chromatographic overlapping between the analyte of interest, co-eluting sample matrix constituents and the mobile phase components. The SBC method uses an experimentally measured single response spectrum of the analyte of interest and representative noise to calculate an optimum regression vector (bopt(1)). Then, the bopt(1) vector is used to predict the concentration of the analyte of interest in the spect…
Integrative Metabolomic and Transcriptomic Analysis for the Study of Bladder Cancer
2019
Metabolism reprogramming is considered a hallmark of cancer. The study of bladder cancer (BC) metabolism could be the key to developing new strategies for diagnosis and therapy. This work aimed to identify tissue and urinary metabolic signatures as biomarkers of BC and get further insight into BC tumor biology through the study of gene-metabolite networks and the integration of metabolomics and transcriptomics data. BC and control tissue samples (n = 44) from the same patients were analyzed by High-Resolution Magic Angle Spinning Nuclear Magnetic Resonance and microarrays techniques. Besides, urinary profiling study (n = 35) was performed in the same patients to identify a metabolomic profi…
ATR-Spin: an open-source 3D printed device for direct cytocentrifugation onto attenuated total reflectance crystals.
2021
Infrared Spectroscopy (IR) enables the direct and rapid characterization of cells at the molecular level. Achieving a rapid and consistent cell preparation is critical for the development of Point-of-Care diagnostics for cell analysis. Here we introduce an open-source, 3D printed device for integrating the isolation, preconcentration, and measurement of attenuated total reflectance IR spectra of cells from biofluids. The tool comprises a disposable card for cytocentrifugation, equipped with magnets, which allows reproducible integration into the pathlength of the IR spectrophotometer. Preliminary results using cell media containing A459 cells indicate that this system enables a qualitative …
Metabolic adaptation and neuroprotection differ in the retina and choroid in a piglet model of acute postnatal hypoxia.
2013
Hypoxic-ischemic insults to the neonatal brain may cause neurodevelopmental disorders. Vulnerability of different areas of the neural tissue to hypoxic-ischemic stress might be explained by either heterogeneous sensitivity to oxygen or neuroprotective capability. Our understanding of regional heterogeneity is still incomplete in terms of metabolic reconfiguration and/or activation of neuroprotective mechanisms.We studied, by western blotting, reverse-transcriptase PCR, and tandem mass spectrometry, the response of retina and choroid at protein, gene, and metabolic levels during hypoxia in a piglet model of acute postnatal hypoxia.We evidenced a metabolic shift towards glycolysis in choroid …
Science based calibration for the extraction of 'analyte-specific' HPLC-DAD chromatograms in environmental analysis
2010
Multivariate science based calibration (SBC) has been applied to the resolution of overlapped peaks in liquid chromatography with diode array detection (LC-DAD). Complex river water samples spiked with 11 pharmaceutical substances resulted in poorly resolved chromatograms containing additional peaks from interfering matrix compounds and a change in the background absorbance due to the mobile phase gradient. Applying the present multivariate approach it was possible to resolve all 11 analytes from overlapping peaks, obtaining linear calibration lines (R2 > 0.96). Recovery percentages on spiked samples ranged between 74.6 and 113.5%, which are quite satisfactory taking into account the low co…
Direct determination of polymerised triacylglycerides in deep-frying vegetable oil by near infrared spectroscopy using Partial Least Squares regressi…
2012
Abstract A green method for the determination of polymerised triacylglyceride (PTG) in deep-frying vegetable oils of different botanic origin has been developed employing near infrared (NIR) spectroscopy and Partial Least Squares (PLS) regression. Four different types of oil were heated during several hours, with and without the addition of foodstuff. NIR transmission spectra were obtained directly from sample aliquots stored in glass vials, thus avoiding the consumption of solvents and minimising waste generation. Variables employed for building the PLS models were selected applying interval PLS (iPLS) as well as Uninformative Variable Elimination-PLS (UVE-PLS). A global PLS model using sp…
Comparing Targeted vs. Untargeted MS2 Data-Dependent Acquisition for Peak Annotation in LC-MS Metabolomics
2020
One of the most widely used strategies for metabolite annotation in untargeted LCMS is based on the analysis of MSn spectra acquired using data-dependent acquisition (DDA), where precursor ions are sequentially selected from MS scans based on user-selected criteria. However, the number of MSn spectra that can be acquired during a chromatogram is limited and a trade-off between analytical speed, sensitivity and coverage must be ensured. In this research, we compare four different strategies for automated MS2 DDA, which can be easily implemented in the frame of standard QA/QC workflows for untargeted LC&ndash
On-line gradient liquid chromatography–Fourier transform infrared spectrometry determination of sugars in beverages using chemometric background corr…
2008
Abstract An on-line gradient reversed phase liquid chromatography–Fourier transform infrared spectrometry (LC–FTIR) method was developed for the determination of fructose, glucose, sucrose and maltose in beverages. Improved chromatographic resolution was obtained using a linear gradient from 75 to 55% (v/v) acetonitrile in water in 15 min. Changes in the background spectra were corrected employing “univariate background correction based on the use of a reference spectra matrix” (UBC-RSM) and using the ratio of absorbance (AR) at 2256 and 2253 cm −1 for the identification of the eluent spectra within the RSM. The method provided limits of detection in the order of 0.75 mg ml −1 . The precisi…
Determination of acrylamide in foods by pressurized fluid extraction and liquid chromatography-tandem mass spectrometry used for a survey of Spanish …
2006
An automated and rapid method for the determination of acrylamide in different food products is presented. The method involves pressurized fluid extraction (PFE) of foods with acetonitrile and precipitation with Carrez reagents. The final extract is analysed by liquid chromatography coupled to electrospray ionization tandem mass spectrometry (ESI-MS-MS). The main parameters affecting the performance of ESI-MS-MS and PFE were optimized using a design of experiments approach. The limit of quantification of the method was 5 microg kg(-1), and recoveries from incurred samples ranged between 93 and 101%. The accuracy was evaluated using the reference test materials FAPAS T3002, T3005 and T3011. …
The Potential Role of Metabolomics in Drug-Induced Liver Injury (DILI) Assessment.
2022
Drug-induced liver injury (DILI) is one of the most frequent adverse clinical reactions and a relevant cause of morbidity and mortality. Hepatotoxicity is among the major reasons for drug withdrawal during post-market and late development stages, representing a major concern to the pharmaceutical industry. The current biochemical parameters for the detection of DILI are based on enzymes (alanine aminotransferase (ALT), aspartate aminotransferase (AST), gamma-glutamyl transpeptidase (GGT), alkaline phosphatase (ALP)) and bilirubin serum levels that are not specific of DILI and therefore there is an increasing interest on novel, specific, DILI biomarkers discovery. Metabolomics has emerged as…
Analysis of longitudinal metabolomic data using multivariate curve resolution-alternating least squares and pathway analysis
2023
Extraction of meaningful biological information from longitudinal metabolomic studies is a major challenge and typically involves multivariate analysis and dimensional reduction methods for data visualization such as Principal Component Analysis or Multivariate Curve Resolution-Alternating Least Squares (MCR-ALS). Besides, a variety of computational tools have been developed to identify changes in metabolic pathways including functional analysis and pathway analysis. In this work, the joint analysis of results from MCR-ALS and metabolic pathway analysis is proposed to facilitate the interpretation of dynamic changes in longitudinal metabolomic data. The strategy is based on the use of MCR-A…
Development of a simple and low cost device for vapour phase Fourier Transform Infrared spectrometry determination of ethanol in mouthwashes
2006
Abstract A new vapour phase manifold coupled with Fourier Transform Infrared (FTIR) spectroscopy was developed for ethanol determination in mouthwashes. Two microliters of samples were injected, without any previous pre-treatment into a reactor heated at 70 °C, and the vapour phase generated transported to the FTIR spectrometer using a carrier nitrogen flow of 6 ml min−1. FTIR spectra were continuously recorded, as a function of time, by accumulating two scans and employing 8 cm−1 nominal resolution. Analytical measurements for ethanol were made in the range from 1130 to 992 cm−1 with a baseline defined between 1158 and 957 cm−1. After ethanol measurement the carrier flow was increased to 3…
Towards minimization of chlorinated solvents consume in Fourier transform infrared spectroscopy determination of Propamocarb in pesticide formulation…
2008
Abstract A method has been developed for Fourier transform infrared (FTIR) spectroscopy determination of Propamocarb in emulsifiable pesticide concentrate formulations. Five microliter sample was directly injected without any pretreatment in a CHCl 3 stream at 2 mL min −1 into a closed system and the FTIR spectra of sample and standard solutions were obtained using a nominal resolution of 4 cm −1 from 4000 to 900 cm −1 spectral region and accumulating 2 scans per spectrum. Propamocarb determination was based on the measurement of flow injection analysis (FIA) recording height established from FTIR peak area measurements from 1713 to 1703 cm −1 corrected using a baseline defined at 2000 cm −…
Detection of batch effects in liquid chromatography-mass spectrometry metabolomic data using guided principal component analysis.
2014
Metabolomics based on liquid chromatography-mass spectrometry (LC-MS) is a powerful tool for studying dynamic responses of biological systems to different physiological or pathological conditions. Differences in the instrumental response within and between batches introduce unwanted and uncontrolled data variation that should be removed to extract useful information. This work exploits a recently developed method for the identification of batch effects in high throughput genomic data based on the calculation of a delta statistic through principal component analysis (PCA) and guided PCA. Its applicability to LC-MS metabolomic data was tested on two real examples. The first example involved t…
Factors that influence the quality of metabolomics data in in vitro cell toxicity studies: a systematic survey
2021
Abstract REACH (Registration, Evaluation, Authorization and Restriction of Chemicals) is a global strategy and regulation policy of the EU that aims to improve the protection of human health and the environment through the better and earlier identification of the intrinsic properties of chemical substances. It entered into force on 1st June 2007 (EC 1907/2006). REACH and EU policies plead for the use of robust high-throughput "omic" techniques for the in vitro investigation of the toxicity of chemicals that can provide an estimation of their hazards as well as information regarding the underlying mechanisms of toxicity. In agreement with the 3R’s principles, cultured cells are nowadays wide…
Analytical potential of mid-infrared detection in capillary electrophoresis and liquid chromatography: a review.
2010
Literature published in the last decade concerning the use of mid-infrared spectrometry as a detection system in separation techniques employing a liquid mobile phase is reviewed. In addition to the continued use of isocratic liquid chromatographic (LC) techniques, advances in chemometric data evaluation techniques now allow the use of gradient techniques on a routine basis, thus significantly broadening the range of possible applications of LC-IR. The general trend towards miniaturized separation systems was also followed for mid-IR detection where two key developments are of special importance. Firstly, concerning on-line detection the advent of micro-fabricated flow-cells with inner volu…
Determination of lecithin and soybean oil in dietary supplements using partial least squares-Fourier transform infrared spectroscopy.
2008
Lecithin and soybean oil in dietary supplements were determined by Fourier transform infrared spectrometry transmission measurements in dichloromethane in combination with a partial least squares (PLS) regression. Two different PLS models were developed, using 16 synthetic mixtures of analytes in dichloromethane, making measurements in the spectral range from 931.8 to 1252.3 cm(-1) for lecithin and from 911.4 to 1246.9 cm(-1) and 1695.3 to 1774.5 cm(-1) for soybean oil. Seven products from the Spanish market with lecithin concentrations between 21.1% and 99.1% and soybean oil concentrations between 0% and 37.2% were analyzed by the proposed method and the data was compared to a chromatograp…
Simultaneous determination of Folpet and Metalaxyl in pesticide formulations by flow injection Fourier transform infrared spectrometry
2003
Fourier transform infrared (FTIR) spectrometric methodology has been developed for the simultaneous determination of Folpet and Metalaxyl in pesticide formulations. The method involves the extraction of both active principles by sonication of the sample with CHCl3 and direct measurement of the absorbance using peak height values at 1798 cm −1 corrected with a baseline defined at 1810 cm −1 for Folpet, and peak area data established from 1677 to 1667 cm −1 corrected using a baseline from 1692 to 1628 cm −1 for Metalaxyl. Limits of detection (3 s) values of 17 and 16 gg −1 were found for Folpet and Metalaxyl, respectively, with results comparable with those found by liquid chromatography with…
Analysis of the Association between Fatigue and the Plasma Lipidomic Profile of Inflammatory Bowel Disease Patients
2020
Inflammatory bowel disease (IBD) is a chronic, relapsing noninfectious inflammatory condition of the intestinal tract with two main phenotypes, ulcerative colitis (UC) and Crohn's disease (CD), and globally increasing incidence and prevalence. Nearly 80% of the IBD patients with active disease and 50% of those with inactive disease suffer fatigue with significant impairment of their quality of life. Fatigue has been associated with multiple factors in IBD patients but, in most cases, no direct cause can be identified, and risk factors in clinically quiescent IBD are contradictory. Furthermore, as the assessment of fatigue is subjective, there is an unmet clinical need for fatigue biomarkers…
Background Correction and Multivariate Curve Resolution of Online Liquid Chromatography with Infrared Spectrometric Detection
2011
J.K. acknowledges the “V Segles” grant provided by the University of Valencia to carry out this study. Authors acknowledge the financial support of Ministerio de Educación y Ciencia (Projects AGL2007-64567 and CTQ2008-05719/BQU) and Conselleria d'Educació de la Generalitat Valenciana (Project PROMETEO 2010-055).
The effect of Holder pasteurization on the lipid and metabolite composition of human milk
2022
Human milk (HM) is the gold standard for newborn nutrition. When own mother's milk is not sufficiently available, pasteurized donor human milk becomes a valuable alternative. In this study we analyzed the impact of Holder pasteurization (HoP) on the metabolic and lipidomic composition of HM. Metabolomic and lipidomic profiles of twelve paired HM samples were analysed before and after HoP by liquid chromatography-mass spectrometry (MS) and gas chromatography-MS. Lipidomic analysis enabled the annotation of 786 features in HM out of which 289 were significantly altered upon pasteurization. Fatty acid analysis showed a significant decrease of 22 out of 29 detectable fatty acids. The observed c…
Modified locally weighted—Partial least squares regression improving clinical predictions from infrared spectra of human serum samples
2012
Locally weighted partial least squares regression (LW-PLSR) has been applied to the determination of four clinical parameters in human serum samples (total protein, triglyceride, glucose and urea contents) by Fourier transform infrared (FTIR) spectroscopy. Classical LW-PLSR models were constructed using different spectral regions. For the selection of parameters by LW-PLSR modeling, a multi-parametric study was carried out employing the minimum root-mean square error of cross validation (RMSCV) as objective function. In order to overcome the effect of strong matrix interferences on the predictive accuracy of LW-PLSR models, this work focuses on sample selection. Accordingly, a novel strateg…
Mid-infrared and Raman spectrometry for quality control of pesticide formulations
2005
This article deals with recent developments in the use of vibrational spectrometry for the quantitative analysis of active components in commercial pesticide formulations. We review the techniques, such as Fourier transform infrared (FTIR) and FT-Raman spectrometries, and measurement modes, such as stopped flow or flow injection. FTIR is being used increasingly in the determination of pesticides in agrochemical products because of its relatively short analysis time. However, FT-Raman spectrometry provides direct analysis of solid and aqueous samples. It is therefore clear that these techniques enable fast, non-destructive, precise and accurate measurements, so vibrational spectrometry appea…
New background correction approach based on polynomial regressions for on-line liquid chromatography-Fourier transform infrared spectrometry.
2008
Abstract In the present study a new approach for the chemometric background correction in on-line gradient LC–FTIR is introduced. For this purpose, the spectral changes of the elution mixture during gradient elution were analyzed applying 2D correlation spectroscopy. The fundamentals of the new background correction algorithm, based on polynomial fits calculated from a reference spectra matrix (Polyfit-RSM method) are explained. The Polyfit-RSM approach was applied on blank gradient runs as well as on LC–FTIR data obtained from the injection of a soft drink sample using acetonitrile:water as eluent. Results found were critically assessed and compared to those obtained by two previous backgr…
Univariate method for background correction in liquid chromatography–Fourier transform infrared spectrometry
2007
An univariate method is proposed for background correction in on-line gradient liquid chromatography-Fourier transform infrared (LC-FTIR) spectrometry using acetonitrile:water as mobile phase components. The method is based on the calculation of the ratio of absorbances (AR) at two characteristic wavenumbers for each spectrum. This parameter is subsequently used to locate the most appropriated eluent spectrum within a reference spectra matrix (RSM) to be subtracted from each spectrum included in the sample chromatogram. To correct minor changes in eluent spectra intensity during the elution of analytes, a correction factor (Kf), defined as the ratio of the absorbance of the sample and the s…
Urinary Metabolic Signatures Detect Recurrences in Non-Muscle Invasive Bladder Cancer
2019
Patients with non-muscle invasive bladder cancer (NMIBC) undergo lifelong monitoring based on repeated cystoscopy and urinary cytology due to the high recurrence rate of this tumor. Nevertheless, these techniques have some drawbacks, namely, low accuracy in detection of low-grade tumors, omission of pre-neoplastic lesions and carcinomas in situ (CIS), invasiveness, and high costs. This work aims to identify a urinary metabolomic signature of recurrence by proton Nuclear Magnetic Resonance (1H NMR) spectroscopy for the follow-up of NMIBC patients. To do this, changes in the urinary metabolome before and after transurethral resection (TUR) of tumors are analyzed and a Partial Least Square Dis…
Towards a Rapid Screening of Liver Grafts at the Operating Room Using Mid-Infrared Spectroscopy
2020
The estimation of steatosis in a liver graft is mandatory prior to liver transplantation, as the risk of graft failure increases with the level of infiltrated fat. However, the assessment of liver steatosis before transplantation is typically based on a qualitative or semiquantitative characterization by visual inspection and palpation and histological analysis. Thus, there is an unmet need for transplantation surgeons to have access to a diagnostic tool enabling an in situ fast classification of grafts prior to extraction. In this study, we have assessed an attenuated total reflection-Fourier transform infrared (ATR-FTIR) spectroscopic method compatible with the requirements of an operatio…
Cubic smoothing splines background correction in on-line liquid chromatography–Fourier transform infrared spectrometry
2010
A background correction method for the on-line coupling of gradient liquid chromatography and Fourier transform infrared spectrometry (LC-FTIR) is proposed. The developed approach applies univariate background correction to each variable (i.e. each wave number) individually. Spectra measured in the region before and after each peak cluster are used as knots to model the variation of the eluent absorption intensity with time using cubic smoothing splines (CSS) functions. The new approach has been successfully tested on simulated as well as on real data sets obtained from injections of standard mixtures of polyethylene glycols with four different molecular weights in methanol:water, 2-propano…
Fourier transform infrared spectrometric determination of Malathion in pesticide formulations
2004
Abstract An environmentally friendly methodology has been developed for quality control analysis of emulsifiable concentrate pesticide formulations containing Malathion as active ingredient, using flow injection analysis (FIA)–Fourier transform infrared (FTIR) spectrometry. Five microlitres samples were directly injected into a 3 ml closed FIA manifold, in which 2 ml of CHCl 3 was re-circulated at 1.96 ml min −1 . After homogenisation and sample measurement, 2 μl volumes of a Malathion standard were injected, taking absorbance measurements after each injection. Peak height of the chemigrams, established from peak area values between 1027 and 1017 cm −1 , corrected with a baseline fixed from…
Fourier transform infrared determination of Fluometuron in pesticide formulations
2003
Abstract A single method has been developed for Fourier transform infrared (FTIR) determination of Fluometuron in pesticide formulations. Samples were ultrasonically shaken with CHCl3 for 5 min and the FTIR spectra of sample extracts and standards were obtained at a nominal resolution of 4 cm−1 from 4000 to 900 cm−1 accumulating 25 scans. Fluometuron determination is based on the measure of peak area from 1342 to 1321 cm−1 corrected using a baseline defined from 1352 to 1294 cm−1. This procedure provided a limit of detection of 6.5 μg g−1, a sensitivity of 0.852 a.u. g mg−1 for a pathlength of 0.11 mm, a relative standard deviation of 1.6% for three analysis of a sample containing 50.4% (w/…
Metabolomic Diversity of Human Milk Cells over the Course of Lactation—A Preliminary Study
2023
Human milk (HM) is a complex biofluid containing a wide cell variety including epithelial cells and leukocytes. However, the cellular compositions and their phenotypic properties over the course of lactation are poorly understood. The aim of this preliminary study was to characterize the cellular metabolome of HM over the course of lactation. Cells were isolated via centrifugation and the cellular fraction was characterized via cytomorphology and immunocytochemical staining. Cell metabolites were extracted and analyzed using ultra-performance liquid chromatography coupled to quadrupole time-of-flight mass spectrometry (UPLC–QqTOF-MS) in the positive and negative electrospray ionization mode…
Procedure for automated background correction in flow systems with infrared spectroscopic detection and changing liquid-phase composition
2009
This paper describes a partial least squares (PLS) based automatic procedure to correct for changes in the spectral contribution of the solvent or solvent mixtures from solute spectra recorded in these solvents. The procedure was developed for successful on-line Fourier transform infrared (FT-IR) detection in gradient high-performance liquid chromatography (HPLC) separations. It requires a reference FT-IR data set containing all possible combinations of the expected variation in solvent composition. Furthermore, a spectral region ( A) in these spectra is required where the solvents show absorption but the analytes do not. This is the case for the system ACN:H2O, an often-applied solvent mi…
Non-invasive prediction of NAFLD severity: a comprehensive, independent validation of previously postulated serum microRNA biomarkers
2018
AbstractLiver biopsy is currently the only reliable method to establish nonalcoholic fatty liver disease (NAFLD) severity. However, this technique is invasive and occasionally associated with severe complications. Thus, non-invasive diagnostic markers for NAFLD are needed. Former studies have postulated 18 different serum microRNA biomarkers with altered levels in NAFLD patients. In the present study, we have re-examined the predictive value of these serum microRNAs and found that 9 of them (miR-34a, -192, -27b, -122, -22, -21, -197, -30c and -16) associated to NAFLD severity in our independent cohort. Moreover, miR-192, -27b, -22, -197 and -30c appeared specific for NAFLD, when compared wi…
New cut-off criterion for uninformative variable elimination in multivariate calibration of near-infrared spectra for the determination of heroin in …
2008
A new cut-off criterion has been proposed for the selection of uninformative variables prior to chemometric partial least squares (PLS) modelling. After variable elimination, PLS regressions were made and assessed comparing the results with those obtained by PLS models based on the full spectral range. To assess the prediction capabilities, uninformative variable elimination (UVE)-PLS and PLS were applied to diffuse reflectance near-infrared spectra of heroin samples. The application of the proposed new cut-off criterion, based on the t-Students distribution, provided similar predictive capabilities of the PLS models than those obtained using the original criteria based on quantile value. H…
A validated and fast procedure for FTIR determination of Cypermethrin and Chlorpyrifos.
2005
Abstract A FTIR methodology has been developed for the simultaneous determination of Cypermethrin and Chlorpyrifos in pesticide commercially available formulations. The method involves the extraction of both active principles with CHCl3 and direct measurement of the peak area values between 1747 and 1737 cm−1 corrected with a baseline defined at 2000 cm−1 for Cypermethrin and peak height values established at 1549 cm−1 corrected using a baseline situated at 1650 cm−1 for Chlorpyrifos. The limits of detection achieved were of the order of 0.7 and 0.4% (w/w), and the relative standard deviation 0.4 and 0.2% for Cypermethrin and Chlorpyrifos, respectively. The developed procedure provided stat…
On-Capillary Surface-Enhanced Raman Spectroscopy: Determination of Glutathione in Whole Blood Microsamples.
2018
Oxidative stress monitoring in the neonatal period supports early outcome prediction and treatment. Glutathione (GSH) is the most abundant antioxidant in most cells and tissues, including whole blood, and its usefulness as a biomarker has been known for decades. To date, the available methods for GSH determination require laborious sample processing and the use of sophisticated laboratory equipment. To the best of our knowledge, no tools suitable for point-of-care (POC) sensing have been reported. Surface-enhanced Raman spectroscopy (SERS), performed in a microvolume capillary measurement cell, is proposed in this study as a robust approach for the quantification of GSH in human whole blood…
HPLC determination of oxadiazon in commercial pesticide formulations
2008
A simple, fast and precise high performance liquid chromatographic (HPLC) procedure has been developed for the determination of oxadiazon in emulsifiable concentrated pesticide formulations. 20 µL of diluted sample in acetonitrile were injected in a Kromasil C18 (250 ×am injetados em uma coluna Kromasil C18 4.6 mm, 5 µm) column, using acetonitrile:water (80:20) as mobile phase at 1 mL min-1 flow rate and oxadiazon determined by absorbance measurement at 292 nm. A theoretical limit of detection of 0.02 µg mL-1, a limit of quantification of 0.047 µg mL-1, corresponding to a 0.02 and 0.07% m/v in the original sample, and a relative standard deviation of 0.08% for three replicate analysis of sa…
Assessment of the statistical significance of classifications in infrared spectroscopy based diagnostic models.
2014
Fourier transform infrared (IR) spectroscopy in combination with multivariate data analysis is a versatile tool that can be applied to disease diagnosis. However, a rigorous validation of the obtained models is necessary in order to obtain robust results. This work evaluates the advantages of the use of permutation testing for determining the statistical significance of the misclassification errors obtained from IR based diagnostic models through cross validation (CV). The model performance, estimated by CV, is compared to a distribution of CV-performance values obtained using randomly permuted class labels. The distribution of ‘random CV-values’ is considered as a null distribution and use…
Prolonging in utero-like oxygenation after birth diminishes oxidative stress in the lung and brain of mice pups☆
2013
Background Fetal-to-neonatal transition is associated with oxidative stress. In preterm infants, immaturity of the antioxidant system favours supplemental oxygen-derived morbidity and mortality. Objectives To assess if prolonging in utero-like oxygenation during the fetal-to-neonatal transition limits oxidative stress in the lung and brain, improving postnatal adaptation of mice pups. Material and methods Inspiratory oxygen fraction (FiO2) in pregnant mice was reduced from 21% (room air) to 14% (hypoxia) 8–12 h prior to delivery and reset to 21% 6–8 h after birth. The control group was kept at 21% during the procedure. Reduced (GSH) and oxidized (GSSG) glutathione and its precursors [γ-glut…
Determination of caffeine in tea samples by Fourier transform infrared spectrometry
2002
A sustainable and environmentally friendly procedure has been developed for the FTIR determination of caffeine in tea leaf samples. The method is based on the extraction with ammonia and CHCl3 and direct determination of caffeine on the chloroform extracts using peak height absorbance measurements at 1658.5 cm(-1) and external calibration. The method provides a sensitivity of 0.2142 absorbance units mg(-1) mL and a limit of detection of 1 mg L(-1), corresponding to 0.002% m/m caffeine in tea leaves. As compared with a reference procedure, based on UV absorbance measurement at 276 nm after low pressure column chromatography, the developed procedure reduces the consume of CHCl3 by a factor of…
Advanced Spectroscopic Detectors for Identification and Quantification
2013
The coupling of vibration spectroscopic detectors to liquid chromatography (LC) is an interesting analytical tool that allows combining high resolution from LC with molecular specific information accessible by infrared (IR) and Raman spectrometry. This chapter describes the basics of IR and Raman spectroscopy with a special emphasis on the advantages and pitfalls of these detection techniques in LC. Two fundamentally different coupling approaches, namely, off-line hyphenation involving the physical elimination of the mobile phase and on-line hyphenation through the use of flow cells, are discussed in detail, describing the most important interfaces and diverse practical applications. Strate…
First‐Derivative Fourier‐Transform Infrared Determination of Oxadiazon in Commercial Herbicide Formulations
2008
Abstract A Fourier‐transform infrared (FTIR) method has been developed for the quantification of oxadiazon in herbicide formulations. The method involves the extraction of the active ingredient by sonication of the samples with CHCl3 and direct measurement of the peak area values in first‐order derivate spectra from 1770 cm−1 to 1774 cm−1 corrected with a baseline point located at 1950 cm−1 and after a 5‐point smoothing. A limit of detection (3 s) of 0.03 mg g−1 and a typical relative standard deviation (RSD) of 1.3% were found. Results obtained were comparable with those found by liquid chromatography with UV detection. The proposed method involves a 7‐times reduction in solvent consumptio…
Infrared biospectroscopy for a fast qualitative evaluation of sample preparation in metabolomics.
2014
Liquid chromatography-mass spectrometry (LC-MS) has been increasingly used in biomedicine to study the dynamic metabolomic responses of biological systems under different physiological or pathological conditions. To obtain an integrated snapshot of the system, metabolomic methods in biomedicine typically analyze biofluids (e.g. plasma) that require clean-up before being injected into LC-MS systems. However, high resolution LC-MS is costly in terms of resources required for sample and data analysis and care must be taken to prevent chemical (e.g. ion suppression) or statistical artifacts. Because of that, the effect of sample preparation on the metabolomic profile during metabolomic method d…
Bladder cancer recurrence surveillance by urine metabolomics analysis.
2018
AbstractNon Muscle Invasive Bladder Cancer (NMIBC) is among the most frequent malignant cancers worldwide. NMIBC is treated by transurethral resection of the bladder tumor (TURBT) and intravesical therapies, and has the highest recurrence rate among solid tumors. It requires a lifelong patient monitoring based on repeated cystoscopy and urinary cytology, both having drawbacks that include lack of sensitivity and specificity, invasiveness and care costs. We conducted an investigative clinical study to examine changes in the urinary metabolome of NMBIC patients before and after TURBT, as well during the subsequent surveillance period. Adjusting by prior probability of recurrence per risk, dis…
Assessment of oxidative damage to proteins and DNA in urine of newborn infants by a validated UPLC-MS/MS approach
2014
The assessment of oxidative stress is highly relevant in clinical Perinatology as it is associated to adverse outcomes in newborn infants. This study summarizes results from the validation of an Ultra Performance Liquid Chromatography-tandem Mass Spectrometry (UPLC-MS/MS) method for the simultaneous quantification of the urinary concentrations of a set of endogenous biomarkers, capable to provide a valid snapshot of the oxidative stress status applicable in human clinical trials, especially in the field of Perinatology. The set of analytes included are phenylalanine (Phe), para-tyrosine (p-Tyr), ortho-tyrosine (o-Tyr), meta-tyrosine (m-Tyr), 3-NO2-tyrosine (3NO(2)-Tyr), 3-Cl-tyrosine (3Cl-T…
Determination of cyromazine in pesticide commercial formulations by vibrational spectrometric procedures
2004
Two vibrational spectrometry-based methodologies were developed for Cyromazine determination in solid pesticide formulations: a Fourier transform infrared (FTIR) procedure, based on the extraction of Cyromazine by CH3OH and direct determination in the extracts by peak height measurement at 1622 cm−1 corrected using a baseline defined at 1900 cm−1, and a FT-Raman determination, made directly on the powdered solid products using standard chromatographic glass vials as sample cells and measuring the Raman intensity between 633 and 623 cm−1 for a baseline established between 663 and 601 cm−1. The sensitivity obtained was 0.01631 absorbance g−1 mg for FTIR determination and 2.23 area values g−1 …
FT-Raman determination of Mepiquat chloride in agrochemical products
2004
Abstract A fast and environmentally friendly procedure has been developed for Fourier transform Raman (FT-Raman) determination of a quaternary ammonium compound, Mepiquat chloride, in pesticide emulsifiable concentrate formulations. The method is based on the measurement of peak area values between 711 and 701 cm −1 corrected using a baseline defined at 620 cm −1 and interpolated in an external calibration of Mepiquat chloride standards dissolved in water. FT-Raman spectra were collected over 1.5 min from samples confined in screw cap standard chromatographic glass vials, at a nominal resolution of 4 cm −1 accumulating 25 scans per spectra and using a laser power of 1000 mW. Five commercial…
First-order derivative resolution of overlapped PAH peaks with common mass spectra in gas chromatography–mass spectrometry
2007
Abstract First-order derivative of 15 points smoothed chromatograms of mixtures of benzo( b )fluoranthene (BbF) and benzo( k )fluoranthene (BkF) for the m / z 252 ion obtained using two microscans has been proposed as a simple alternative to the resolution of overlapped chromatographic peaks of these two compounds which have identical mass spectra. The procedure provides limits of detection of 12 and 29 ng g −1 for BbF and BkF, respectively and offers the possibility to use the 250 and 248 ions to confirm the identity of these analytes.
On-line gel permeation chromatography–attenuated total reflectance–Fourier transform infrared determination of lecithin and soybean oil in dietary su…
2007
Gel permeation chromatography (GPC) with attenuated total reflectance-Fourier transform infrared (ATR-FTIR) spectrometry detection has been proposed for the simultaneous determination of lecithin and soybean oil in dietary supplements. The method involves the extraction of analytes with dichloromethane in an ultrasound water bath and the injection of 2 ml of centrifuged and filtered extracts into the system integrated by two Envirogel GPC columns (19 mm x150 mm, 19 mm x 300 mm) coupled on-line. Dichloromethane was used as mobile phase. A method has been developed to select the most appropriated wavenumber to be used for the determination of each considered compound from the calculation of a…
Fourier transform infrared spectrometric strategies for the determination of Buprofezin in pesticide formulations
2002
Abstract Two different strategies for Buprofezin determination, an off-line extraction and stopped-flow determination and an automated procedure, based on the on-line extraction of Buprofezin samples with chloroform and flowing action analysis–fourier transform infrared (FIA–FT-IR) spectrometric measurement of the extracts, have been developed. For the treatment of the off-line extraction mode, data a three-factor partial least squares (PLSs) calibration was developed, using the region from 1465.7 to 1342.3 cm−1 with a single point baseline defined at 2051.9 cm−1 and based on the use of chloroform solutions of Buprofezin. The method provides a R.S.D. On the other hand, the recommended FIA m…
Analysis of multi-source metabolomic data using joint and individual variation explained (JIVE).
2015
Metabolic profiling is increasingly being used for understanding biological processes but there is no single analytical technique that provides a complete quantitative or qualitative profiling of the metabolome. Data fusion (i.e. joint analysis of data from multiple sources) has the potential to circumvent this issue facilitating knowledge discovery and reliable biomarker identification. Another field of application of data fusion is the simultaneous analysis of metabolomic changes through several biofluids or tissues. However, metabolomics typically deals with large datasets, with hundreds to thousands of variables and the identification of shared and individual factors or structures acros…
FTIR approaches for diuron determination in commercial pesticide formulations.
2005
Two strategies have been developed for Diuron determination by FTIR spectrometry, an off-line extraction and stopped-flow determination and a fully mechanized procedure, based on the on-line extraction of Diuron and FIA-FTIR measurement of the extracts. The aforementioned procedures have been compared with a reference chromatographic method. The off-line FTIR spectra were obtained at a nominal resolution of 4 cm(-1) from 4000 to 900 cm(-1) by accumulating 25 scans. Diuron was determined using peak height measurements at 1582 cm(-1) corrected using a baseline defined between 1562 and 1614 cm(-1). The waste generation of the off-line procedure was 3.4 mL chloroform for each sample, and the me…
Towards the potential use of (1)H NMR spectroscopy in urine samples for prostate cancer detection
2014
A simple method based in multivariate analysis of 1H NMR spectra profiles of urine samples can be used to detect patients with prostate cancer.
A rapid method for the differentiation of yeast cells grown under carbon and nitrogen-limited conditions by means of partial least squares discrimina…
2012
This paper shows the ease of application and usefulness of mid-IR measurements for the investigation of orthogonal cell states on the example of the analysis of Pichia pastoris cells. A rapid method for the discrimination of entire yeast cells grown under carbon and nitrogen-limited conditions based on the direct acquisition of mid-IR spectra and partial least squares discriminant analysis (PLS-DA) is described. The obtained PLS-DA model was extensively validated employing two different validation strategies: (i) statistical validation employing a method based on permutation testing and (ii) external validation splitting the available data into two independent sub-sets. The Variable Importa…
Metabolomic Analysis of the Effect of Postnatal Hypoxia on the Retina in a Newly Born Piglet Model
2013
The availability of reliable biomarkers of brain injury secondary to birth asphyxia could substantially improve clinical grading, therapeutic intervention strategies, and prognosis. In this study, changes in the metabolome of retinal tissue caused by profound hypoxia in an established neonatal piglet model were investigated using an ultra performance liquid chromatography - quadrupole time of flight mass spectrometry (UPLC-QTOFMS) untargeted metabolomic approach, which included Partial Least Squares - Discriminant Analysis (PLSDA) multivariate data analysis. The initial identification of a set of discriminant metabolites from UPLC-QTOFMS data was confirmed by target UPLC-MS/MS and allowed t…
Monitoring of system conditioning after blank injections in untargeted UPLC-MS metabolomic analysis
2019
AbstractUltra-performance liquid chromatography – mass spectrometry (UPLC-MS) is widely used for untargeted metabolomics in biomedical research. To optimize the quality and precision of UPLC-MS metabolomic analysis, evaluation of blank samples for the elimination of background features is required. Although blanks are usually run either at the beginning or at the end of a sequence of samples, a systematic analysis of their effect of the instrument performance has not been properly documented. Using the analysis of two common bio-fluids (plasma and urine), we describe how the injection of blank samples within a sequence of samples may affect both the chromatographic and MS detection performa…
Immunosuppressive profiles in liquid biopsy at diagnosis predict response to neoadjuvant chemotherapy in triple-negative breast cancer.
2020
Background: Triple-negative breast cancer (TNBC) is characterised by high pathological complete response to neoadjuvant chemotherapy (NAC). However, refractory and poor NAC responders still face very poor outcome, emphasising the urgent need for tools that facilitate identification of these patients, so that surgery or alternatives to NAC are considered early in the treatment protocol. Materials and methods: We combined metabolomics, exosome circulating miRNAs and flow cytometry experimental approaches in TNBC patients at diagnosis with immunohistochemistry in needle biopsy tumours to generate NAC-response predictive models. We also co-cultured and studied crosstalk between isolated patient…
ATR-FTIR spectroscopy for the routine quality control of exosome isolations
2021
Abstract Exosomes are nanosized vesicles containing specific cargos of DNA, RNA, proteins, metabolites, and intracellular and membrane lipids. Exosome isolation needs to be optimized carefully depending on the type of biofluid and tissue and the retrieved exosomes need to be characterized. The main objective of this study was to determine the feasibility of a multimodal analysis of Attenuated Total Reflectance – Fourier Transform Infrared (ATR-FTIR) spectroscopy and UPLC–QqTOF-MSMS for the development of a routine quality control tool of isolated exosomes and the rapid characterization of their lipid profiles and total protein content. Using human milk as model example, exosomes were isolat…
FT–Raman spectrometry determination of Malathion in pesticide formulations
2003
Abstract A fast and environmentally friendly method has been developed for Fourier transform–Raman (FT–Raman) spectrometry determination of Malathion in pesticide emulsifiable concentrate formulations. The method is based on the measurement of intensity peak height values at 1737 cm −1 Raman shift corrected using a baseline defined at 1900 cm −1 . Samples were diluted with CHCl 3 and the FT–Raman spectra collected in back-scattering mode over 3.3 min at a nominal resolution of 4 cm −1 accumulating 50 scans per spectra and using a laser power of 1250 mW. The developed procedure provided a limit of detection of 1.8% w/w in the original sample. Results found by FT–Raman spectrometry were stati…
Fourier transform infrared determination of imidacloprid in pesticide formulations
2004
A simple method has been developed for Fourier Transform Infrared (FTIR) determination of Imidacloprid in pesticide formulations. Samples were diluted with CHCl3 and the FTIR spectra of samples and standards were obtained at a nominal resolution of 4 cm-1 from 4000 to 900 cm-1 accumulating 25 scans. Imidacloprid determination was based on the measure of either peak area from 1577 to 1567 cm-1 or peak height at 1572 cm-1, both corrected using a horizontal baseline defined at 1900 cm-1. The limits of detection achieved, of the order of 9 µg g-1, were appropriate for the determination of Imidacloprid in commercially available formulations. FTIR results were statistically comparable to those fo…
Una història que afavoreix el retrobament amb la tasca d’editor. Ressenya del llibre "Historia de la edición en España, 1939-1975", de Jesús A. Martí…
2016
En el número 53 de la revista L'Espill trobaràs contribucions d'Achille Mbembe, Scott Sherman, Manuel Alcaraz, Josep J. Conill, Àlex Matas Pons, Marta Darocha Mora, Joaquim Espinós, Pau Guinart, Simona Škrabec, Goran Simić, Manuel Guerrero, Xavier Arenós i Josep Puigsech Farràs, així com documents de Benjamin Constant, un full de dietari de Rafa Gomar i una conversa amb Josep Ramoneda, per Faust Ripoll.